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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063876 ID=TCONS_00063876|Name=TCONS_00063876|organism=Clytia hemisphaerica|type=transcript|length=2072bp
CTCAAAATTACGCAAACACGTGATTGCATTTTAGATGTGACTGCGCATTG
CATATTTTATGGCGATTCCCTGGATTGATGTAAACAAAACTCCAATCATT
GCCCTGTTATGAACTTAAACGTGCTATGAGAGTGCACAAGTCACATATCA
AAGGCAAAAGGTGACCCCAAACCAGCAAACTAGTCAGAAATAAATGAGCT
GAGCTGACCAGAAACAACATACACAAATATGCCTCCAGTCAGATCATTTT
TACGAACTGGTCAAGTCAGATTCAGCAGTGtttctgaTCTTACAAGTGGA
CACACTCAAGATGCACCAATGAAACCCTTACTATCTCATAATCATAATGC
TGGGGTCTTACCAGAGTCAAATTTATCTAATGCGAAACCGACAAAGACAC
AACAACATGGCACCAGCTCTAATTACATGGACCttaatgaattttttcaa
aaagttgaaaaatcttctgATGACATGTCATCTAATCCAGGGGATTTGGA
TCCAGACTACCCCAAACCCACTGTCGATCTTCTAGCAAGTCTTCTTACAC
TTggaaaaatgattcaaaatcaGAAACAACTTATTCAGAGACAGACTAAA
CCTATTGTAGCTCCTGGTATCACACCTACTCAAGAATTGAATGACATGAT
GGATATAGAAACCGAGATTTCCAGTTCTTCAAGGCAGGATGCATTTCCAA
ACAATTCTTTAGATGATCTTAATAATATGTATCAAGAAATGGATAAAGAA
CCATCAATATCATCATCAAACACAAGCATTAATTCAAAACGTCAGGTTGT
CCCTGAAGACATTAAAGATATGGATTATTGGAACCGTAGAAAACGTAACA
ATTTAGCAGCAAAAAAGTCTCGGGAAGAGCGTAGGAAGAAAGAACTTGAA
GTAGTAGAAACAACAAAAcaccttgaaaaagaaaactctCAGCTAACTTT
AATATTAAAACGTCTCACTTCAAGGAATGAGTGGCTTGAATCAAGACTTC
AAGATATTCGAAACCGTAGAAGGACTGATCAATCTATTGAATCATCTTCA
CTTTCGTCTTCGGCTGAAGAAAGCTGAATCGTTTAATgttggatttcatt
tttaaataattttattaCTGACTTGTTGTTTTCTATTTGTTGGGGCAGTA
TGATGAGCTTGAGACCTATAAACTTAATATTTTTGAGCCATTCTGAGTTT
GAATAATGATTGACATCTTAGCACAAAATACTTTTACTTGATTCATACAA
GTTaccttttaaagatttttaaggaTACAATATATACAAAATATATAGAT
TTTTAAAACTACATGTATTATCCAAATTTTCTTTGTACATTTCAGTAAGT
AAATCACCCTTGATCACACCTTACCCAGTAAAACTGTTGATAATTTATTG
AATTTACTGTAATCCTTTTCTTTCTAATTCACTTTGTTAGCAGATTTAGT
ACCTAGTTGGATTTTATAGAtatttttaattagattttttaagactgttt
tttttaCTCTAACTGCCATTTGTTATTTGCTCTGCTCCTACCTTGGGATT
TAGATTCTGAAAAGCTCTCGTTTATTTTGACaagcttatttttttattgg
tcAACTTTAACAATCGCATTTCATTTTCGCTTAAATCTACTCTCCCAGAA
ATGTTCTAACACTTAGAATAGTTTACATTTAGGGCAAAAACAGTGGGATG
TTTTTACTGCTTTATTTGATAGGTTTCTGATATGCCATTTTGTTAATATT
CgcagtatatatttttttcttgatatCCTCGCATTATCTCTATCGTGAAC
ATATTGTTTATTagtgtatcaaaagttatttatgagagatgttattataa
tataaaGATTGCTATCGTAGATTCTTCCTTGGATGCATACCTGGGTTgat
ctttttcctttttccaattttttggattttgatgGACCCAACACAGCTGT
Tttacccaatgaagtataagcccgaagggctagaagtcaatctccttggt
aggatttgaagccaacaaatcctaccaaagttgtgcggccttgagcggct
cgcctggtttttacacaaatga Run BLAST on NCBI protein sequence of TCONS_00063876-protein >TCONS_00063876-protein ID=TCONS_00063876-protein|Name=TCONS_00063876-protein|organism=Clytia hemisphaerica|type=polypeptide|length=282bp
MPPVRSFLRTGQVRFSSVSDLTSGHTQDAPMKPLLSHNHNAGVLPESNLS
