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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063898 ID=TCONS_00063898|Name=TCONS_00063898|organism=Clytia hemisphaerica|type=transcript|length=2774bp
atGTTTATCCCAGAAATTTGTtagtttttctcttttcattttctaaCAAG
TTTAAAGACTATatgtgaaaatttaaaacatcaCATCGAGTTACTTGGCA
GCTAGGTAACAAGTGGATTGAAATAGAATGAACGTGTAGGAAGACGTTAT
ATCCATAATTAGGGTAAATGATTGATTTGACACCCTCCTCCCTAGTTAGT
TTGGTCATGGCTAAACGATAGATAGGCCACGTTAAGCTGAACTTCCTCAT
ACTAAAGTCAAACTGGAAGAAAGCATTTCCAATGATATCAATTTTCTACT
GCACATCATGATTATGTGTCGTTTAGAAAAATAATATTGCTGCAGCTGAA
TCAATTAATTGTGTAAAAATGAAAAGCAATTAAAACCGCTTATTAGCttt
gtgtttttcaaaattacaaatttaTCAATCTTGTCGGTATAGTAATGTAA
GGAGAGAAGTCTATACGATATATTGTTTTGAGTAGCTACTGAATACAGAC
ATGGGTGTTTTCAAGAAACTCTTTTCCATCTTGCTATGCATTTTCACAAT
AATTTTCACGTTCACTTGGGTCAACAATCATCTTCGAATGCCTGCAATAA
CCGTCCGAGGACGAATGATGAGATACGTGGCCATAAAGCAACACAAAAGC
TCAAATAATGATTTCAATCGATCCAAAGTGAAAGCTGTACCTGGTCCTTT
TCAGGAATCGGCCTCTCCTCCCAGAGAAAGAGACTCCATCCGATTTCACA
CTATTCCGGAGAAAGAAGTCGATTCTTTGAGGAATATCGCAGTCAAATTG
AATGACCCCGGAATCCAAAGCCCTGGTAAAGCAAAAGATTCATTTGAAGA
GCAGATGACTTGTAAACTACCAAAAATCGATCCTTTCGATAAAGAAGTTC
TCCCTTTCATAAAGCACCCACGAAAATTTGAATGTAAGAAAATTCAAGAA
GAATTCTCTTACACTGAGGGAGAACAAATCTATTTGAATAAGACTCTATT
TGAGAACTACAAGAAAAGGACAAAGCGACGCATCAAATGTTTTTGGAAAC
ACTTGTTCAAGAAAGAGGGTCACAAGAATGGCATTAAAAATACGAAACTG
GCTAAATTGACGGCAGCCGAACCGATCAAATTCCCGTCTTCTGGTATGGT
TCAGGTTGAGTGTTTTGTAGGAAAGAAAGGGAAACGTAAACACGTTTATT
TTAACGTTCATGTCCAAACGCAACCTATTAAAGAACCTTTACAAAAGCCT
ACCGAGGATGAATTGTCAGTTTACATGTTGATATTCGAAAGTATGGCCAC
AGCACGTTTTAAAAGACATATGAAATCGATCGATAAGCTTTTGAAAGAGA
gacaaactttcttttttgatggttataaTAAAGTGGCTGATAATACGTAC
GTCAATCTCGTTCCTATGTTGACTGGATTACGCTCAAATAACGGACAGCG
CGATATGAAAGATGAATTTCACCGGAAATACCGGAAAATCAACTcgtttg
atgagatagatgatTTTATATGGAAATCTTTTTCTCGGAAGAATTATACA
ACAGCTTTCTTCGAAAACGCTTTCAAACTCTCGACGTTCGGTTACGGTAA
AAAAGTTGGTTTCAAAAGCGCTAAACCGTTTGATTATTTTTACCGCCCTT
ATTTTATGCAACATAATGTGCTTTCGAAACGCAGCACTAAGTATTGTTTT
GGGAACGAGCCCTTTGTTTCAACTCAAATGAAGTTTGCTCATAACTTGTT
TGATTGGTATGGtaacaaacaaaaattatttgttgTTAACATTCTCACTG
AACCTGGTCACGGGGATGAGAATGACATCGAACGCGCGGACGATCTCATC
GCGGACTCTCTACGTAAACTCTTCTCGAAAAACTCATTCAACAGAACTCT
GATTTTCTTGATGGGTGATCACGGACCTCGTTACGGAGACGTTCGACTTA
CACGTAATGGTTATTTCGAGGAACGATTAACATTTTTATCAGTTGTGACT
CCTCCTTGGTTTCACACTAATTACCCCAATCTCACTAATAATATGAAACT
TAATCAGAAGCGACTGGCCACGCCTTTCGATGTTcatcaaactttgaaag
atattttagaGGGGAACTATCGAGGAGGTCAACTGAAATATAAAACTCAA
CGAGGAATCAGTCTTTTCGATGAAATACCGTGGAACAGAACCTGCACAAC
GGCTGGGATACCTCAGCTATACTGTCCTTGTTATAATAAACCAAAAGAAA
CAGTTATAGACACGCCACTCTCCAAGAAATTAGCTGGCATAATGGTGCAG
