TCONS_00063939 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063939
Unique NameTCONS_00063939
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2106

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063939 ID=TCONS_00063939|Name=TCONS_00063939|organism=Clytia hemisphaerica|type=transcript|length=2106bp
TTGGAAAAAATGTCCAGGAATAGAAATACCTCTTGTAGGCAAAAATCTAT
AGCAATTTTAATAAGacaaaaattatcttttttcagCATTAGATAATGCT
GATTGCCAATGGCATAATATACCTACAAATCAATCATGTTGGAGAATGAG
TTGAACGGCTACCAAAAGCATTTCTACAAATCGAATGGATGTAAGAAGGC
ATTGATTCAACAAATCTCCAAGGTGAAAAAAGGCTCCAAAGTGAAATGCA
GTACGGAATCACTATCTGACCCTGCAAAAGTTATTAACTTCATTAACGGT
CATCAGATTAGAGACTTGCATCGTATAGCTAAGAATAACAAAACAAGGAA
AGCTGATGATGTCAAAGCTTCCAATATTATAGTTCCATCAAATGAGAAGA
TCATGAGGAAATTGACTAAGGGAAAAGAACAGATATCATGCAAATGTCCT
AACGGGTTCAAAAGAGGTAATAAAACAGCTCAAATCAATGGAGGATGTTT
AAATCAGTCTTGCAAGAAACAAACTCATTTGTcaccaataaaaaatgaac
gCTCCAAACCAAGAGTAGAGAAGAATAATCatcgaaaaaagaacataaaT
GATCCTGAAGATGATAAGCCGAAAGAATATGTCCTTAGATCTTCTCAGCG
CCTTCAGTATATCCACAACATGAAGAAAAGGGACATTGAAATCGACAAAC
CATTAGTGGATAGGATGACAAATATGTTCAATGAACCAATAGACATTAGA
TTAGATACAAAAAAGCTGAATATTCCTGTGTTAAACAACAATCCTCAATC
TAGAGTAAATTGTGAATGGGGCGATTGTAGGCTTTCATTTATTAATGCAG
AAGACCTTACAGACCATGTTGAATCATCTCACTTGGTTAGTTGTGAGGAA
AGTGACAACTGTAGCTGCATGTGGAGAGATTGCAAGTTTTTGAATCAATC
GTGTTCTTTTAAATGGCTATCAAAGCATGTTTTACGACATTGCGATTTGA
AGCCATTTAAATGTGTTATTCTTGGTTGCGATATGACATTTAGTACACAG
AATGGACTAGCAAGACATGTCCCAACACATTTTAATGAAAGTCGCGTTAG
ACGTGCTTGTGTCTTAACACATGAAGCAGCTAGGAAGGaagaattaaata
aaactaaaaGACAATTAAGTGCAACTTTGAGTACTTGTTCAGAATCAAGT
AGTGGTACATTTTGTAGTAGTGGTAGCAGCAGTCTGGGTGAAGAGATCAT
TTTTGACAACGCCTCAATACCAAACGTATCAGTTGGCAAACATACAGATT
TTCGTGAAAATCATCATACGTTCACGACCAAGACATACAATTATGTGAAA
AAGAAGATTCAAAAATCCACCTTTGATCCCTCTACCAATTCTGGATATTT
AGATAAAGCTTTTCGTATTGACCACAAGGTGATAGGAAGGAGGTCCGGTA
GTAATGGTACAACCGAAATGTTATTGACCCCTTCACTCAATAATTTATTC
CCTCGTTCTTCATTCTGGTGTGACAGCAATGAATTTCGAAAACGTAAACA
TTCTCACGTTGAAATCCCGATGAGGGACATGCCGGTcgatatcaaaaata
aattatacGATTCCGAACATGCTTCAAGCATTCGACGTCGCAAGAAACGA
AAGTGATCCTTTTGAATTCGTGCATCTCGATTTCTCTCAATAGAACTAAA
TcacattgttttttataaacataCCCAACCTCATCCAATGGTAATGCATA
ATTAAACATCATCAATTCATCAATAGCTCCTGAAAAATATCTATTCTCAT
AATAGTGTTTTCCGATACCGGCAAAATGGCCCCAATCTTGTGACAAATAG
CCAGTACCATCTACTTCTTTCACCAGATGTCCATCTAAATATACTTGTGC
TTTATTCTCTTGGGAATCATAAGTCGCTATTAAGTGTACCCATTGTCTTG
GTTTCACTACAGCAAAAGTATCGATGTCGAATACGGTTTTCCCTAAGTGA
TCACGATGAAACCATTTAATTTGACCATTGATGACTGAGAAATCGTACTG
ATCATGCTTGTGCAACGAGCGACTTCCGATTGTGTTGAAAAGCTGGTGTC
