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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063894 ID=TCONS_00063894|Name=TCONS_00063894|organism=Clytia hemisphaerica|type=transcript|length=1213bp
tttgttttggtCACGTGCTTTCCAcgagattttttttcgatttcaagatt
tctctttttttcccgcCGAAAAAATATTCTCTCACTTCACTTTTCTTCGA
AATGGCTTTACAGCAGCACGAGGATGACAAAATTTTGGAAGTTGAAACCG
CTTCACAGctATTCTCAAGACTCTGTGGAAAACCAGTCCTTTCTACCCTG
GAAAACAAACTTTTCAAAGAGGATTGTCATAACAAGTTAGCAGAAATATC
TGGTCCTATATCAAGTGGAAAGACAGAAATCCTTTTGCATATCATACTGA
ATACTTTGCTACCTAAAACATTCAAAGATACCAGTGTCAACGGCATAGAG
GGCAAGGTAATTTTTATTGATACATCTTATAAGTTTTCTGTTTTACGACT
TGTCACATTGTTGGAGCAACGTTTATTGAATAAACTTGATCATTCAAATG
TCGATTCACTGATTTCTGCACAGTTTGTGAAGGACTGCTTGAGCagattt
tataaaatttcttgCTCCTCAAGTAAAGAACTCTTTGTTAGTTTGCTGGC
GTTGGAACCGTTTTTACAAGCAACATCAGATGTTTACCTTTTAGTGATAG
ATGATTTATACTCCTACCATTGGATTGACAGCCTGGAAGCTGGACATAAC
AAATTCTCATCGAATTACTTAAAAAGTGTTGTAGAAATCTTGAAACAATT
TACAAGAGAATATGATATCAATGTTGTGTTTACAAGGTCAGATATTTTAC
CATCTATTGTCCTGAATAATGTGGCAATAAGCAAATACACCATTCAAATT
AaagatcaaaaacaaaacttaaatatTATTTCAAAGAAGACTGGTAATGG
ATCATCATGTTTTCATTATAAGCTTGGCTATAAAGGAACTACATTTTTAT
GAGTGTTGAAGAATCGATTGAACTTGAGTTGGATGGAAGTTTATTCTTGT
CTTTGcttgttgtttccaatatttttggtaaagGTTTGTTCTAATTcgtc
ttattttttcaaaagttattatTTTGACACTGACTTACTATTTAGCTTTG
ACCCAACCTCTAAACTAGCTGAAAATCATAGCTTTTAACACTTACaaatc
tttttaaagaattgAAACAAAGATTGTTTGCTCAATACAGGTGTAAATAA
AAAGCCATAAAATTTTTTATGGCTTTTGTaacaaatattaagaatttcat
tttttgataaaGA Run BLAST on NCBI protein sequence of TCONS_00063894-protein >TCONS_00063894-protein ID=TCONS_00063894-protein|Name=TCONS_00063894-protein|organism=Clytia hemisphaerica|type=polypeptide|length=299bp
CFGHVLSTRFFFDFKISLFFPPKKYSLTSLFFEMALQQHEDDKILEVETA
SQLFSRLCGKPVLSTLENKLFKEDCHNKLAEISGPISSGKTEILLHIILN
TLLPKTFKDTSVNGIEGKVIFIDTSYKFSVLRLVTLLEQRLLNKLDHSNV
DSLISAQFVKDCLSRFYKISCSSSKELFVSLLALEPFLQATSDVYLLVID
DLYSYHWIDSLEAGHNKFSSNYLKSVVEILKQFTREYDINVVFTRSDILP
SIVLNNVAISKYTIQIKDQKQNLNIISKKTGNGSSCFHYKLGYKGTTFL Run BLAST on NCBI transcript from alignment at scaffold_404:632296..645674+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063894 ID=TCONS_00063894|Name=TCONS_00063894|organism=Clytia hemisphaerica|type=transcript|length=13379bp|location=Sequence derived from alignment at scaffold_404:632296..645674+ (Clytia hemisphaerica)