CATATTAATTTAATGCTTTCTAAACGAAAACTTAATGTGAAATGCGCGAC
TTTAAAGCTAGATTCGATTAGACAGGTGACTTTGATGAACGAAAATGGCG
ACGAGGTTCTCTACAAAGTTCTTATAAGGGCAACACCGGGTGGCGGGCTT
TTCGAAGGCTTGGTAACGAAAAATAAAGACAGTTTTTCCATTCCTGACGG
TGCCGTCAGTCGATTGAACCTATATGGAAGACAAGGAAAATGCATAAAGT
CaggattccaaaaatattgTTATTGCAATGAACAATAAGTTTATTGGGGA
CAAATTGTAGTTCTATTGTTTTTCGAATTGTTAAAGTAAAtatgataaaa
tgaaaatcctgGTTTAGGATAgacaaatttcttttgatagcttttcatta
aaaaaaaggtCATAAATCAACCTATCATAATTTAATAGTGGCGTGATAGC
ACAAAATCTGAATGCAAAACTTTA Run BLAST on NCBI transcript from alignment at scaffold_404:682628..685679+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063898 ID=TCONS_00063898|Name=TCONS_00063898|organism=Clytia hemisphaerica|type=transcript|length=3052bp|location=Sequence derived from alignment at scaffold_404:682628..685679+ (Clytia hemisphaerica)
atGTTTATCCCAGAAATTTGTtagtttttctcttttcattttctaaCAAG
TTTAAAGACTATatgtgaaaatttaaaacatcaCATCGAGTTACTTGGCA
GCTAGGTAACAAGTGGATTGAAATAGAATGAACGTGTAGGAAGACGTTAT
ATCCATAATTAGGGTAAATGATTGATTTGACACCCTCCTCCCTAGTTAGT
TTGGTCATGGCTAAACGATAGATAGGCCACGTTAAGCTGAACTTCCTCAT
ACTAAAGTCAAACTGGAAGAAAGCATTTCCAATGATATCAATTTTCTACT
GCACATCATGATTATGTGTCGTTTAGAAAAATAATATTGCTGCAGCTGAA
TCAATTAATTGTGTAAAAATGAAAAGCAATTAAAACCGCTTATTAGCttt
gtgtttttcaaaattacaaatttaTCAATCTTGTCGGTATAGTAATGTAA
GGAGAGAAGTCTATACGATATATTGTTTTGAGTAGCTACTGAATACAGAC
ATGGGTGTTTTCAAGAAACTCTTTTCCATCTTGCTATGCATTTTCACAAT
AATTTTCACGTTCACTTGGGTCAACAATCATCTTCGAATGCCTGGTAGGT
TacagttttagttttttttgtatCTTATTCACTGATTACCACAAAGTCGT
TCATTTCAGTGCCACTAATTATTTTTGCGGACGCTATTTAAATTTCTACA
CCAACCTTTTTTTCTTGTTAGTGACTGGTTTACTCTTATTGATATGATAA
CTGTACCGGTGAATAAACGATCGGCCCCAGAGCTTCTGATTTTGATATAC
TTCATAATCTGAAACGCCTCTAAAGTCAAGCATTGATTTAAGCAGTATTC
AATCCTACTTTTTTGTGTTTAGCAATAACCGTCCGAGGACGAATGATGAG
ATACGTGGCCATAAAGCAACACAAAAGCTCAAATAATGATTTCAATCGAT
CCAAAGTGAAAGCTGTACCTGGTCCTTTTCAGGAATCGGCCTCTCCTCCC
AGAGAAAGAGACTCCATCCGATTTCACACTATTCCGGAGAAAGAAGTCGA
TTCTTTGAGGAATATCGCAGTCAAATTGAATGACCCCGGAATCCAAAGCC
CTGGTAAAGCAAAAGATTCATTTGAAGAGCAGATGACTTGTAAACTACCA
AAAATCGATCCTTTCGATAAAGAAGTTCTCCCTTTCATAAAGCACCCACG
AAAATTTGAATGTAAGAAAATTCAAGAAGAATTCTCTTACACTGAGGGAG
AACAAATCTATTTGAATAAGACTCTATTTGAGAACTACAAGAAAAGGACA
AAGCGACGCATCAAATGTTTTTGGAAACACTTGTTCAAGAAAGAGGGTCA
CAAGAATGGCATTAAAAATACGAAACTGGCTAAATTGACGGCAGCCGAAC
CGATCAAATTCCCGTCTTCTGGTATGGTTCAGGTTGAGTGTTTTGTAGGA
AAGAAAGGGAAACGTAAACACGTTTATTTTAACGTTCATGTCCAAACGCA
ACCTATTAAAGAACCTTTACAAAAGCCTACCGAGGATGAATTGTCAGTTT
ACATGTTGATATTCGAAAGTATGGCCACAGCACGTTTTAAAAGACATATG
AAATCGATCGATAAGCTTTTGAAAGAGAgacaaactttcttttttgatgg
ttataaTAAAGTGGCTGATAATACGTACGTCAATCTCGTTCCTATGTTGA