GATccc
Run BLAST on NCBI

protein sequence of TCONS_00063939-protein

>TCONS_00063939-protein ID=TCONS_00063939-protein|Name=TCONS_00063939-protein|organism=Clytia hemisphaerica|type=polypeptide|length=506bp
MLENELNGYQKHFYKSNGCKKALIQQISKVKKGSKVKCSTESLSDPAKVI
NFINGHQIRDLHRIAKNNKTRKADDVKASNIIVPSNEKIMRKLTKGKEQI
SCKCPNGFKRGNKTAQINGGCLNQSCKKQTHLSPIKNERSKPRVEKNNHR
KKNINDPEDDKPKEYVLRSSQRLQYIHNMKKRDIEIDKPLVDRMTNMFNE
PIDIRLDTKKLNIPVLNNNPQSRVNCEWGDCRLSFINAEDLTDHVESSHL
VSCEESDNCSCMWRDCKFLNQSCSFKWLSKHVLRHCDLKPFKCVILGCDM
TFSTQNGLARHVPTHFNESRVRRACVLTHEAARKEELNKTKRQLSATLST
CSESSSGTFCSSGSSSLGEEIIFDNASIPNVSVGKHTDFRENHHTFTTKT
YNYVKKKIQKSTFDPSTNSGYLDKAFRIDHKVIGRRSGSNGTTEMLLTPS
LNNLFPRSSFWCDSNEFRKRKHSHVEIPMRDMPVDIKNKLYDSEHASSIR
RRKKRK
Run BLAST on NCBI

transcript from alignment at scaffold_404:494369..500269-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063939 ID=TCONS_00063939|Name=TCONS_00063939|organism=Clytia hemisphaerica|type=transcript|length=5901bp|location=Sequence derived from alignment at scaffold_404:494369..500269- (Clytia hemisphaerica)
TTGGAAAAAATGTCCAGGAATAGAAATACCTCTTGTAGGCAAAAATCTAT
AGCAATTTTAATAAGACAAAAATTATCTTTTTTCAGCATTAGATAATGCT
GATTGCCAATGGCATAATATACCTACAAATCAATCATGTTGGAGAATGAG
TTGAACGGCTACCAAAAGCATTTCTACAAATCGAATGGATGTAAGAAGGC
ATTGATTCAACAAATCTCCAAGGTGAAAAAAGGCTCCAAAGTGAAATGCA
GTACGGAATCACTATCTGACCCTGCAAAAGTTATTAACTTCATTAACGGT
CATCAGATTAGAGACTTGCATCGTATAGCTAAGAATAACAAAACAAGGAA
AGCTGATGATGTCAAAGCTTCCAATATTATAGTTCCATCAAATGAGAAGA
TCATGAGGAAATTGACTAAGGGAAAAGAACAGATATCATGCAAATGTCCT
AACGGGTTCAAAAGAGGTAATAAAACAGCTCAAATCAATGGAGGATGTTT
AAATCAGTCTTGCAAGAAACAAACTCATTTGTCACCAATAAAAAATGAAC
GCTCCAAACCAAGAGTAGAGAAGAATAATCATCGAAAAAAGAACATAAAT
GATCCTGAAGATGATAAGCCGAAAGAATATGTCCTTAGATCTTCTCAGCG
CCTTCAGTATATCCACAACATGAAGAAAAGGGACATTGAAATCGACAAAC
CATTAGTGGATAGGATGACAAATATGTTCAATGAACCAATAGACATTAGA
TTAGATACAAAAAAGCTGAATATTCCTGTGTTAAACAACAATCCTCAATC
TAGAGTAAATTGTGAATGGGGCGATTGTAGGCTTTCATTTATTAATGCAG
AAGACCTTACAGACCATGTTGAATCATCTCACTTGGTTAGTTGTGAGGAA
AGTGACAACTGTAGCTGCATGTGGAGAGATTGCAAGTTTTTGAATCAATC
GTGTTCTTTTAAATGGCTATCAAAGCATGTTTTACGACATTGCGATTTGA
AGCCATTTAAATGTGTTATTCTTGGTTGCGATATGACATTTAGTACACAG
AATGGACTAGCAAGACATGTCCCAACACATTTTAATGAAAGTCGCGTTAG
ACGTGCTTGTGTCTTAACACATGAAGCAGCTAGGAAGGAAGAATTAAATA
AAACTAAAAGACAATTAAGTGCAACTTTGAGTACTTGTTCAGAATCAAGT
AGTGGTACATTTTGTAGTAGTGGTAGCAGCAGTCTGGGTGAAGAGATCAT
TTTTGACAACGCCTCAATACCAAACGTATCAGTTGGCAAACATACAGATT
TTCGTGAAAGTAAGTCCGAAGCATTTCTCATAAAGATGGAATTTCGCTTT