tttgttttggtCACGTGCTTTCCAcgagattttttttcgatttcaagatt
tctctttttttcccgcCGAAAAAATATTCTCTCACTTCACTTTTCTTCGA
AATGGCTTTACAGCAGCACGAGGATGACAAAATTTTGGAAGTTGAAACCG
CTTCACAGGTACTCTTTCTTACTTTTAAACACTTTCCTTCCAATTATGTT
TTCTTCAACCGTTTCTCTTTAACGAGAACTTTTTTTCAGCTGGAGGTCGC
AAAATTTTAAAGcatcaaaagaatttggaaaaaatagcatttcCCAGGGT
CTATACAGCCTCTAACTGCCAATATTTGGAACCAAAAGCAGTTTTAGACC
TACCttgaggttctataaattaacctttgttcgtttGTCCGTCTGTTGTT
AGCTTATCTCGAGATTTCACCATTAGACCgcaatcacaaataacttgcTT
TTGCTTTGTGTTGTTtttcaggctagctctaaagctctaaaacagcatct
agtAACGCTTACAAAcaaatatgtcagatctaacaaaattgataacaaca
ctgtcatcattgacaataaaacatacgattttctgtcaagagcctgtAAA
cattccatcgaaatgatctatcacagctacGTCCACCATTTTGAGCGCTg
tccgaggattgagctgaGAACGCCCGCAAGAGTGAAAAACtctaatctgt
caatcattttctcaagcgaagggACGTgaagcaattctagctttacaatA
GTGCTGCGGATCATtggtggatagtattcaattatcattattcctttatt
ttcattcctagaacttttgcaaaaaaaggaaaaatagaaaagttgcaatt
tttactgctctattcacatactgaatttgaaagatcttctatgtggcatt
tttttgcaaactttaaaaaactgatttttgtcccgctggGACTTTAGCTT
GAGTGCTTGCGTGCAgaatagggtacaaagtccaaatatgcgtttcccgt
aatttttgtatgaagagttaagtCTATACTGTCAGAGACTTTCCAAGGTT
TAAAAAAGTGACCTTTATAGCTCACACATACCAGCTCTTTTTTTTGGACT
GATGGCATGGATTCTTAAATATTTgttagaaaaaatcttcaacgtaaaat
attcatgatgtaatttTTTTGTCTGTAAATTAAAATATGTCACACTACTA
ACCCGATCACCATTCCTCACGGACATCTCCATTCCTCACTATTCCTCTTC
TATTCCTCACCATTCCTCAGCGTTCCTCGAAcattcctcaggaatggata
tttcaaaactttgttttagcaTTCCTTATCTATTCCTCAAACGTTCCTGA
GGAATGGACATTTATGACATTATTCTTAAGcgttcctcactcgttcctcA
GGAATAGAGATATTTCAACTTCATTTCAGCATTCCTCAtctattcctcga
acgttcctcaggaatggacattTCTGACATTATTTTTAAGCTTTCCTCAC
TCGTTCCTcaaacgttcctcaggaatggagatATCTCTTCTTCACTTTAT
CGTTCCTCATCTATTCCTCAAACGTTCCTGAAGAATGGGCTTTCATGACA
TTATTTAAAATTGTTCCTCGTTTGTTCCTCAGGAAAAGACATTTTCGGAG
CTGTTAATACATTTTCATGGATAAgatattcaatatcaaaaacttttacG
TCATTTAAAATTTCAGGCTCTGCCTCCAGAGAAAGAGAGAGGGCTAGAGA
AAAACTTTTGTCCTTTAGATTTAGAACACATTAGTAACGGAAGCTAAATT
AACCCATATTCGTGCGGCCgtttgttaccaacttttctcaagattggctc
atcATTCAAAGTTTCtgattttggcacaaaggtgcatgactaacaaaccc
tcgaatgtgacagagcccgattggATATCATtagttctttcaattttttg
catgaaagtagggtattatcgtaggtaaaagatggctgaagcagattttt
gcaaaaaagatttttcagctcaaaaaacgcatctttatctataagaacca
ctattaataagcatacatcaatgttcttagccaaattactcaattttttg
atgagacagatgtttcacagccccggtggaactttttcctcaatGGGTAG
TGAATTGAtaatatgcgagttgcgagttgcaagttgcgagttacgagttg