CTGGATTACGCTCAAATAACGGACAGCGCGATATGAAAGATGAATTTCAC
CGGAAATACCGGAAAATCAACTcgtttgatgagatagatgatTTTATATG
GAAATCTTTTTCTCGGAAGAATTATACAACAGCTTTCTTCGAAAACGCTT
TCAAACTCTCGACGTTCGGTTACGGTAAAAAAGTTGGTTTCAAAAGCGCT
AAACCGTTTGATTATTTTTACCGCCCTTATTTTATGCAACATAATGTGCT
TTCGAAACGCAGCACTAAGTATTGTTTTGGGAACGAGCCCTTTGTTTCAA
CTCAAATGAAGTTTGCTCATAACTTGTTTGATTGGTATGGtaacaaacaa
aaattatttgttgTTAACATTCTCACTGAACCTGGTCACGGGGATGAGAA
TGACATCGAACGCGCGGACGATCTCATCGCGGACTCTCTACGTAAACTCT
TCTCGAAAAACTCATTCAACAGAACTCTGATTTTCTTGATGGGTGATCAC
GGACCTCGTTACGGAGACGTTCGACTTACACGTAATGGTTATTTCGAGGA
ACGATTAACATTTTTATCAGTTGTGACTCCTCCTTGGTTTCACACTAATT
ACCCCAATCTCACTAATAATATGAAACTTAATCAGAAGCGACTGGCCACG
CCTTTCGATGTTcatcaaactttgaaagatattttagaGGGGAACTATCG
AGGAGGTCAACTGAAATATAAAACTCAACGAGGAATCAGTCTTTTCGATG
AAATACCGTGGAACAGAACCTGCACAACGGCTGGGATACCTCAGCTATAC
TGTCCTTGTTATAATAAACCAAAAGAAACAGTTATAGACACGCCACTCTC
CAAGAAATTAGCTGGCATAATGGTGCAGCATATTAATTTAATGCTTTCTA
AACGAAAACTTAATGTGAAATGCGCGACTTTAAAGCTAGATTCGATTAGA
CAGGTGACTTTGATGAACGAAAATGGCGACGAGGTTCTCTACAAAGTTCT
TATAAGGGCAACACCGGGTGGCGGGCTTTTCGAAGGCTTGGTAACGAAAA
ATAAAGACAGTTTTTCCATTCCTGACGGTGCCGTCAGTCGATTGAACCTA
TATGGAAGACAAGGAAAATGCATAAAGTCaggattccaaaaatattgTTA
TTGCAATGAACAATAAGTTTATTGGGGACAAATTGTAGTTCTATTGTTTT
TCGAATTGTTAAAGTAAAtatgataaaatgaaaatcctgGTTTAGGATAg
acaaatttcttttgatagcttttcattaaaaaaaaggtCATAAATCAACC
TATCATAATTTAATAGTGGCGTGATAGCACAAAATCTGAATGCAAAACTT
TA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063898-exon-scaffold_404-1491911889:682628..683221 | TCONS_00063898-exon-scaffold_404-1491911889:682628..683221 | Clytia hemisphaerica | exon |
| TCONS_00063898-exon-scaffold_404-1510915933:682628..683221 | TCONS_00063898-exon-scaffold_404-1510915933:682628..683221 | Clytia hemisphaerica | exon |
| TCONS_00063898-exon-scaffold_404-1575043694:682628..683221 | TCONS_00063898-exon-scaffold_404-1575043694:682628..683221 | Clytia hemisphaerica | exon |
| TCONS_00063898-exon-scaffold_404-1491911889:683500..685679 | TCONS_00063898-exon-scaffold_404-1491911889:683500..685679 | Clytia hemisphaerica | exon |
| TCONS_00063898-exon-scaffold_404-1510915933:683500..685679 | TCONS_00063898-exon-scaffold_404-1510915933:683500..685679 | Clytia hemisphaerica | exon |
| TCONS_00063898-exon-scaffold_404-1575043694:683500..685679 | TCONS_00063898-exon-scaffold_404-1575043694:683500..685679 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_404 | supercontig | scaffold_404:682628..685679 + |
Blast
The following BLAST results are available for this feature:
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