ATTATTGTTTGTTCTCGTTTTACAAAATAAATCGCAATAGGCAATCAAAA
TAATGTCTCCTGGAACAGTGCCATCTGTTTCTTATTTAATTACTGTTTGT
TTTTTGCGATATTACTCAACTCTGCCTGAGAGATTGTTGACGTCATAAAA
TTCACTTTTTGCATATTTTCATGTTCTCAGATCATCATACGTTCACGACC
AAGACATACAATTATGTGAAAAAGAAGATTCAAAAATCCACCTTTGATCC
CTCTACCAATTCTGGATATTTAGATAAAGCTTTTCGTATTGACCACAAGG
TAAGTGTATTTAGAATATTCCTTATGAGATTTGGTAGCGTAGAGAGGTAA
TTAAAACTTTTTTGTATTGCCAGAATTAATTGTTAATTGTTACAGTTAAG
GGAGGTAAAATGTATGTGTTTTTTTTGTTCATTATGATAAGAATTAACTT
GAGAGATATTTTCGATGCTCTATTATGCTTCTAATTCTAAGTGAATACTT
TCTATGTTTTCCTGAAAAACCAGGAGATTGAAATTGTATTATTTTTGTTA
CCTTGGCTCCATTTTTTTCCTTAGGTGATAGGAAGGAGGTCCGGTAGTAA
TGGTACAACCGAAATGTTATTGACCCCTTCACTCAATAATTTGTGAGTTA
GACTTTAATGGTATTATTGCGCATATTGTTTTTGCATTCATTTCCAATGT
GTTGTTTCTTTCACACCTCTTCACTTTTCACACTGTCCATCATCACTTAA
ATGACAGTTTTCAAACAATCTATTGTTTGTAAGTCGTGAATCAGTCTTTC
ACCTTGTAACTAACTATAGGGATTTTATGTCTTCAATTGAGCTCAATTTA
TTTTTCATTAAATACCTCTGAATACCTAATACAGTTATGTTTCCAAAAAG
TATTGTAGTGGAAAGTGTAGTAATAAGTAGTTCGTTTGTCCAAATAGAAA
TTTTGACTCCCTTAGCTGGAAAGAAACGTACGAGCTTTTCTAAACCTGAA
CACCCTCTTTAACCAGTAAAATCATCTTTATTTTTAGATTCCCTCGTTCT
TCATTCTGGTGTGACAGCAATGAATTTCGAAAACGTAAACATTCTCACGT
TGAAATCCCGATGAGGGACATGCCGGTCGATATCAAAAATAAATTATACG
ATTCCGAACATGCTTCAAGCATTCGACGTCGCAAGAAACGAAAGTGATCC
TTTTGAATTCGTGCATCTCGATTTCTCTCAATAGAACTAAATGTAAGTTT
CAACTCATACATCCTTCTTATAACACCAAGTTCTATCAGATAGAGCAAGA
ATGGCGAAGTCTGGGTTCCCAGTGGTGAGAAAACATCTACTAGAGAATAG
ACTGCTTTAGAAGAAGTCAGGGAAATTCTTTCCAGGATACATTGAATTAA
GTGTTTTAGCCAAGCTTATCTGTTTTAATTGACTTTTTCTCGTCCATTTT
GTTAATGTTGGCCAGGAAAAACAGATTCAAAGTTTTTAGCTTGATTCAGG
CAAGAACTACACTTTTATTTGAGAAATGTCAAATAAAGAAAGGTCGATTT
CTTACTAAAAGCCATNTTTTATTTGAGAAATGCCAAATAAAGAAAGGTCG
ATTTCTTACTAAAAGCCTTTGGAAAGATTTTCTGTGGCACTACTGGAAAC
CCAGCCTAAAGATGCTATTGCATTTTAAAACTTAATGGTTTGTTTTGTAC
CATACTCGATTCTGTTAAATTATTTTCCTAGGTAGTGCAATTTTTCAAGC
AATTTATTTCAATTTTTCAAGCAATTTATTTCAATTTTTCAATTTCAACA
ATTCCCAATTCAATTTATCCTTAGATAGGTCTATGTTAATTTTTCTAAAG
CATTTTAAACAATGATGATAGTTTCTGTTGAATTTTTCCAATGCTTAAAT
TTAGATTTTTAACTAGATATACATTTTCACATTATTTCACTTTTTCGTAG
TGTATTAGTTAGCTATGTGATGGGTTTAGGTTAGATTTTAAGCATTTTTA
GAATGGTCCTTGATCTAGCCGGGTTATCTGGTTTAAGATGTTTTTTAGTA
AATAGTAATTTTCTTTTGAACATTCATTTTCGGTCTTCCCAAGGCCTATA
TTAGAATTACTCAAAAGATGATTTAACTTGAAACATCATTGGATTGATCA
AATAAAGTTGGGTGTTTTTGGAGGGATTTAGGTCTTTTTTTCACTTTATC
ATTCGTCTTGACAACCTATAGAATTGTTTTTGTACCACTTATTTCTTTCT
TATTTTTGCTGTTATATCTTCTTCTAGAATACTTTAATTATATTACTGTC
CCTTCGCCAGGCCTTCAGTGGTTTGTGTTTTTTCTCAATTATTTTTACAG
TATTTTAGATAGTTCAAAATTTTAGTCAATTGTTATGACTTATGATTTGT
GCATTCAAGAATTCAGTTTTTGAATTTAGTATTGTTTCAGTACTTAGATA