ctattttaagcaaataaaagtgcgagttgcgagttgaaaatttcacgtta
agacatcaaaatcgcgagttgcagatNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNTATAATAAATATTTACGATAGAATTGCTGTTTTCGCTCGgg
aaaacaacaagaaaatcctAGATTGGAAATAATAAATTGTACTCGTTCTT
TTGTGAGCATTGGCTCAATAGCTCTCATTCGTTCTGTCATGACCTtcttg
cgctactttgagaatcccgacACTTTTATCGCAACAGTGGAACTGCAGAC
TGAGATCTGCTGACCTCAATcccgtctcaccgatccactgGACCTTTGCG
ACGCAAGTTCATTTCGAATAAAATGAGGCTGCACTTTCAAGGCGCCTCAC
CTTTCGCACTGTTTTACACACCGACCGACTACACTTATACAACATGTTTA
ACACCATGTTATCCGGAcacttttgattgaataatcGCTTATGGTTTTTC
GAATAGACCCAAATGTGGAACAATCCATAGTAAATTTACTAGCAAGAGAA
AATAGAGAATTACTACCTACCTAGAATTTCTACCCTTTAAACTGTTTAAT
GGGAAGATCTACTTTTAGGAGCATTTAAAATAGAGGCTCAGAAAACCCGA
GCTATTTTTCTCGAGTTAAAAAACCGAGTTACGAAAAAAccaagttatga
cgtcattttgtacctTTTATGACATCATTCTAAatttcgtaactcggttt
ttttccgtgactttaaaatttcaagttatttcttttttttaactcaagta
tttttccttcctttaaattttcgagttatttctcgattttttttcggtcc
tttaatttttgagttattttccTATCTGTAGATTATCGAGTTATTTAgcg
ttcctttaaattttcgattaacattctcgagttatttttcgcttgatttg
ttatttttaaaaactaaaaaaaatcaatagaaatAGATCACCAATTCAAT
GCATGAATATATGTAGGGTATTTTATTAAGCTATAAATATCTATAACCGT
CACTTTTCACTTATATAAAATAATCTTGCTTGTGAAAATTGGCGTTACGC
ACAAAAAAGCTTGCAGAGAATTTGATAGTGTCGATGgaagaaagaaaatt
cgaaaaagaaatccatTTTTACGAATCACCGCCGACGGGATAAGTTTTCT
ACTCATTTTCTTTCGGGCATTTTTCATCtctaaattaaataaaaacttac
tagTTATCCTTGGGAGGTTTTGCTGTCGAAAAATGAATCACCATTgatga
aaataaagtttttataagTAAAGGCTCCCTTCGAAAACTGAATTTCGAAG
GCAGGAAAAGTCTACTGTgtgtgaaaactgaagcaaacaaagcatttCAT
TCCCCTACATAGATAGATACTTCTTTCAATCAAatctaaatttataaaat
tttataattttacttcattcttaaagtttttttaataataaaatcACAAC
TCAAATATTTGTTATGTtatgattgcaacattttcgaatctttcggtATA
AAATAGAACGCACGCGAAAAAACAATGCCAATGAATTCTTTTtcgaaatg
acaaaaaaacaccCATTCAGATCAGACGCTTGATGgtctaaaaaatattt
ctattttaattttcaactcgcacttttgatttttcaactcgcgattttaa
tttgcaactcgcgattttaatttgcaactcgcactttttaatttttcaac
tcgcgattttaatttgcaactcgcacttttgatttttcaactcgcgattt
taatttgcaactcgcacttttgatttttcaactcgcgattttaatttgca
actcgcacttttaatttttcaactcgcgattttaatttgcaactcgcgaN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttttcaact
cgcaactcgcacttttatttGGTTGAAatagcaactcgtaactcgcaact
cgcatatttgatagcaactcgcaactcgtaggaccaactcgcaactcgta
tgTTAAAAATCCACAATGGGTATGggaattttattgttccaaggtggaac
aaaaaaaactagtggggatggttttggagtgcaattcttAAACATTGAAT
cccaaatggggatgaaatttgagggtattttcccaccagggACGAATTTT
