|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063938 ID=TCONS_00063938|Name=TCONS_00063938|organism=Clytia hemisphaerica|type=transcript|length=1500bpRun BLAST on NCBI protein sequence of TCONS_00063938-protein >TCONS_00063938-protein ID=TCONS_00063938-protein|Name=TCONS_00063938-protein|organism=Clytia hemisphaerica|type=polypeptide|length=226bp MVLNDEDVKKQIEHMMAFIHQEAKEKAEEIEAKAEEEFNIEKARLVQQERRun BLAST on NCBI transcript from alignment at scaffold_404:474567..493868- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00063938 ID=TCONS_00063938|Name=TCONS_00063938|organism=Clytia hemisphaerica|type=transcript|length=19302bp|location=Sequence derived from alignment at scaffold_404:474567..493868- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_404:474567..493868- >TCONS_00063938 ID=TCONS_00063938|Name=TCONS_00063938|organism=Clytia hemisphaerica|type=CDS|length=6129bp|location=Sequence derived from alignment at scaffold_404:474567..493868- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00063938 vs. Swiss-Prot (Human)
Match: VATE1 (V-type proton ATPase subunit E 1 OS=Homo sapiens GN=ATP6V1E1 PE=1 SV=1) HSP 1 Score: 218.009 bits (554), Expect = 8.668e-67 Identity = 127/226 (56.19%), Postives = 170/226 (75.22%), Query Frame = 3
Query: 258 MVLNDEDVKKQIEHMMAFIHQXXXXXXXXXXXXXXXXXXXXXXRLVQQERIKVMGYYEKKEKQIDLQRKIQRSNFLNQSRLQSLKTQDDHIQKILDETRSRLGEVTKDKNQYKNILNGLLTQCLYQLLEPTAQIRCRRDDLELVKEIKDECLKNYREKTKKECDLQIDSNNYLPESCSGGLELLAKGGRIRVTNTLESRLDLMSRQMLPEIRETLFGANPVRKHFE 935
M L+D DV+KQI+HMMAFI QEA EKAEEI+AKAEEEFNIEK RLVQ +R+K+M YYEKKEKQI+ Q+KIQ SN +NQ+RL+ L+ +DD I +L+E + RL +V KD +Y+ +L+GL+ Q LYQLLEP +RCR+ D LVK + + Y+ TK + D+QID +YLPE +GG+E+ +I+V+NTLESRLDL+++QM+PE+R LFGAN RK +
Sbjct: 1 MALSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEKQIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQGLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPMYKIATKNDVDVQIDQESYLPEDIAGGVEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGALFGANANRKFLD 226 The following BLAST results are available for this feature:
BLAST of TCONS_00063938 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.