NAKPTKTQQHGTSSNYMDLNEFFQKVEKSSDDMSSNPGDLDPDYPKPTVD
LLASLLTLGKMIQNQKQLIQRQTKPIVAPGITPTQELNDMMDIETEISSS
SRQDAFPNNSLDDLNNMYQEMDKEPSISSSNTSINSKRQVVPEDIKDMDY
WNRRKRNNLAAKKSREERRKKELEVVETTKHLEKENSQLTLILKRLTSRN
EWLESRLQDIRNRRRTDQSIESSSLSSSAEES Run BLAST on NCBI transcript from alignment at scaffold_404:247601..251196+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063876 ID=TCONS_00063876|Name=TCONS_00063876|organism=Clytia hemisphaerica|type=transcript|length=3596bp|location=Sequence derived from alignment at scaffold_404:247601..251196+ (Clytia hemisphaerica)
CTCAAAATTACGCAAACACGTGATTGCATTTTAGATGTGACTGCGCATTG
CATATTTTATGGCGATTCCCTGGATTGATGTAAACAAAACTCCAATCATT
GCCCTGTTATGAACTTAAACGTGCTATGAGAGTGCACAAGTCACATATCA
AAGGCAAAAGGTGACCCCAAACCAGCAAACTAGTCAGAAATAAATGAGCT
GAGCTGACCAGAAACAACATACACAAATATGCCTCCAGTCAGATCATTTT
TACGAACTGGTCAAGTCAGATTCAGCAGTGGtaagatttttctttctttt
gagttTCTGGCATGATCCTCTTCATCTTCAATCCAgaacaagaaaaataa
tatgTATATACAACATGGGTTGgagattttttcattcaatcaaaatgcaG
TTAAATAAAGAAGAGTTACTTTATATGTATTCTCGTGTTGATTTCATTTG
ATATAAAAAATTACTTACTTTACTACTTACTATACTTTGTATGGTGCCGA
AGAGTAGGAACAACAACCCTGCTGGACACAGCCGCACATTTTACAGTGGG
GCTTGATCTAAATGTCCAGTGGGAACTTTGGGTTATGTTAAAAAACGCTG
TACATTTTCCCACCGTACATCACCGTACAATGTACAGCGATGTCCAGACC
AGGGTCGTTATAGATAGGAACATTTTACACCAGACATTTTGTGTCCTGTG
GCTTTTGTAAGTTTGATAGATTGGCAGGGTTGTCCACGTCCATCTATCAG
GCGgtaaactaaaaaaattgactgGGGATTTTGTGCGTTTTCAGTGAAGA
TGTTCTCCTCATAAGCTGCAATtgcccaaaaaatcaaaaaccaaaCCCAA
AAGAGTTACATTTCAAGAATTTAGCAAAAACGCCAAAGACCTTGTAAAAT
AAGGAATCTTGTGAAAGTTTACCTTTGCTGTTTTGGGAGGGTGACACTCA
CTATAATTTCTGATTTTAGATTATAGGACTGTTGTAGAATGGCATTACCT
AGAGGAAAAATGGTACATCGCCCATTATAAGTTTAAAAATGATCATtatg
attttaatttcaatcaattttttttttagtttctgaTCTTACAAGTGGAC
ACACTCAAGATGCACCAATGAAACCCTTACTATCTCATAATCATAATGCT
GGGGTCTTACCAGAGTCAAATTTATCTAATGCGAAACCGACAAAGACACA
ACAACATGGCACCAGCTCTAATTACATGGACCttaatgaattttttcaaa
aagttgaaaaatcttctgATGACATGTCATCTAATCCAGGGGATTTGGAT
CCAGACTACCCCAAACCCACTGTCGATCTTCTAGCAAGTCTTCTTACACT
TggaaaaatgattcaaaatcaGAAACAACTTATTCAGAGACAGACTAAAC
CTATTGTAGCTCCTGGTATCACACCTACTCAAGAATTGAATGACATGATG
GATATAGAAACCGAGATTTCCAGTTCTTCAAGGCAGGATGCATTTCCAAA
CAATTCTTTAGATGATCTTAATAATATGTATCGAGAAATGGATAAAGAAC
CATCAATATCATCATCAAACACAAGCATCAATTCAAAACGTCAGGTTGTC
CCTGAAGACATTAAAGATATGGATTATTGGAACCGTAGAAAACGTAACAA
TTTAGCAGCAAAAAAGTCTCGNTCACTATAATTTCTGATTTTAGATTATA
GGACTGTTGTAGAATGGCATTACCTAGAGGAAAAATGGTACATCGCCCAT
TATAAGTTTAAAAATGATCATtatgattttaatttcaatcaatttttttt
ttagtttctgaTCTTACAAGTGGACACACTCAAGATGCACCAATGAAACC
CTTACTATCTCATAATCATAATGCTGGGGTCTTACCAGAGTCAAATTTAT
CTAATGCGAAACCGACAAAGACACAACAACATGGCACCAGCTCTAATTAC