TGTCttattataattataatttgAATAATTGCAAAAGAATTAACCAAAAA
TTGTATTGGGCATAATAAAATACGTAAAAGTGATGAACACTTTACATGaa
tgtccattcctgaggaacgtttgAGGAATAGATGACTCTATGATGAGGAA
caataaagagaaaaagaaatatctccattcctgaggaacgagtgaggaac
gcttaaaaataacgtcagaaatgtccattcctgaggaacgagTGAGGGAC
GCTTGAAAATAATGTCATGAaagtccattcctgaggaatgttcgaggaac
gagtgaggaacACCTAAAAATGACGTCAGAAttgtccattcctgaggaac
gttcgaggaatagaTGAGGAATGCTGAAATGGAGTTGAAATatctccatt
cctgaggaacgagAGAGGAACGCTTACGAATAATGTCATAAATGTCCATT
Cctcaggaacgttcgaggaatagatgaggaaagctaaaacaaagttttaa
aatatccattcctgaggaacgctCGAAGAACGCTGAGGAATAGAAGAGGA
ATATTGAGGAATGGAGATGTCCGTGAGGAATGGTGATCGGGTTAGTAGTG
TCAAAAGATGTCGATTTTTAAGAAGActtttttattgtgaaaatttAGAA
TCAATAATtaacgtgtcaaaatttgatgtTGATTgcagtacatgtttttt
ttataagcattgcacttttAAGCATATCTAGgttcagatatggggaaaat
taagcatatgctaagcattaccttgagcctatgaaaaaagtataagcTAC
TTTATAGTATGGATATAAGCAGTATTATAGTAGTATAGCAGTATATAAGC
ATTATTAAGTATTAGGATATAAacatccctcaagcatttttcagctttat
taAGCTTTATTAAGCTTCcaacctaagcatctctgagcctgttttcggat
ttttatgcttataaaaaaacatgtaatgttATCAATGTTTTAAAATATGA
CATATGAAAATGGTAGGAAATCatgctttttgtaattttttggacctacc
tggaggtcctataaattaacctttgtccgtccgttcgttagttaccagct
tttctcgagattggctcattagttttttctgattttttgcacaatgatgc
aaattggcaatgcccaaaatgtgacggagcccgattttcgaagaaaaaaa
tttcctgtTGCCAAATCCGGAAATGTCCCGGAAAAAGcgtttttttggga
ttttctcgagattttatcattagttttttctgattttttatacATTGAGG
CGtgttagtactgccgaaaagatgttgaaaaccgttttgcaaaaaagttt
ttccggcctgtagaaccggaaatgtgccggaaatcgctgtttttTCGTAT
TTCCGTGACACTTTTTCAagttatttgatcatttttacagaaaaaggttC
TCTATGGTGATACCCAAAACTTTGCATCATTTAATTTTCGATAAAATCAT
TTGTtcaatccggaactccttaaaaatctccggaacagccgaaaaccggc
gtaaaacagatatccttcattttttcgagttatacttgacagattttcat
gatttttggcacaatgatgcaaaatggcaatgcccaaaatgtgatggagc
ccgattttcgaagaaaaaaaaaatttccgtccAAATATGCCGgtaaaact
ggttttttggcattttctcgagattttatcattagttttttctgattttt
tgctcaaaggtgcgtattaacaatggccaaaacatggccgagtccaattt
ttgagaaaaaaaattttccggccggaaatcgccgttttcatagtatgaac
cccccccttttttaagggggggggatccgagttttcaaggaaggctttat
aggggggatgggcaattttccagttaaaatggggNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNCATCTGACCTGTCCCAGGGGAGTTTctt
actgctcaaaataatattttctggtagtttagtccctggtctatccattt
gaagtgattgcaataaaaaattccagCCATACTGACCCCTAGAGGCCCGA
AAAGCCaataaggtctcaaaaaagtaccaaatttagcccaattttcctag
aaatcccaacattgtctgacctccaactcttctgttcctaaaagacaacc
