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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063859 ID=TCONS_00063859|Name=TCONS_00063859|organism=Clytia hemisphaerica|type=transcript|length=462bp
TTTTAAGCATGTTTTTTTGCCAACGACTGAGTTAAAAGCCGCAAAGTTTG
GTTCTGTTTTTACTAGAATCGGTTCTCTAGtgaataaatttgaaatttac
caCCGAGACCTATAATCCATTAATCCCGCAATCAGGTTAATGCAGCTATG
AACAAGTAACTGATTCCTTTAACGTTTAAATTTGGACCTTTccagttttt
gagaaatcttAGGGAAAAAACGGTCCGATTACTAAATTGTTGATAAACAT
GAAAAGGATATTTTGTTTATCTTCCCCAGGTCTTTCCAAACGATCGTAAT
CATCATCATTGCTATCGACATTATGATCATTCGTTTCATGAGATGTTTTA
CATGCTCCACATTTACTTGGATCAACTACCAGCAAATACAGatttccatt
gttttggtaATTGACTTGTGGCTTTTGCATCCAACAATAAACCGTGTACC
ATTCGATGGTTG Run BLAST on NCBI transcript from alignment at scaffold_404:118650..125441+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063859 ID=TCONS_00063859|Name=TCONS_00063859|organism=Clytia hemisphaerica|type=transcript|length=6792bp|location=Sequence derived from alignment at scaffold_404:118650..125441+ (Clytia hemisphaerica)
TTTTAAGCATGTTTTTTTGCCAACGACTGAGTTAAAAGCCGCAAAGTTTG
GTTCTGTTTTTACTAGAATCGGTTCTCTAGtgaataaatttgaaatttac
caCCGAGACCTATAATCCATTAATCCCGCAATCAGGTTAATGCAGCTATG
AACAAGTAACTGATTCCTTTAACGTTTAAATTTGGACCTTTccagttttt
gagaaatcttAGGGAAAAAACGGTCCGATTACTAAATTGTTGATAAACAT
GAAAAGGATATTTTGTTTATCTTCCCCAGGTCTTTCCAAACGATCGTAAT
CATCATCATTGCTATCGACATTATGATCATTCGTTTCATGAGATGTTTTA
CATGCTCCACATTTACTTGGATCAACTACCAGCAAATACAGGTTGGTATG
TACCACACTCGAAATCGTAAAATTCCTATGGTACAGTTGAGATTAACTTT
AACACCGATTGTTAACCTTACtgtcttaaccctttaagtgccaatgtcga
gtGTAAACGATATGGGCTGTATGCCCAGTTTCTCTTTCAGTCAGAttcgc
gcagcgggcctgatgCTTTAAACCCCCTAACCTACCCCCTCCTAGCCGCC
GCCAACCCCGCACTTCCTAAATCGGGCTATCCAATGAGCTatgaacgagc
ttctaactccttctagatccggagatgtaagcctttaaagtttgacctag
cgatttaaaaaaaggaCCGTGGCACTTAGAAGGGTTAAATTGTTAATCGC
CTTCTTCCAAATCGATGCTTGATGTTTACAACCCTTTCTTACAGCCTCCG
TGGAACTTTTATCCTCAGTGAGTATGAAAATTCCAattaaaatcccaatg
gggatagaaattctattattccaaggtgaaaaatccagtgggtttttagt
gcaatttttaaacattgaattttgagtgtggatgaaatcaaagtcaatat
cccagtggggctgaatttcaagggtattttcctaccgggacgaatttttt
ttgcgaaatttttcaGTGGTGCTGTGATCCCAGcgggtttgtgacacagg
ggtgtatgttTGTTCGTATGTTTCAGATCATTCAATCTCTAGAGATGAAT
TTTGTCTTTTGATAGCCTTATTTAATTTGatctgaaaatctgaaaatctg
aaaatctaggTCAATAAGACTCTACACAGTTATCATATGGAGGAggatat
ttttaaaataatactACCTCAAGCATTTGTCTTTTGAATCACACGTGGCC