GGCATATTGAAATCAATGCAACATTAGCACCATTCTTTTTTTATTGTACT
TGAGAGCTATCGTAACCATTTTAGACGATGTTCGTAATAATTCTTTAATA
GCATTAAAGTGAATGCGCACGTATATTTTTGTTGATTTAAAGTACTGTTT
AAGAACTTAGAGCTAAGACTTAGACAATACTGCTTCCACTAACTTCGGCA
ATTCAAGTCTACCTTAATCATAAAAACCTTGTTAGAGTTAAAAGTGAAAC
TTGTGGTGTAGAATTCCTTATGTCCTTTTGAGGGATAGTTATTGTCTATG
TCCACATTTAATGAATAATATAATATAAATTTATTGTTTCATGTACATAT
TTTTTGTATATTCGGATAATATTGATATGGTGTATAATTATTTTTTTTGG
TTGGTAAATTTAATATTTAAGTCGGTTGGTTACTCTGGTGTAGGTTTAAC
AATCTGTGATACTGAGTGTTGTTGAGTGGCACTGACCACTGACCTTTATA
AACGCTATCTTTGATATGAGTTTTTAGAAAAGCGGTACCCGGAAAGAAAC
CAGTGCAGTGCTTACAACAATGGTGCTACATTAGTAGTTTTTAATGAAAA
GAGATCTAGTGCTCTCGGTGCAATTTACACCCACATTGAGAAGTGGTACC
ACTAAAAACTCCGATCAAAATGTATGGCTTGGTCGGGTTTTAAAAACTAC
CTTCAGGGATTATGAACACAATAAAGTCAGCAACGTATAAGGGTCAACTC
TCGTGTTTTTAATCGCCCCGTGACGGCCCGGGTCATTATNCATAAAGTCA
GCCACGTATAAGGGTCAACTCTTGTGTTTTTAATCGCCCCGTGACGGCCT
GGGTCATTGTGAAAACGAATCCTTAGAAATGAGTACGAGCTCGGACAAGA
CGAAAATATCTGTTTTTGTTTTCATAAATAGCACTCAAACGAGAGGAAGT
AATCTGAAACCTTTTCTCCTATTTTCTTTCTCATTTAATCCTTTAACAGG
AAATCTCACAAGTGAGCTCTTAAATAAGATGAGGAAATGTCTGAAGCCGA
TCCGCTACAAAGAAATGTCACGATTTCCTATATGATCTGCATATGCTCTA
GAAATAGAGATGCCTGGATTTTCAATAGATCTTTCCTGGTATCCTTTAGG
CCTTCTAGTAAACAGATTAACCAAACAAGAACCTTCCGACTTTTAGTTTG
ACGACGGTCCTATTTTATTGTTTGTTAGTGTTTGTTTTTTCTTTTCATAA
TGTAATTTACAAAACATTTTTTTAGCTTATTAATTGTTTATTCAAATTGT
TTGTTAGTAATATTTATTTGAACACCAAACAAATTATTCTTTGGTTTCAG
AATGTGAAAAATATTGTGAACACATTGAAATGATATTACGGCTCAATCTT
GATGAACCATCGTCACCGCCAAACTTTTCAAACATTCCTGTTTGTATATT
CTTTCGAGTCTCCATTCTCTTTTGTCATGTATGCCATAGAAGCTGATATA
GCGGTATTTCCAGAATCTCATATGCTAATTTGGTAATCACAATACGTAAA
ACTTTTAATCGGGAATATCAGTACGATTTGTCTTTTGCTCTCTTTTATTT
TATTTTCTCTTTGAAAGCTAGCTCCGTAAAACAAATGCTCCATTGAAATG
AATCTTTCGGCACTCCTCACCTGTTCACCACTTCTTTATTTTACAGCACA
TTGTTTTTTATAAACATACCCAACCTCATCCAATGGTAATGCATAATTAA
ACATCATCAATTCATCAATAGCTCCTGAAAAATATCTATTCTCATAATAG
TGTTTTCCGATACCGGCAAAATGGCCCCAATCTTGTGACAAATAGCCAGT
ACCATCTACTTCTTTCACCAGATGTCCATCTAAATATACTTGTGCTTTAT
TCTCTTGGGAATCATAAGTCGCTATTAAGTGTACCCATTGTCTTGGTTTC
ACTACAGCAAAAGTATCGATGTCGAATACGGTTTTCCCTAAGTGATCACG
ATGAAACCATTTAATTTGACCATTGATGACTGAGAAATCGTACTGATCAT
GCTTGTGCAACGAGCGACTTCCGATTGTGTTGAAAAGCTGGTGTCGATCC
C

Coding sequence (CDS) from alignment at scaffold_404:494369..500269-

>TCONS_00063939 ID=TCONS_00063939|Name=TCONS_00063939|organism=Clytia hemisphaerica|type=CDS|length=6084bp|location=Sequence derived from alignment at scaffold_404:494369..500269- (Clytia hemisphaerica)