gcctggtctcttaggatcaaaagagaaacctatgtgacctcctaccatta
attttttatcttgatttaaaaattttcttaacatNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNGTTCAAATTATCCAAAGAGAAGGAAAGGTTTAggaatatttt
gtacttttggaCTTATCTCTAAGTATTTAAGGGCAGAAAGGTTGATGGCA
AAATTGTTTTCAGGGGTTGGTAAAGTTCACCTTTgaagatttgagagttt
agaagcacattttgacagacttgatccttagatggtagatcaggaggtaa
agatcttgatgaatgtttgtactatccccatgaaacttgaatttcttgaa
tttctcgagctgtatttcatatttttttatgaaattttgcacaaaaatga
caatacctaaaaagtgacggagctcgattttcgaaaaacatttttttccg
gccaaaaatgccagaaatatgccggaaaaactgcttttttggcattttct
cgagattttatcattagttttttctgattttttgctcaaaaatgcgtatt
aacaatgatgcccaaaacatggctgagtccgatttttaagaaaaattttt
tcccgacccaaaatgccggaaatcgccgttttctggatttttattggact
tttttcttataattggttgttttttcttataattggttgttttttcattc
aaaaacattattaatagcaatgcccaccatcaagcatgttttaattttca
ataaaattgatttttgaagccggaactattgactgactgatttttttcat
ttttcttcttgcattgctatctaactttcatcatcaggtaggtccattca
gcatgttgcttcttttcattttatttgattatttctttACAGTAAAAAGG
TATTTCAAGGTGATGCCCAAAGCTTTGCATCGTTTAATCtcctaagaaaa
aaaaaacaaatagttAAAACGAATTTCCTTCATTTGCACTCTaaacagat
tttcatgattttttgcatagtgaaggaatataccgggtgcgccacaaaaa
agtttctctctttaaaacttattttctcgaaatctaaaaattttaaaaga
accattcttatttcattggaaagaagatgataaattttgatgggtcattt
attaaattcgattcattagatcaaaagttatgctcaattgaatagaaaag
ttactttcagaaagtgctgaaaaacgttaaaaatcggcctatcaaatcaa
acagaagcataattatatatgatacatcagtattttcgtttcagtcatta
acaaggataattagctgtctagaTGACCTTTTTTTGTATAAACATGGTAT
Aactataaaggaaggttgaatttcaatgaaatgaagaaaatttgtcgaaa
aaggccaaaaaatatcaaatacgggtttcgaggtagatccagtcttacat
agactttatccagtttagaaccaaaaatctgaggaaaatttcggtaaaag
taaattaaagtgattttgatgaagattttaaactctttcgaccacaggaa
aaagtcatcagATCCTACGGGTGGGAAAACCCCATTTCCAGCgctggaaa
ttttaaaaattatttgttcCGCGTAATTTTTCTCAAGCTGCAAAGTGGAA
TTTTTTAAGCCGGAGGATTTGCAAAATCCCACTgcggacttttttcaaaa
aatattttaatctgAAGTTTTAGACGtgtaatattgaaataaacCCTTCT
TACGAGAAAAAGCACATCACGCTAGTGTGAAACGTAATTttccccattgg
aatttcccTGCAATAAAATTTGGGTACAAATTTGAATCTTTAGGATTTCC
GATTTCACACCCTGGActttatctaaaatattttgatacatcGATACATC
GGTATTACTAATATCACACTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGAAACCCCTTTAG
AGTCTTTTTGATATATCTTAGGTGTGAATTTCAAATAAACACTTAGCAAC
TATATAGTCGACGAAAACTTACACTACAAAACTCTAAAGACAGACAAagg
aaaaaatcattatttccCACGGGTGGGAAAGTCGGATTAATAGGGTGTGA
AAGTCAAATTAATAGGGTgggaaagaaaaattaatagGGTGGGAAAGTAC
