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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063900 ID=TCONS_00063900|Name=TCONS_00063900|organism=Clytia hemisphaerica|type=transcript|length=5179bpRun BLAST on NCBI protein sequence of TCONS_00063900-protein >TCONS_00063900-protein ID=TCONS_00063900-protein|Name=TCONS_00063900-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1714bp MKTALLLILAILPSLIFADYFRVCYVTNWSQYRKGIAKFVIKDHYISGLCRun BLAST on NCBI transcript from alignment at scaffold_404:715504..727218+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00063900 ID=TCONS_00063900|Name=TCONS_00063900|organism=Clytia hemisphaerica|type=transcript|length=11715bp|location=Sequence derived from alignment at scaffold_404:715504..727218+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_404:715504..727218+ >TCONS_00063900 ID=TCONS_00063900|Name=TCONS_00063900|organism=Clytia hemisphaerica|type=CDS|length=46305bp|location=Sequence derived from alignment at scaffold_404:715504..727218+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00063900 vs. Swiss-Prot (Human)
Match: CHIT1 (Chitotriosidase-1 OS=Homo sapiens GN=CHIT1 PE=1 SV=1) HSP 1 Score: 245.358 bits (625), Expect = 1.221e-69 Identity = 140/370 (37.84%), Postives = 213/370 (57.57%), Query Frame = 1
Query: 88 VCYVTNWSQYRKGIAKFVIKDHYISGLCTHLLFAFGKIVKKPNGDFELTNFDPSDFTVGYPQTQKWKDVDPNLKTMLSVGGYTFGSKIFSKMVRTEAARRSFITQSVTYLKKYGFDGLDIDWEFPAKREGSSPDDKPNLTKLCKEMKEEY-------AKHGLLVSAAVIAETHGLEKSYDVAGIFKHLDFVNLMAYDLHGPWEPTANHHTD----TNPDLPSVSQSMDNTINKYIELGAVPEKIVLGLAAYGKVFELDDECGWKMHSSLTGEYGTKGEFTGESGLFSYYEICRMKMEGRVCTKKSQAFAPYASKGTDFINYDDEESIQLKVNRLVKRKGKTHLKGIMIWALDFDDFNNV-CNTGKYPLWQ 1161
VCY TNW+QYR+G A+F+ KD S LCTHL++AF + + +L+ + +D T+ Y + K ++P LKT+L++GG+ FG++ F+ MV T R++F+ ++ +L+KY FDGLD+DWE+P +GS DK T L +++ + K LL+SAAV A ++ Y+V I ++LDFVNLMAYD HG WE H++ + S ++D + ++++ G K++LG+ YG+ F L ++ + TG GT G FT E G+ +YYE+C K G + PY + ++ +DD ES + KV+ L K+KG L G M+WALD DDF CN G+YPL Q
Sbjct: 25 VCYFTNWAQYRQGEARFLPKDLDPS-LCTHLIYAFAGMT-----NHQLSTTEWNDETL-YQEFNGLKKMNPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGS-QGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWLQKGTPASKLILGMPTYGRSFTLASSSDTRVGAPATGS-GTPGPFTKEGGMLAYYEVCSWK--GATKQRIQDQKVPYIFRDNQWVGFDDVESFKTKVSYL-KQKG---LGGAMVWALDLDDFAGFSCNQGRYPLIQ 379 HSP 2 Score: 223.016 bits (567), Expect = 4.889e-62 Identity = 128/372 (34.41%), Postives = 200/372 (53.76%), Query Frame = 1
Query: 2467 ICYFTNWAQYRSDEAKFDITKNYEAGLCTHIFYAFAKVEGKDGKYKLAPYEWNDITTEYKKVTDLTGIDHNLKILLSVGGANHKSTGFTEMAKTAASRTYFITEAWQFLTKHKFSGLDIDWEYPGRRNGNPEDKENFVKLLTQMKSTFEL-------LNLMLTVTVDGKTQEIDTSYDVAEISKTVDFINVNTYNYVSPKDNYTAHHT-------DSRGVANIVANTPSATIDAWIAKGAPADKLVLGLSGWARTQKLTGICEHKLGSKTKGVGGRAGYYTKSSGFMAYYETCRMIWESRTCTGTSSVEAPYGSTKIDFISYDDPESIALKLKEIMIKKQLRGFSFWSLDLDDFWQ-SCKTGTYPLLKAAKE 3537