ATTCCCTCGTTCTTCATTCTGGTGTGACAGCAATGAATTTCGAAAACGTA
AACATTCTCACGTTGAAATCCCGATGAGGGACATGCCGGTCGATATCAAA
AATAAATTATACGATTCCGAACATGCTTCAAGCATTCGACGTCGCAAGAA
ACGAAAGTGAGTGATAGGAAGGAGGTCCGGTAGTAATGGTACAACCGAAA
TGTTATTGACCCCTTCACTCAATAATTTATCATCATACGTTCACGACCAA
GACATACAATTATGTGAAAAAGAAGATTCAAAAATCCACCTTTGATCCCT
CTACCAATTCTGGATATTTAGATAAAGCTTTTCGTATTGACCACAAGATG
TTGGAGAATGAGTTGAACGGCTACCAAAAGCATTTCTACAAATCGAATGG
ATGTAAGAAGGCATTGATTCAACAAATCTCCAAGGTGAAAAAAGGCTCCA
AAGTGAAATGCAGTACGGAATCACTATCTGACCCTGCAAAAGTTATTAAC
TTCATTAACGGTCATCAGATTAGAGACTTGCATCGTATAGCTAAGAATAA
CAAAACAAGGAAAGCTGATGATGTCAAAGCTTCCAATATTATAGTTCCAT
CAAATGAGAAGATCATGAGGAAATTGACTAAGGGAAAAGAACAGATATCA
TGCAAATGTCCTAACGGGTTCAAAAGAGGTAATAAAACAGCTCAAATCAA
TGGAGGATGTTTAAATCAGTCTTGCAAGAAACAAACTCATTTGTCACCAA
TAAAAAATGAACGCTCCAAACCAAGAGTAGAGAAGAATAATCATCGAAAA
AAGAACATAAATGATCCTGAAGATGATAAGCCGAAAGAATATGTCCTTAG
ATCTTCTCAGCGCCTTCAGTATATCCACAACATGAAGAAAAGGGACATTG
AAATCGACAAACCATTAGTGGATAGGATGACAAATATGTTCAATGAACCA
ATAGACATTAGATTAGATACAAAAAAGCTGAATATTCCTGTGTTAAACAA
CAATCCTCAATCTAGAGTAAATTGTGAATGGGGCGATTGTAGGCTTTCAT
TTATTAATGCAGAAGACCTTACAGACCATGTTGAATCATCTCACTTGGTT
AGTTGTGAGGAAAGTGACAACTGTAGCTGCATGTGGAGAGATTGCAAGTT
TTTGAATCAATCGTGTTCTTTTAAATGGCTATCAAAGCATGTTTTACGAC
ATTGCGATTTGAAGCCATTTAAATGTGTTATTCTTGGTTGCGATATGACA
TTTAGTACACAGAATGGACTAGCAAGACATGTCCCAACACATTTTAATGA
AAGTCGCGTTAGACGTGCTTGTGTCTTAACACATGAAGCAGCTAGGAAGG
AAGAATTAAATAAAACTAAAAGACAATTAAGTGCAACTTTGAGTACTTGT
TCAGAATCAAGTAGTGGTACATTTTGTAGTAGTGGTAGCAGCAGTCTGGG
TGAAGAGATCATTTTTGACAACGCCTCAATACCAAACGTATCAGTTGGCA
AACATACAGATTTTCGTGAAAATTCCCTCGTTCTTCATTCTGGTGTGACA
GCAATGAATTTCGAAAACGTAAACATTCTCACGTTGAAATCCCGATGAGG
GACATGCCGGTCGATATCAAAAATAAATTATACGATTCCGAACATGCTTC
AAGCATTCGACGTCGCAAGAAACGAAAGTGAGTGATAGGAAGGAGGTCCG
GTAGTAATGGTACAACCGAAATGTTATTGACCCCTTCACTCAATAATTTA
TCATCATACGTTCACGACCAAGACATACAATTATGTGAAAAAGAAGATTC
AAAAATCCACCTTTGATCCCTCTACCAATTCTGGATATTTAGATAAAGCT
TTTCGTATTGACCACAAGATGTTGGAGAATGAGTTGAACGGCTACCAAAA
GCATTTCTACAAATCGAATGGATGTAAGAAGGCATTGATTCAACAAATCT
CCAAGGTGAAAAAAGGCTCCAAAGTGAAATGCAGTACGGAATCACTATCT
GACCCTGCAAAAGTTATTAACTTCATTAACGGTCATCAGATTAGAGACTT
GCATCGTATAGCTAAGAATAACAAAACAAGGAAAGCTGATGATGTCAAAG
CTTCCAATATTATAGTTCCATCAAATGAGAAGATCATGAGGAAATTGACT
AAGGGAAAAGAACAGATATCATGCAAATGTCCTAACGGGTTCAAAAGAGG
TAATAAAACAGCTCAAATCAATGGAGGATGTTTAAATCAGTCTTGCAAGA
AACAAACTCATTTGTCACCAATAAAAAATGAACGCTCCAAACCAAGAGTA
GAGAAGAATAATCATCGAAAAAAGAACATAAATGATCCTGAAGATGATAA
GCCGAAAGAATATGTCCTTAGATCTTCTCAGCGCCTTCAGTATATCCACA