AATTAATAGGGTGGGAAAGTACAATATATAGGGTGGGAAAGTACAATTAA
ATACCCATACTTGTACTATGCATGCGTAaaaaaaaaccacaagtgaaaat
tgGGTCAAAACTGTTCAGATCGTATGCAAATCATTAACATTATAAGAGTG
TTTGTattcgatcagtgtgtaacacaacactaaaggtgaggcgtcccGCA
AGGGCGGCCTCGTTCGTTCGCAATAgacttgcgtcgcaagggctcagtgg
aATCGTCATCCGTCGTGCGGCCGTTCAATCGGTATCACATCGTTGTTCCG
CTGTTGTGAcaaagtgccgggattctcaaagtagcgcaagtacatgaCAG
AACGAATGGGAGCTATAGAGCCAATGCTCACGAATGATCAAATACATTta
acaatttatcaaataattgGTAATAGCTAGGTGGGGAATTGAAATTTCGG
CGTGTGATTTTCGATTTGACCTTTTGATAAGCTGGGTGTGAAGTTCAAAT
TTAGGTAtgtgattttcattttcactattCTCAGCACAATGTCGAGAGCA
ACCACCTCTTGCATGTTAATTTAGTTTTAAACCGCTGGAATTTGTTTTTT
CAACGTCGGATTTTATAGAGTGGTATTTGGCACTTCCCACCAGAGTAAAG
CATTGCAGTGTCCCACGCGTGGGAAACATATACTTTCCCACCCTTTTAAT
TTGACTTTCCCACCCGTGGGAActgatgactttttcctgtggacccttca
gtttcaaaatttatgtgtttagttactgaaaaatgttcttaatcatgtaa
aggctattgtgtttgccaattttaaaacaaaaatttgataggtcgatttt
taacaatttctagcactttctgaaagtaactttttcattcaattgagcat
aacttttgatctaatgaatcgaatttaaaaaatgacccaacaaaatttaa
gtttatctttcttctttccaatgaaataggaatggttcttttaaaattag
tctcaaagagagaaacttttttgtggtgcacCAGGTAGTAATTCTCAAAA
TGTGATGTAGCCCAATTTTGgaaatgaaacattttcttttgtcacaaaaa
aatccatctttgttttcattttagctATTCTCAAGACTCTGTGGAAAACC
AGTCCTTTCTACCCTGGAAAACAAACTTTTCAAAGAGGATTGTCATAACA
AGTTAGCAGAAATATCTGGTCCTATATCAAGTGGAAAGACAGAAATCCTT
TTGCATATCATACTGAATACTTTGCTACCTAAAACATTCAAAGATACCAG
TGTCAACGGCATAGAGGGCAAGGTAATTTTTATTGATACATCTTATAAGT
TTTCTGTTTTACGACTTGTCACATTGTTGGAGCAACGTTTATTGAATAAA
CTTGATCATTCAAATGTCGATTCACTGATTTCTGCACAGTTTGTGAAGGA
CTGCTTGAGCagattttataaaatttcttgCTCCTCAAGTAAAGAACTCT
TTGTTAGTTTGCTGGCGTTGGAACCGTTTTTACAAGCAACATCAGATGTT
TACCTTTTAGTGATAGATGATTTATACTCCTACCATTGGATTGACAGCCT
GGAAGCTGGACATAACAAATTCTCATCGAATTACTTAAAAAGTGTTGTAG
AAATCTTGAAACAATTTACAAGAGAATATGATATCAATGTTGTGTTTACA
AGGTCAGATATTTTACCATCTATTGTCCTGAATAATGTGGCAATAAGCAA
ATACACCATTCAAATTAaagatcaaaaacaaaacttaaatatTATTTCAA
AGAAGACTGGTAATGGATCATCATGTTTTCATTATAAGCTTGGCTATAAA
GGAACTACATTTTTATGAGTGTTGAAGAATCGATTGAACTTGAGTTGGAT
GGAAGTTTATTCTTGTCTTTGcttgttgtttccaatatttttggtaaagG
TTTGTTCTAATTcgtcttattttttcaaaagttattatTTTGACACTGAC
TTACTATTTAGCTTTGACCCAACCTCTAAACTAGCTGAAAATCATAGCTT
TTAACACTTACaaatctttttaaagaattgAAACAAAGATTGTTTGCTCA
ATACAGGTGTAAATAAAAAGCCATAAAATTTTTTATGGCTTTTGTaacaa