ATGGACCttaatgaattttttcaaaaagttgaaaaatcttctgATGACAT
GTCATCTAATCCAGGGGATTTGGATCCAGACTACCCCAAACCCACTGTCG
ATCTTCTAGCAAGTCTTCTTACACTTggaaaaatgattcaaaatcaGAAA
CAACTTATTCAGAGACAGACTAAACCTATTGTAGCTCCTGGTATCACACC
TACTCAAGAATTGAATGACATGATGGATATAGAAACCGAGATTTCCAGTT
CTTCAAGGCAGGATGCATTTCCAAACAATTCTTTAGATGATCTTAATAAT
ATGTATCAAGAAATGGATAAAGAACCATCAATATCATCATCAAACACAAG
CATTAATTCAAAACGTCAGGTTGTCCCTGAAGACATTAAAGATATGGATT
ATTGGAACCGTAGAAAACGTAACAATTTAGCAGCAAAAAAGTCTCGGGAA
GAGCGTAGGAAGAAAGAACTTGAAGTAGTAGAAACAACAAAAcaccttga
aaaagaaaactctCAGCTAACTTTAATATTAAAACGTCTCACTTCAAGGA
ATGAGTGGCTTGAATCAAGACTTCAAGATATTCGAAACCGTAGAAGGACT
GATCAATCTATTGAATCATCTTCACTTTCGTCTTCGGCTGAAGAAAGCTG
AATCGTTTAATgttggatttcatttttaaataattttattaCTGACTTGT
TGTTTTCTATTTGTTGGGGCAGTATGATGAGCTTGAGACCTATAAACTTA
ATATTTTTGAGCCATTCTGAGTTTGAATAATGATTGACATCTTAGCACAA
AATACTTTTACTTGATTCATACAAGTTaccttttaaagatttttaaggaT
ACAATATATACAAAATATATAGATTTTTAAAACTACATGTATTATCCAAA
TTTTCTTTGTACATTTCAGTAAGTAAATCACCCTTGATCACACCTTACCC
AGTAAAACTGTTGATAATTTATTGAATTTACTGTAATCCTTTTCTTTCTA
ATTCACTTTGTTAGCAGATTTAGTACCTAGTTGGATTTTATAGAtatttt
taattagattttttaagactgttttttttaCTCTAACTGCCATTTGTTAT
TTGCTCTGCTCCTACCTTGGGATTTAGATTCTGAAAAGCTCTCGTTTATT
TTGACaagcttatttttttattggtcAACTTTAACAATCGCATTTCATTT
TCGCTTAAATCTACTCTCCCAGAAATGTTCTAACACTTAGAATAGTTTAC
ATTTAGGGCAAAAACAGTGGGATGTTTTTACTGCTTTATTTGATAGGTTT
CTGATATGCCATTTTGTTAATATTCgcagtatatatttttttcttgatat
CCTCGCATTATCTCTATCGTGAACATATTGTTTATTagtgtatcaaaagt
tatttatgagagatgttattataatataaaGATTGCTATCGTAGATTCTT
CCTTGGATGCATACCTGGGTTgatctttttcctttttccaattttttgga
ttttgatgGACCCAACACAGCTGTTttacccaatgaagtataagcccgaa
gggctagaagtcaatctccttggtaggatttgaagccaacaaatcctacc
aaagttgtgcggccttgagcggctcgcctggtttttacacaaatga Coding sequence (CDS) from alignment at scaffold_404:247601..251196+ >TCONS_00063876 ID=TCONS_00063876|Name=TCONS_00063876|organism=Clytia hemisphaerica|type=CDS|length=1698bp|location=Sequence derived from alignment at scaffold_404:247601..251196+ (Clytia hemisphaerica)
ATGCCTCCAGTCAGATCATTTTTACGAACTGGTCAAGTCAGATTCAGCAG
TGtttctgaTCTTACAAGTGGACACACTCAAGATGCACCAATGAAACCCT
TACTATCTCATAATCATAATGCTGGGGTCTTACCAGAGTCAAATTTATCT
AATGCGAAACCGACAAAGACACAACAACATGGCACCAGCTCTAATTACAT
GGACCttaatgaattttttcaaaaagttgaaaaatcttctgATGACATGT
CATCTAATCCAGGGGATTTGGATCCAGACTACCCCAAACCCACTGTCGAT
CTTCTAGCAAGTCTTCTTACACTTggaaaaatgattcaaaatcaGAAACA
ACTTATTCAGAGACAGACTAAACCTATTGTAGCTCCTGGTATCACACCTA
CTCAAGAATTGAATGACATGATGGATATAGAAACCGAGATTTCCAGTTCT
TCAAGGCAGGATGCATTTCCAAACAATTCTTTAGATGATCTTAATAATAT
GTATCAAGAAATGGATAAAGAACCATCAATATCATCATCAAACACAAGCA
TTAATTCAAAACGTCAGGTTGTCCCTGAAGACATTAAAGATATGGATTAT
TGGAACCGTAGAAAACGTAACAATTTAGCAGCAAAAAAGTCTCGGGAAGA