ATTCCTAAGATATGAAAAGAAGtataaaattatgattttttttagtaaAT
CAAAAACCTGAACCAGCATCAACCGTAGAGAacattgtaaaaaatgaaac
taTCTATAAACCAATCTATTTTGTTTGACACTATCCAAAAGATACAAGTT
TTAAGGACAATGGGCTATTCTTTTTCATAacccatacaggggggtgggcG
AATTGCCAGTGGGTAAtctgagaagaatttccagggggtgttttttcatt
tttccaaggcgTTAAAAAGTTAAAGTTTCCAGGGGTTAAAAGACTGATTT
CAGTTCGTATgaaaaggtatgaaaagaattttccaggGGTTATCCACGCA
TATAGTTTTTTATGGAACATCCCAATAtaccaaaatttctttacaacaTT
TTCGACTTTTGGTCAGAGTGTGGACTGCGTGGTACTGTGACAACTCTTCT
GTAGTGAACCGTCGCTTGCAAGTGTCATTTTAAATATGTTATCTAGGGCT
TAAACATTACCTTGGGCTATAATTGGTTGCTCTTGATCACGTGATAAATA
CATTGTTGTGTTCTTGACGCAActaacataaataaaatcttcattttcga
tCATAGTTCGAGCTGAAAAGTAGAGCAACAAAATTAAGATTAAGTGATTA
GATGAAAGCTCATTGTGTAGAAAAATTCAGTTTATTTACCAGTTTTTGTA
CTGGACAAATGGTGTCAAATAGGAGACTTACTCCCAGAGATCtttataac
acccccttctcacagacccggtaggattttttcagccagtgaggATAAAA
ATAACTCGATActcgatattcccatatttttttggccggggatttcaatt
attttgttccTCAGAAAATACAGTTGGGATTGGGAAAAGAGCATTatgtt
ttgcagtgaggattggttcctttgattattttcagtggggacaaaatttg
gatgataattttccaccggggacgttattttggccgatttttccagtggg
aaggggccCCAGtcggtctatgagaagggggtgctATATAACACATCGTT
AGTATTAGGCTATAGATTTCACAGATACGGCGTATGCAAGACAAATAGAC
CAACCAAAACACGACCACGTCAGGGAAGTGGTAGGATCTCCTACCCAGtg
caaaattttgccaaaacaTCGTCCACTGGGATAAATGTAAATAATAAAGA
TTAACTCTCATATTTGAAATATTGCCCTTTCTAAAAGCATCCAATCATTC
ATTGGAATTTTGATTAAAGTGTTCATCAGGGCACTGGGACAGAAAGAGTA
CAATGCCTTTACCTGAAGAACCAATTGAAGTCCACATCGATGTCCAAATA
CtgcaaataaaaagataataaaaTGGATTCTTTGGTAATTGGGTTGAAGC
ATTGGTTGAAATATGGCAAGCAAGACAGATTATAGTGTACACTTAAAGTG
AAAAGAATAAATTGTCAAATAGTTAAATAGTTAAATCTCGAGAGTCATAT
CATTCTCCTTGGGTTGtcatatataattttcaaatttgaatatTTGGTTA
AAGAATGGCGACCAGAATACTATAATTAGTTAATTAAGTTACTTACAGTG
GCCAGACATCTTTGTCTCACTGGTCTatcattatttcattatttcatttc
attcattATGTTCATTTCAAAATGACGATATTATTAAAAAATCTCCTTTT
ATtggaagaaatttgaaaatattgaaggaACTTACGAAAATAAACTGGTT
tgaagtaatgaaactaacaaAGAAATAATCCaagtgaaaatctgaaaaaa
aatccattgtTTATGGTTGTTAttgattataatatttcaacCTTGGTAAT
GCTGTTATCAATAAATATCACTATGCCAATTTTAACAGATTACAGTTTGC
ATCGCTTGTAATCAGTTTCAAAGTTAAAACAACAGCCTGGTTAGTTGAAA
TAACCAGAGAAATATGAGAAGGGATTTTTGAGTTGAATGCTCTTCTAGCT
ATGTTATTTTCAAGCTTGGAGTAGATTAGATGTTGTATCTTTGTAGATTT
AACGAGAAGAAACTTACATTTTTCAGTTCAGCTGCGCTACTGTCATTATT
TGTCGGTAATTTACACGAAGCTTGATAGTCTGGTAGCGTAACCCTGAAAT
GATATTGTAAAGCATACTCCAAAGTAAAAATGCAtccaaaacaaatattt