atattaagaatttcattttttgataaaGA Coding sequence (CDS) from alignment at scaffold_404:632296..645674+ >TCONS_00063894 ID=TCONS_00063894|Name=TCONS_00063894|organism=Clytia hemisphaerica|type=CDS|length=1800bp|location=Sequence derived from alignment at scaffold_404:632296..645674+ (Clytia hemisphaerica)
tgttttggtCACGTGCTTTCCAcgagattttttttcgatttcaagatttc
tctttttttcccgcCGAAAAAATATTCTCTCACTTCACTTTTCTTCGAAA
TGGCTTTACAGCAGCACGAGGATGACAAAATTTTGGAAGTTGAAACCGCT
TCACAGctATTCTCAAGACTCTGTGGAAAACCAGTCCTTTCTACCCTGGA
AAACAAACTTTTCAAAGAGGATTGTCATAACAAGTTAGCAGAAATATCTG
GTCCTATATCAAGTGGAAAGACAGAAATCCTTTTGCATATCATACTGAAT
ACTTTGCTACCTAAAACATTCAAAGATACCAGTGTCAACGGCATAGAGGG
CAAGGTAATTTTTATTGATACATCTTATAAGTTTTCTGTTTTACGACTTG
TCACATTGTTGGAGCAACGTTTATTGAATAAACTTGATCATTCAAATGTC
GATTCACTGATTTCTGCACAGTTTGTGAAGGACTGCTTGAGCagatttta
taaaatttcttgCTCCTCAAGTAAAGAACTCTTTGTTAGTTTGCTGGCGT
TGGAACCGTTTTTACAAGCAACATCAGATGTTTACCTTTTAGTGATAGAT
GATTTATACTCCTACCATTGGATTGACAGCCTGGAAGCTGGACATAACAA
ATTCTCATCGAATTACTTAAAAAGTGTTGTAGAAATCTTGAAACAATTTA
CAAGAGAATATGATATCAATGTTGTGTTTACAAGGTCAGATATTTTACCA
TCTATTGTCCTGAATAATGTGGCAATAAGCAAATACACCATTCAAATTAa
agatcaaaaacaaaacttaaatatTATTTCAAAGAAGACTGGTAATGGAT
CATCATGTTTTCATTATAAGCTTGGCTATAAAGGAACTACATTTTTATGA
tgttttggtCACGTGCTTTCCAcgagattttttttcgatttcaagatttc
tctttttttcccgcCGAAAAAATATTCTCTCACTTCACTTTTCTTCGAAA
TGGCTTTACAGCAGCACGAGGATGACAAAATTTTGGAAGTTGAAACCGCT
TCACAGctATTCTCAAGACTCTGTGGAAAACCAGTCCTTTCTACCCTGGA
AAACAAACTTTTCAAAGAGGATTGTCATAACAAGTTAGCAGAAATATCTG
GTCCTATATCAAGTGGAAAGACAGAAATCCTTTTGCATATCATACTGAAT
ACTTTGCTACCTAAAACATTCAAAGATACCAGTGTCAACGGCATAGAGGG
CAAGGTAATTTTTATTGATACATCTTATAAGTTTTCTGTTTTACGACTTG
TCACATTGTTGGAGCAACGTTTATTGAATAAACTTGATCATTCAAATGTC
GATTCACTGATTTCTGCACAGTTTGTGAAGGACTGCTTGAGCagatttta
taaaatttcttgCTCCTCAAGTAAAGAACTCTTTGTTAGTTTGCTGGCGT
TGGAACCGTTTTTACAAGCAACATCAGATGTTTACCTTTTAGTGATAGAT
GATTTATACTCCTACCATTGGATTGACAGCCTGGAAGCTGGACATAACAA
ATTCTCATCGAATTACTTAAAAAGTGTTGTAGAAATCTTGAAACAATTTA
CAAGAGAATATGATATCAATGTTGTGTTTACAAGGTCAGATATTTTACCA
TCTATTGTCCTGAATAATGTGGCAATAAGCAAATACACCATTCAAATTAa
agatcaaaaacaaaacttaaatatTATTTCAAAGAAGACTGGTAATGGAT
CATCATGTTTTCATTATAAGCTTGGCTATAAAGGAACTACATTTTTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063894-exon-scaffold_404-1491911889:632296..632453 | TCONS_00063894-exon-scaffold_404-1491911889:632296..632453 | Clytia hemisphaerica | exon |