ACATGAAGAAAAGGGACATTGAAATCGACAAACCATTAGTGGATAGGATG
ACAAATATGTTCAATGAACCAATAGACATTAGATTAGATACAAAAAAGCT
GAATATTCCTGTGTTAAACAACAATCCTCAATCTAGAGTAAATTGTGAAT
GGGGCGATTGTAGGCTTTCATTTATTAATGCAGAAGACCTTACAGACCAT
GTTGAATCATCTCACTTGGTTAGTTGTGAGGAAAGTGACAACTGTAGCTG
CATGTGGAGAGATTGCAAGTTTTTGAATCAATCGTGTTCTTTTAAATGGC
TATCAAAGCATGTTTTACGACATTGCGATTTGAAGCCATTTAAATGTGTT
ATTCTTGGTTGCGATATGACATTTAGTACACAGAATGGACTAGCAAGACA
TGTCCCAACACATTTTAATGAAAGTCGCGTTAGACGTGCTTGTGTCTTAA
CACATGAAGCAGCTAGGAAGGAAGAATTAAATAAAACTAAAAGACAATTA
AGTGCAACTTTGAGTACTTGTTCAGAATCAAGTAGTGGTACATTTTGTAG
TAGTGGTAGCAGCAGTCTGGGTGAAGAGATCATTTTTGACAACGCCTCAA
TACCAAACGTATCAGTTGGCAAACATACAGATTTTCGTGAAAATTCCCTC
GTTCTTCATTCTGGTGTGACAGCAATGAATTTCGAAAACGTAAACATTCT
CACGTTGAAATCCCGATGAGGGACATGCCGGTCGATATCAAAAATAAATT
ATACGATTCCGAACATGCTTCAAGCATTCGACGTCGCAAGAAACGAAAGT
GAGTGATAGGAAGGAGGTCCGGTAGTAATGGTACAACCGAAATGTTATTG
ACCCCTTCACTCAATAATTTATCATCATACGTTCACGACCAAGACATACA
ATTATGTGAAAAAGAAGATTCAAAAATCCACCTTTGATCCCTCTACCAAT
TCTGGATATTTAGATAAAGCTTTTCGTATTGACCACAAGATGTTGGAGAA
TGAGTTGAACGGCTACCAAAAGCATTTCTACAAATCGAATGGATGTAAGA
AGGCATTGATTCAACAAATCTCCAAGGTGAAAAAAGGCTCCAAAGTGAAA
TGCAGTACGGAATCACTATCTGACCCTGCAAAAGTTATTAACTTCATTAA
CGGTCATCAGATTAGAGACTTGCATCGTATAGCTAAGAATAACAAAACAA
GGAAAGCTGATGATGTCAAAGCTTCCAATATTATAGTTCCATCAAATGAG
AAGATCATGAGGAAATTGACTAAGGGAAAAGAACAGATATCATGCAAATG
TCCTAACGGGTTCAAAAGAGGTAATAAAACAGCTCAAATCAATGGAGGAT
GTTTAAATCAGTCTTGCAAGAAACAAACTCATTTGTCACCAATAAAAAAT
GAACGCTCCAAACCAAGAGTAGAGAAGAATAATCATCGAAAAAAGAACAT
AAATGATCCTGAAGATGATAAGCCGAAAGAATATGTCCTTAGATCTTCTC
AGCGCCTTCAGTATATCCACAACATGAAGAAAAGGGACATTGAAATCGAC
AAACCATTAGTGGATAGGATGACAAATATGTTCAATGAACCAATAGACAT
TAGATTAGATACAAAAAAGCTGAATATTCCTGTGTTAAACAACAATCCTC
AATCTAGAGTAAATTGTGAATGGGGCGATTGTAGGCTTTCATTTATTAAT
GCAGAAGACCTTACAGACCATGTTGAATCATCTCACTTGGTTAGTTGTGA
GGAAAGTGACAACTGTAGCTGCATGTGGAGAGATTGCAAGTTTTTGAATC
AATCGTGTTCTTTTAAATGGCTATCAAAGCATGTTTTACGACATTGCGAT
TTGAAGCCATTTAAATGTGTTATTCTTGGTTGCGATATGACATTTAGTAC
ACAGAATGGACTAGCAAGACATGTCCCAACACATTTTAATGAAAGTCGCG
TTAGACGTGCTTGTGTCTTAACACATGAAGCAGCTAGGAAGGAAGAATTA
AATAAAACTAAAAGACAATTAAGTGCAACTTTGAGTACTTGTTCAGAATC
AAGTAGTGGTACATTTTGTAGTAGTGGTAGCAGCAGTCTGGGTGAAGAGA
TCATTTTTGACAACGCCTCAATACCAAACGTATCAGTTGGCAAACATACA
GATTTTCGTGAAAATTCCCTCGTTCTTCATTCTGGTGTGACAGCAATGAA
TTTCGAAAACGTAAACATTCTCACGTTGAAATCCCGATGAGGGACATGCC
GGTCGATATCAAAAATAAATTATACGATTCCGAACATGCTTCAAGCATTC
GACGTCGCAAGAAACGAAAGTGAGTGATAGGAAGGAGGTCCGGTAGTAAT
GGTACAACCGAAATGTTATTGACCCCTTCACTCAATAATTTATCATCATA
CGTTCACGACCAAGACATACAATTATGTGAAAAAGAAGATTCAAAAATCC