ttttcaggcaTAAGtaagatttttaagaaatatgTAGCTCTTGGGTAAAA
ATTGTTCTCATTATAAATTGAAGCAAGCAGACTTACAAAGTAAAGAAGGG
AGCTTCTGAGGGTAGAAATACCAAAATTCTGgtaataaatttctaaaata
ccGGTACAGGAAAAACCTCTGTTGAAATCGCCAAATAGCGACGTACCGGA
TTACCGGTGGAATAATTCAGCGGTACTgacagtttttttttgaaatccaa
attcaaaatttcttcgTGACTTCTTTGGAATGCTGATGCCGAAATACAAG
TACTGGTAGGTAATTTAAATCCTGGTAAATCTTTATGTAAACAGCGATAC
AATAAGTAGACATCTCAAATAACGGAGTACTGGTAATTTCActttcaaat
accggcataccggtagaaaaaaagattaaatgaCTCCGTAAAAGAGTCTC
CCGAAAATTTAGACCAGTTCTTACACTTGATAGAGGGAGTGTGACTTATC
TTCCTCGATCAATTTTCGCATCACATTTTGATCAACTTCTCCGAAAAATA
ACCCAATCTGTTAAAGAAAGTCAGGAGATCAATTGTTGTTACAAAAAAGA
TTTGTGGTTCTCCCTTTCAACCTATTCTTGCTACTTATAGCTGGTCACTG
TAAAGAAATTAGCAATCTTACGTCTGCTTCTTCGTTTGAGGCGACAACGA
AACCATTTTCATCCAACAGATAACAATATAAACCCTCCACCTGTCAAAAA
ATATCGATCAAAAAAAACATACGGTCTGATCCTTTAGTAAAGGTTTTCTT
gtcattttgtgatttttgaaactACAAATAAGCAAACTTTGGCAAAATCT
AAAAGCTCTGACCCCTATTTACTCTGATTTACTATGATTTGTGTTTGGAT
TCCTGAGATATTTTATAAACTTTGTCCTTTCACGCATACTGTCAAAATTT
TGATCACACCATCGCACACCAAAAAATCGAGACCACTTCAACACGCCAGC
AAAAAATCACGCAAACCACTAGGggtttctttaaagaaagaaagaagaag
tgACAATACCTGATTCTTCAAATGACGATCACAAGTCAATCTGCCATCAT
AAAGATGTTCATCAGGGAactcttttgttttttcaatgaaattagTCGTC
ATAAATTTTTCGTAAGACATTTCTACACCAGTGACTGgaaagaatgaaaa
tttaaaaaagatttcaaatctTCAACCTAACCATCAATCGAGCAACGACG
GTGTAtaggattttctttttttttNGAATCTCTAACCTAACCATCAATCG
AACAACGACAATGTTtaggattttcttttttttgtcatcAAAAGATACGT
ATTTATTTTCGCTGGGATATGATTGAATGTCTGTCAATGTCTACAAAAAC
ACAGTAACGGGCGTAGTTTGTTGATAAAACGCAGTGATCGAAAGGCAGTG
CTTAGAATAGAGCTTTGGGAAAGACTCCTTTCGGATGAATTACCTGCTAA
AGTGATACCTGCTTTCTTTTGAAGAATCGGATTATGAATTGATATCACGT
GATCATCTTCTCCTCTTCCTATTGGTTGTTGAAAAACAACGTGAACTTCT
ATGCGATGTGTTTTTTCAGTTGATCCTGCTACTAGGGGTTTTCTATAAGG
TTTTGTGAGGTTAATCCGAAAGAAGACCTAGATATACTTTTGTCTATCTC
TATACTCTACATGCAATATTTATCATAAGTTATAATAACTGGGAGGATGG
AAAACTTTTATAGGGTGATTTAGGACGTTGTTGGACTTTCAAAAACTGGC
TTTGAACTATCATATCCTACCTTTTATCAAAGAGATGGTTAGCCGATTTG
GAATGTGATTGGCTCGTTTGTAAAAATCAAAAGGATCGTAACTTTCGCGT
GAAATGCTCTCAAAGCCACCGTCAATAAGTTCgctattaaaaaaattgaa
agtatcACACCTGACTTTAACCCTTTAAAGTCTCCACGgtcctttttttc
taagtttttaaataaaatcgctaatttaaactttaaaggctttttattat
actcgacattggcacttaaagggttaacgcCAAACAGCAATGTTCTTTAT
TGTTCTTCATTGATAATTTGCTTTGAGTTTTGCTTGTAAAGAATCACACT
GAGGCACGGGGGTCTCGTTTGCATCAAACTTTCttaccttcaaaatttat
tccTTAATAAAGTTCTCTCAAAAATCATTCAATCTCAAAGGATTTTTTGT