GCGTAGGAAGAAAGAACTTGAAGTAGTAGAAACAACAAAAcaccttgaaa
aagaaaactctCAGCTAACTTTAATATTAAAACGTCTCACTTCAAGGAAT
GAGTGGCTTGAATCAAGACTTCAAGATATTCGAAACCGTAGAAGGACTGA
TCAATCTATTGAATCATCTTCACTTTCGTCTTCGGCTGAAGAAAGCTGAA
TGCCTCCAGTCAGATCATTTTTACGAACTGGTCAAGTCAGATTCAGCAGT
GtttctgaTCTTACAAGTGGACACACTCAAGATGCACCAATGAAACCCTT
ACTATCTCATAATCATAATGCTGGGGTCTTACCAGAGTCAAATTTATCTA
ATGCGAAACCGACAAAGACACAACAACATGGCACCAGCTCTAATTACATG
GACCttaatgaattttttcaaaaagttgaaaaatcttctgATGACATGTC
ATCTAATCCAGGGGATTTGGATCCAGACTACCCCAAACCCACTGTCGATC
TTCTAGCAAGTCTTCTTACACTTggaaaaatgattcaaaatcaGAAACAA
CTTATTCAGAGACAGACTAAACCTATTGTAGCTCCTGGTATCACACCTAC
TCAAGAATTGAATGACATGATGGATATAGAAACCGAGATTTCCAGTTCTT
CAAGGCAGGATGCATTTCCAAACAATTCTTTAGATGATCTTAATAATATG
TATCAAGAAATGGATAAAGAACCATCAATATCATCATCAAACACAAGCAT
TAATTCAAAACGTCAGGTTGTCCCTGAAGACATTAAAGATATGGATTATT
GGAACCGTAGAAAACGTAACAATTTAGCAGCAAAAAAGTCTCGGGAAGAG
CGTAGGAAGAAAGAACTTGAAGTAGTAGAAACAACAAAAcaccttgaaaa
agaaaactctCAGCTAACTTTAATATTAAAACGTCTCACTTCAAGGAATG
AGTGGCTTGAATCAAGACTTCAAGATATTCGAAACCGTAGAAGGACTGAT
CAATCTATTGAATCATCTTCACTTTCGTCTTCGGCTGAAGAAAGCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063876-exon-scaffold_404-1491911889:247601..247880 | TCONS_00063876-exon-scaffold_404-1491911889:247601..247880 | Clytia hemisphaerica | exon |
| TCONS_00063876-exon-scaffold_404-1510915933:247601..247880 | TCONS_00063876-exon-scaffold_404-1510915933:247601..247880 | Clytia hemisphaerica | exon |
| TCONS_00063876-exon-scaffold_404-1575043694:247601..247880 | TCONS_00063876-exon-scaffold_404-1575043694:247601..247880 | Clytia hemisphaerica | exon |
| TCONS_00063876-exon-scaffold_404-1491911889:249405..251196 | TCONS_00063876-exon-scaffold_404-1491911889:249405..251196 | Clytia hemisphaerica | exon |
| TCONS_00063876-exon-scaffold_404-1510915933:249405..251196 | TCONS_00063876-exon-scaffold_404-1510915933:249405..251196 | Clytia hemisphaerica | exon |
| TCONS_00063876-exon-scaffold_404-1575043694:249405..251196 | TCONS_00063876-exon-scaffold_404-1575043694:249405..251196 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_404 | supercontig | scaffold_404:247601..251196 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004827 | bZIP |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003700 | transcription factor activity, sequence-specific DNA binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| molecular_function |
GO:0003700 |
transcription factor activity, sequence-specific DNA binding |
Blast
The following BLAST results are available for this feature:
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