ACCTTTGATCCCTCTACCAATTCTGGATATTTAGATAAAGCTTTTCGTAT
TGACCACAAGATGTTGGAGAATGAGTTGAACGGCTACCAAAAGCATTTCT
ACAAATCGAATGGATGTAAGAAGGCATTGATTCAACAAATCTCCAAGGTG
AAAAAAGGCTCCAAAGTGAAATGCAGTACGGAATCACTATCTGACCCTGC
AAAAGTTATTAACTTCATTAACGGTCATCAGATTAGAGACTTGCATCGTA
TAGCTAAGAATAACAAAACAAGGAAAGCTGATGATGTCAAAGCTTCCAAT
ATTATAGTTCCATCAAATGAGAAGATCATGAGGAAATTGACTAAGGGAAA
AGAACAGATATCATGCAAATGTCCTAACGGGTTCAAAAGAGGTAATAAAA
CAGCTCAAATCAATGGAGGATGTTTAAATCAGTCTTGCAAGAAACAAACT
CATTTGTCACCAATAAAAAATGAACGCTCCAAACCAAGAGTAGAGAAGAA
TAATCATCGAAAAAAGAACATAAATGATCCTGAAGATGATAAGCCGAAAG
AATATGTCCTTAGATCTTCTCAGCGCCTTCAGTATATCCACAACATGAAG
AAAAGGGACATTGAAATCGACAAACCATTAGTGGATAGGATGACAAATAT
GTTCAATGAACCAATAGACATTAGATTAGATACAAAAAAGCTGAATATTC
CTGTGTTAAACAACAATCCTCAATCTAGAGTAAATTGTGAATGGGGCGAT
TGTAGGCTTTCATTTATTAATGCAGAAGACCTTACAGACCATGTTGAATC
ATCTCACTTGGTTAGTTGTGAGGAAAGTGACAACTGTAGCTGCATGTGGA
GAGATTGCAAGTTTTTGAATCAATCGTGTTCTTTTAAATGGCTATCAAAG
CATGTTTTACGACATTGCGATTTGAAGCCATTTAAATGTGTTATTCTTGG
TTGCGATATGACATTTAGTACACAGAATGGACTAGCAAGACATGTCCCAA
CACATTTTAATGAAAGTCGCGTTAGACGTGCTTGTGTCTTAACACATGAA
GCAGCTAGGAAGGAAGAATTAAATAAAACTAAAAGACAATTAAGTGCAAC
TTTGAGTACTTGTTCAGAATCAAGTAGTGGTACATTTTGTAGTAGTGGTA
GCAGCAGTCTGGGTGAAGAGATCATTTTTGACAACGCCTCAATACCAAAC
GTATCAGTTGGCAAACATACAGATTTTCGTGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040076XLOC_040076Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063939-exon-scaffold_404-1575043694:498961..500269TCONS_00063939-exon-scaffold_404-1575043694:498961..500269Clytia hemisphaericaexon
TCONS_00063939-exon-scaffold_404-1575043694:498621..498739TCONS_00063939-exon-scaffold_404-1575043694:498621..498739Clytia hemisphaericaexon
TCONS_00063939-exon-scaffold_404-1575043694:498278..498345TCONS_00063939-exon-scaffold_404-1575043694:498278..498345Clytia hemisphaericaexon
TCONS_00063939-exon-scaffold_404-1575043694:497678..497882TCONS_00063939-exon-scaffold_404-1575043694:497678..497882Clytia hemisphaericaexon
TCONS_00063939-exon-scaffold_404-1575043694:494369..494773TCONS_00063939-exon-scaffold_404-1575043694:494369..494773Clytia hemisphaericaexon
TCONS_00063939-exon-scaffold_404-1510915933:498961..500269TCONS_00063939-exon-scaffold_404-1510915933:498961..500269Clytia hemisphaericaexon
TCONS_00063939-exon-scaffold_404-1510915933:498621..498739TCONS_00063939-exon-scaffold_404-1510915933:498621..498739Clytia hemisphaericaexon
TCONS_00063939-exon-scaffold_404-1510915933:498278..498345TCONS_00063939-exon-scaffold_404-1510915933:498278..498345Clytia hemisphaericaexon