TTGAGACAAAAAGCACATCTGGAAACCTTGATAATAATCTAATTCTTAAA
GAATAACAAAAATGTGTACTCATTACCTATTATTTTTCCTCTTGATACTT
TGTATAACTCCCCAATGCGTTCGAATGAAAATATGATTGATCCCATTCCT
AGAATATTAAAGAACTAtcgtacacccctgtgtcacagacccgccgAACC
CCAccctcactggaaaatttgaccaaaatttcgtccccggtggaagaATA
CCGTACAATTTCAATCTCACTGCGAATtggctttgatttcatcccaatcc
aaaattcaatgcaaaaaattgcactccagaACTATCCCAAGAAGATTTTT
CCActtaggaacaatagaatttttctccAAATTGGGTTTTCGATAGAAAA
TTTTACCCTCGCTataggaaaaagtttcaccggggctgtgagacaggcgT
GTTACCGTAAGTATCACAATGTATGGACAAAACACTGGTAGGGAAGATAG
CGATTCTAATTCAGCGTGCGTTCAGTGAGAACAAAAGAAGCCATAGCAAT
CATCCAGGATATTGGATGAAGACTGAACCAATCAAATTTATAAATAACAA
ACATAGAATGATGAGATGAATATAAATATATGTAATCTTTTCAAGTTTAA
CGTAAAGATAAGTGCTCTCCCCTTTAAAAAATAACGTGAATGAGACATAC
GCGATAAGATTCTGTCCGTCCGTCCTCATAGGTTAAATTTCTAAAGCTAA
ACTATGATTCTCACAGCTCCTCCAAACTAGAGTAAATTTATTTGCactta
tttatttttacatctATCTCAATTTTTGTATTCTAGAACTGGCTCTTACG
TGGTCAGATTTTAGTTTTGTGCTATCCATGATCTTCAACAGGACGCAGAA
GAATCCCCCTTAAAAAGTAGATCCCAGTTCTACCATTTTACCTAAAAAAC
CTCCTTTGCTAGTAGATAACCTGGGAAAAGCTACAATGTGGAATCTTACT
CTTCAATTTTCTCCCTTTTagatttccattgttttggtaATTGACTTGTG
GCTTTTGCATCCAACAATAAACCGTGTACCATTCGATGGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063859-exon-scaffold_404-1491911889:118650..119040 | TCONS_00063859-exon-scaffold_404-1491911889:118650..119040 | Clytia hemisphaerica | exon |
| TCONS_00063859-exon-scaffold_404-1510915933:118650..119040 | TCONS_00063859-exon-scaffold_404-1510915933:118650..119040 | Clytia hemisphaerica | exon |
| TCONS_00063859-exon-scaffold_404-1575043694:118650..119040 | TCONS_00063859-exon-scaffold_404-1575043694:118650..119040 | Clytia hemisphaerica | exon |
| TCONS_00063859-exon-scaffold_404-1491911889:125371..125441 | TCONS_00063859-exon-scaffold_404-1491911889:125371..125441 | Clytia hemisphaerica | exon |
| TCONS_00063859-exon-scaffold_404-1510915933:125371..125441 | TCONS_00063859-exon-scaffold_404-1510915933:125371..125441 | Clytia hemisphaerica | exon |
| TCONS_00063859-exon-scaffold_404-1575043694:125371..125441 | TCONS_00063859-exon-scaffold_404-1575043694:125371..125441 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_404 | supercontig | scaffold_404:118650..125441 + |
Blast
The following BLAST results are available for this feature:
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