TCONS_00063857 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063857
Unique NameTCONS_00063857
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1285

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063857 ID=TCONS_00063857|Name=TCONS_00063857|organism=Clytia hemisphaerica|type=transcript|length=1285bp
TTAGAAATGACTCAAGATATTAGAAAAAGATACTAACAATGTCAAATTTC
AATTATAAAGCAAGACGTGTGCAAAAACCTAGTTTGAATATTGCTTCAAA
AAGTGATACCAGTTTTGGTCCCTCTCTATCAGCACTGAATGATGCATGGT
CTTCTATTGCAGCTACAAAGAAAGAGATTAATCAAGTAAACCATAGAATA
AggcaagtatcaagccctattGGTTTTTACCATGATGATGAGGCAGATGA
ATGCTTACCGCCACCTCCACCCAAGAATAAGAACAATCCAAACATTGAAC
GAAGGACTATTTATCAAATGCTTGAACAGACCAAAACACGCAAAGAAAAC
ATTCCTCCTCCAAGCTATCCACAACCAAACCTCCATAGAATTCCACCAAG
CGTGGATGAAATAAACACATACAATATACATGATGAACATCCACAACGCA
ATACATCACTGCGATCATTGTCCAAACGAGAAAGAAAAAGTGAGGCTCTC
AAACGACTGAAAGAGAAGATTCAACagcaaaaaattaattcaagcaCGTC
AACTGTTGAAGAGGCTTTTCCATATAAAACTCATCACAATGAGAATGATA
TTGTGCAGCATGAAGATGAACGAATTCCACAACAAGCAGCCATGACACGG
AAAGTTGCTCATGCACCTACTGCTCCCACTTATACTGgctttaattTACA
ACCAGATGCAACTTTTGTCAAATCGACAGTCAAAGTTTCCCCACAAATGA
AGAGGAAATCGAAAGCAAAAAAAGCTTCACTTGACcaagcaaaaactaat
aaacgtATTGCCCATGAcagaaaaaaagcaaaagttTCAAAGAACCAACG
AGTAGTTGCAACAAAGAAATCTACCACAAACAATATCATTACAACTTCTT
CATGGAGGGTGGGGCAACAAATCCAAcggaaatataaaaaagaaatgacC
ATGCACAAAGAAGAGAAAAGTGAATGCAAAAGTGATTTGGCTACCACCAC
CAAAACTAACCAAACATCAGACCTCAAAAGTGATAAAGaaCAATAATTCA
ACTGATAGTCATTCCAAAAAAACAAGCTCAAACCTTCACTCAGAACTTGA
TAAAGATTTAATATCGGAAAAAGCAGATGAGAAAATATTCCCTGACCATT
CAAAATCACCAGTTAGCGAAGAACAGAAAAGTGATACAGACTCACTAAGA
GGTTTGGAACAACTTCAAGATGATGTGCTGACAAAAACAGCCAAAGATGT
GATGGCAGAACTGCAACACAAAGATGAAACTTCAC
Run BLAST on NCBI

transcript from alignment at scaffold_404:97667..102775+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063857 ID=TCONS_00063857|Name=TCONS_00063857|organism=Clytia hemisphaerica|type=transcript|length=5109bp|location=Sequence derived from alignment at scaffold_404:97667..102775+ (Clytia hemisphaerica)
TTAGAAATGACTCAAGATATTAGAAAAAGATACTAACAATGTCAAATTTC
AATTATAAAGCAAGACGTGTGCAAAAACCTAGTTTGAATATTGCTTCAAA
AAGTGATACCAGTTTTGGTCCCTCTCTATCAGGTATTTGAGTGTATATAC
TCTAATGTTTTTTATCTTGAAACAAGTCAAACTTTTACCCTACACACACA
CCACACCATTTTTCCTGAATTTCTTTTTCTGACCCTTGATGTGTTTCTTT