TCONS_00063939-exon-scaffold_404-1510915933:497678..497882TCONS_00063939-exon-scaffold_404-1510915933:497678..497882Clytia hemisphaericaexon
TCONS_00063939-exon-scaffold_404-1510915933:494369..494773TCONS_00063939-exon-scaffold_404-1510915933:494369..494773Clytia hemisphaericaexon
TCONS_00063939-exon-scaffold_404-1491911889:498961..500269TCONS_00063939-exon-scaffold_404-1491911889:498961..500269Clytia hemisphaericaexon
TCONS_00063939-exon-scaffold_404-1491911889:498621..498739TCONS_00063939-exon-scaffold_404-1491911889:498621..498739Clytia hemisphaericaexon
TCONS_00063939-exon-scaffold_404-1491911889:498278..498345TCONS_00063939-exon-scaffold_404-1491911889:498278..498345Clytia hemisphaericaexon
TCONS_00063939-exon-scaffold_404-1491911889:497678..497882TCONS_00063939-exon-scaffold_404-1491911889:497678..497882Clytia hemisphaericaexon
TCONS_00063939-exon-scaffold_404-1491911889:494369..494773TCONS_00063939-exon-scaffold_404-1491911889:494369..494773Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063939-proteinTCONS_00063939-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_404supercontigscaffold_404:494369..500269 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.19928	5.60585	2.62509	1.7121	16.6447	13.2508	14.0782	15.2799	7.0047	8.99852	8.34151	6.15521	5.97767	5.09376	5.24976	5.37296	5.48922	7.10687	2.54115	3.04903	3.84347	3.74571	6.56879	7.51855	12.1196	13.3124	4.95291	4.20215	3.92469	3.73487
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
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BLAST of TCONS_00063939 vs. Swiss-Prot (Human)
Match: AEBP2 (Zinc finger protein AEBP2 OS=Homo sapiens GN=AEBP2 PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 1.904e-21
Identity = 44/95 (46.32%), Postives = 60/95 (63.16%), Query Frame = 1 
Query:  808 NCEWGDCRLSFINAEDLTDHVESSHLVSCEESDNCSCMWRDCKFLNQ-SCSFKWLSKHVLRHCDLKPFKCVILGCDMTFSTQNGLARHVPTHFNE 1089
            NC W  C+  F ++ DL DH+ S H V  +      C+W+ CK  N  S S  WL +H+L H   KPFKCV+ GC+ +F++Q GLARHVPTHF++
Sbjct:  262 NCCWDQCQACFNSSPDLADHIRSIH-VDGQRGGVFVCLWKGCKVYNTPSTSQSWLQRHMLTHSGDKPFKCVVGGCNASFASQGGLARHVPTHFSQ 355
The following BLAST results are available for this feature:
BLAST of TCONS_00063939 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AEBP21.904e-2146.32Zinc finger protein AEBP2 OS=Homo sapiens GN=AEBP2... [more]
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