+CYFTNWAQYR EA+F + K+ + LCTH+ YAFA + ++L+ EWND T Y++ L ++ LK LL++GG N + FT+M TA +R F+ A +FL K+ F GLD+DWEYPG + DKE F L+ + + F+ L+L+ V +D Y+V +I++ +DF+N+ Y++ + T H++ +S A++ + A + W+ KG PA KL+LG+ + R+ L + ++G+ G G G +TK G +AYYE C W+ T + PY ++ +DD ES K+ + +K L G W+LDLDDF SC G YPL++ ++
Sbjct: 25 VCYFTNWAQYRQGEARF-LPKDLDPSLCTHLIYAFAGMT----NHQLSTTEWND-ETLYQEFNGLKKMNPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQEESGAAASLNVD---AAVQQWLQKGTPASKLILGMPTYGRSFTLASSSDTRVGAPATG-SGTPGPFTKEGGMLAYYEVCS--WKGATKQRIQDQKVPYIFRDNQWVGFDDVESFKTKV-SYLKQKGLGGAMVWALDLDDFAGFSCNQGRYPLIQTLRQ 383 HSP 3 Score: 199.904 bits (507), Expect = 3.532e-54 Identity = 124/378 (32.80%), Postives = 204/378 (53.97%), Query Frame = 1
Query: 1297 CFITNWAQYRPGNGKFDVAKHYEHGLCSHLFYAFAKVEEKDGDFKVAPYEWNDMSYGYPQTKKLKLFDPKLKTLLSIGGSSHNVEVFVNMIKTSTNRNNLITNAAKFITSQGFDGLDFYFSWEWPNPKKGSTPDDKENFGKLIKEMKAEFS-------KVNLLLTVTVVHPEF-----YDLTELSKNVDMINIVQTFKLRQAKDDKTGHPAPM------SGSTSVLTV---VESLIKRGVDPGKLNLGIATSGQTSELSKPCEWNLGSSTNEKGGEAGQFTRGTGTLAYYEICSLNWKNHVCTKLSPVKAPYGTITATKNENFVAYEDQNSISEKIKDVVMQKNLNGVAFWSLELDDFSGTFCSKGKYPLVKSAIKTL 2367
C+ TNWAQYR G +F + K + LC+HL YAFA + + +++ EWND + Y + LK +PKLKTLL+IGG + + F +M+ T+ NR + +A +F+ FDGLD WE+P +GS DKE F L++++ F K LLL+ V + Y++ ++++N+D +N++ + + + TGH +P+ SG+ + L V V+ +++G KL LG+ T G++ L+ + +G+ G G FT+ G LAYYE+CS WK ++ K PY ++ +V ++D S K+ + QK L G W+L+LDDF+G C++G+YPL+++ + L
Sbjct: 26 CYFTNWAQYRQGEARF-LPKDLDPSLCTHLIYAFAGMT----NHQLSTTEWNDETL-YQEFNGLKKMNPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLD--LDWEYPG-SQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDFVNLM-AYDFHGSWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWLQKGTPASKLILGMPTYGRSFTLASSSDTRVGAPAT-GSGTPGPFTKEGGMLAYYEVCS--WKGATKQRIQDQKVPY----IFRDNQWVGFDDVESFKTKV-SYLKQKGLGGAMVWALDLDDFAGFSCNQGRYPLIQTLRQEL 385 HSP 4 Score: 179.874 bits (455), Expect = 2.420e-47 Identity = 114/365 (31.23%), Postives = 186/365 (50.96%), Query Frame = 1
Query: 3904 VCFFTDTARERDGIASFDILQRYESDLCTHLVYTDGQIVQLGFGNIIEFRVPGFQAILHKLKSQDRRVKMLLGVGKDKVTIDSLKVLMNKPDVRKRFIQHAAIYLREYGFDGLNILWDPPTSM--PIQLKYRFTSLCNELKSHFQSR-------QLLITASLSAQIVKIDHSYEVDKISRSLDMINIMTYDYYDNQNPFAAHHTD----ARESTSLHDHKIDNTITHLINRGAIARKLILGLSTFAKTWDLKKPERFWNLGSSVFVGGGQRGKFTDTRGMLAYYEVCRKSFKNHVCTASSEVKAPYGSDGETFIGYDDPISIKYKIDNFVLTYGMKGFMISNIDYDDFSNF-CKQGHFPLLKAAR 4956
VC+FT+ A+ R G A F + + + LCTHL+Y + + E+ + LK + ++K LL +G ++ + R+ F+ A +LR+Y FDGL++ W+ P S P K RFT+L +L + FQ +LL++A++ A +D YEVDKI+++LD +N+M YD++ + H++ ES + +D + + +G A KLILG+ T+ +++ L +G+ G G G FT GMLAYYEVC S+K + K PY ++G+DD S K K+ +++ G+ G M+ +D DDF+ F C QG +PL++ R
Sbjct: 25 VCYFTNWAQYRQGEARF-LPKDLDPSLCTHLIYAFAGMTNHQL-STTEWNDETLYQEFNGLKKMNPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWLQKGTPASKLILGMPTYGRSFTLASSSDT-RVGAPA-TGSGTPGPFTKEGGMLAYYEVC--SWKGATKQRIQDQKVPYIFRDNQWVGFDDVESFKTKV-SYLKQKGLGGAMVWALDLDDFAGFSCNQGRYPLIQTLR 382 The following BLAST results are available for this feature:
BLAST of TCONS_00063900 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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