TCONS_00063957 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063957
Unique NameTCONS_00063957
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length365

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063957 ID=TCONS_00063957|Name=TCONS_00063957|organism=Clytia hemisphaerica|type=transcript|length=365bp
ACCTGATCTTCTAAATGTGACGTAATCAAAACCGAAGTCTGTTCAAATCC
AAGCAGTAACTTTTGTTCTTCGATATCACTAGCTCTTTTCTCAGTCAATT
TTTCAAGTTGTTTCCAAAGTTCTTCTAAATCATCCAATGACGCTATGGGC
GATTCTTTGTCAGTCTCTATTTCGTTTTCCAGATACAAGGCATGTTTATT
TTCCAATAGATAGTTGCGGAGTGTCTGAAGTTCTTCGTACTGGGCCAGAG
TTACAACTTTTTGAGACTTGATCAAGCACAAACCTCTTGTTGCAATCTTA
ATGTTTTTTATAGCTGACGAATCTTCCAGACTGTTCTTCGTTGTTTCCAG
CCATTCTTTCACCTT
Run BLAST on NCBI

transcript from alignment at scaffold_404:764970..765532-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063957 ID=TCONS_00063957|Name=TCONS_00063957|organism=Clytia hemisphaerica|type=transcript|length=563bp|location=Sequence derived from alignment at scaffold_404:764970..765532- (Clytia hemisphaerica)
ACCTGATCTTCTAAATGTGACGTAATCAAAACANGAAGCCAAATACCTAC
TACTGCGCATGCGTAAGAGCGTCGAGTTGCAAATCTACGATATCTGATTG
GATAATGAATAAATAATAAACGGTCAGTACAAAATGCAATCAAAGTGGAT
GTCCGAGCTGTGGCAGTTATGAAAAACAACATCCGGGCGACTATCAGTAA
AGTCTTATAAAACTGTCNCGTAATTAAAACCGAAGTCTGTTCAAATCCAA
GCAGTAACTTTTGTTCTTCGATATCACTAGCTCTTTTCTCAGTCAATTTT
TCAAGTTGTTTCCAAAGTTCTTCTAAATCATCCAATGACGCTATGGGCGA
TTCTTTGTCAGTCTCTATTTCGTTTTCCAGATACAAGGCATGTTTATTTT
CCAATAGATAGTTGCGGAGTGTCTGAAGTTCTTCGTACTGGGCCAGAGTT
ACAACTTTTTGAGACTTGATCAAGCACAAACCTCTTGTTGCAATCTTAAT
GTTTTTTATAGCTGACGAATCTTCCAGACTGTTCTTCGTTGTTTCCAGCC
ATTCTTTCACCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040082XLOC_040082Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063957-exon-scaffold_404-1575043694:765501..765532TCONS_00063957-exon-scaffold_404-1575043694:765501..765532Clytia hemisphaericaexon
TCONS_00063957-exon-scaffold_404-1575043694:764970..765302TCONS_00063957-exon-scaffold_404-1575043694:764970..765302Clytia hemisphaericaexon
TCONS_00063957-exon-scaffold_404-1510915933:765501..765532TCONS_00063957-exon-scaffold_404-1510915933:765501..765532Clytia hemisphaericaexon
TCONS_00063957-exon-scaffold_404-1510915933:764970..765302TCONS_00063957-exon-scaffold_404-1510915933:764970..765302Clytia hemisphaericaexon
TCONS_00063957-exon-scaffold_404-1491911889:765501..765532TCONS_00063957-exon-scaffold_404-1491911889:765501..765532Clytia hemisphaericaexon
TCONS_00063957-exon-scaffold_404-1491911889:764970..765302TCONS_00063957-exon-scaffold_404-1491911889:764970..765302Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_404supercontigscaffold_404:764970..765532 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.23084	0.0288837	0	0.304101	14.9885	13.2814	5.76322	4.53464	4.58133	2.02901	2.20646	3.64171	0	0	0.131664	0.449476	0.306661	0.0621078	0	0.82618	0.593398	0.551197	0.532567	0.430475	0.231186	2.92253	1.41147	3.01888	0.253272	0.673969
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063957 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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