| TCONS_00063894-exon-scaffold_404-1510915933:632296..632453 | TCONS_00063894-exon-scaffold_404-1510915933:632296..632453 | Clytia hemisphaerica | exon |
| TCONS_00063894-exon-scaffold_404-1575043694:632296..632453 | TCONS_00063894-exon-scaffold_404-1575043694:632296..632453 | Clytia hemisphaerica | exon |
| TCONS_00063894-exon-scaffold_404-1491911889:644620..645674 | TCONS_00063894-exon-scaffold_404-1491911889:644620..645674 | Clytia hemisphaerica | exon |
| TCONS_00063894-exon-scaffold_404-1510915933:644620..645674 | TCONS_00063894-exon-scaffold_404-1510915933:644620..645674 | Clytia hemisphaerica | exon |
| TCONS_00063894-exon-scaffold_404-1575043694:644620..645674 | TCONS_00063894-exon-scaffold_404-1575043694:644620..645674 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_404 | supercontig | scaffold_404:632296..645674 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008094 | DNA-dependent ATPase activity |
| GO:0005524 | ATP binding |
| GO:0003677 | DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006281 | DNA repair |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006281 |
DNA repair |
| molecular_function |
GO:0005524 |
ATP binding |
| molecular_function |
GO:0003677 |
DNA binding |
| molecular_function |
GO:0008094 |
DNA-dependent ATPase activity |
Blast
BLAST of TCONS_00063894 vs. Swiss-Prot (Human)
Match: XRCC2 (DNA repair protein XRCC2 OS=Homo sapiens GN=XRCC2 PE=1 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 2.270e-23 Identity = 67/207 (32.37%), Postives = 111/207 (53.62%), Query Frame = 3
Query: 141 VETASQLFSRLCGKPVLSTLENKLFKED---CHNKLAEISGPISSGKTEILLHIILNTLLPKTFKDTSVNGIEGKVIFIDTSYKFSXXXXXXXXXXXXXNKLDHSNVDSLISAQFVKDCLSRFYKISCSSSKELFVSLLALEPFLQATSDVYLLVIDDLYSYHWIDSLEAGHN-KFSSNYLKSVVEILKQFTREYDINVVFTRSDIL 749
E+ ++L +RL G+ L +E LF ++ H + E GP +GKTE+L H+ +LPK S G+E +V+FIDT Y F +LRLVT+ L+H S S + +K CL RF+ + CSSS L ++L +LE + + LL++D L +++WID + G + + L+ + L++ +Y + + T I+
Sbjct: 8 AESGTELLARLEGRSSLKEIEPNLFADEDSPVHGDILEFHGPEGTGKTEMLYHLTARCILPK-----SEGGLEVEVLFIDTDYHFDMLRLVTI--------LEHRLSQS--SEEIIKYCLGRFFLVYCSSSTHLLLTLYSLESMFCSHPSLCLLILDSLSAFYWIDRVNGGESVNLQESTLRKCSQCLEKLVNDYRLVLFATTQTIM 199
The following BLAST results are available for this feature:
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