TCCTATGTTTTCTGTTCTTTATTCTCTAGATtatttagcctggatatcca
agctcgaaattttagaaaaaactaaatttacctcaatatacaaagttcta
aaattatagagcttggtctccccaGAAAATGAAAGtacaaacccatgttt
ccaaaactttccctgccaacccagggcagcaaaacagaaattaataaaaa
gcaacCTTGCAAGATCTAAACCATTTTTAAAACATCCAAAGATTACACCA
AAGTCCATAAACAAGTttgcatgcattatcatgaccaaccatgttttctt
ggaaaatgaacttgcctctgttttcttctttttcatgttttcatgtaaca
gaaagctctatcttcgCTAGCAAGTAGAGGGTTACcatatttttgtttca
gaattGCTCTGCGTCATGTAGATCGGTCCTGAGAATGCAAAACGCTCTat
ggagaccaggctgtaaaccagaacataaaacattaaaaactagactgtga
aatagtttacagcctggatatccaggctatagaTTATTGAGCTGATTTAC
ATACACTCAAAATCTATTTTGGCTCAGATTGCTCTTAATTCAGTCTtaga
ttttggccaaaatttgagtcaggtgttcttataaaaaaatttttttgttg
agaATACTATCAAATCACTTACGCAAACACATTTCTAATAGTAAAACATT
CAGAATTAATTTATAAAGGTTAGTATTCTAATTAAGACTGTCActctttt
ttttaccttttgttTTAGCACTGAATGATGCATGGTCTTCTATTGCAGCT
ACAAAGAAAGAGGTTGGTATTTTTAACATCGATCAATTCTTCATTCTGGA
GTTttaatatttagaaagtagacaTTCTAATTTAAGATTTGAAAATGACT
TTTTGATTGATAGTTATAAGGTTTTTttattcacttttcgaaaagtgaaa
agttaaaaaaaaaacgcaaTAAAAAATAATCTACAAATTAATCTATAAGG
CCCCTACAACTTTATTTTTTAGACTTAAGAAGAAAAATTGCCCTACTGTA
ATTTTTTCCTGGGTAATAATGGTATCAATATTTTCAATCNcttaagaaga
aaaattaccctACTGTAATTTTTTCCTGGGTAATAATGGTATATAATCAA
TATTATAACACATGGCAATGCACTTCTTATCATATTATATCATTCCTTTT
AAAATTATAGATTAATCAAGTAAACCATAGAATAAggcaagtatcaagcc
ctattGGTTTTTACCATGATGATGAGGCAGATGAATGCTTACCGCCACCT
CCACCCAAGAATAAGAACAATCCAAACATTGAACGAAGGACTATTTATCA
AATGCTTGAACAGGTGACAACTCAAATTCTGTTATTGACACAATATTCTC
CTTTCCAAGCGCCTTTTAATGTTTATAATGTAAGAATTTCACTAGAAATT
GACTACTGATACTCTGCAAACAGTCACTCTAAAGGCCATGGCTCTGTAAG
AGAATCTGCCCTGATTGGCTCActgatttgatatttttcatcaaagtttg
gAATGAATTTTAAATGAGCTTTAATTAATCACAATGATTGGCTAAAATGC
AACACTCGCACCAAAATCTAGTACCAATTAAAGCAAACTTTAGAACCAAG
TtgctttcatttttgttttgactgaACAAGCAGGTCAGATTATCCCTTTA
GAACGGATTGTGATATGCACAGAATGGATAGTCTGTTATAAGATTAGACA
TGTTTCTATCTTCTCTAGACCAAAACACGCAAAGAAAACATTCCTCCTCC
AAGCTATCCACAACCAAACCTCCATAGAATTCCACCAAGCGTGGGTGAGT
TGCACTTTAGAGATATTGTTGTGAAAAAGGCTGGTTGCTCTCAAGATACT
TCCTAGCTTTCGAAATCTCACTTCTAGCAATCTTGTTGTTTTCTCTTATA
CTCTTGTTTCCATTGCACTCTTTTCACTTGTTTTTTACCCTCTGTTTAGA
TGAAATAAACACATACAATATACATGATGAACATCCACAACGCAATACAT
CACTGCGATCATTGTCCAAACGAGAAAGAAAAAGTGGTAAAAGTAGAAct
agtttttttataaagtattAAAATGCTTACAAGCTTGTATAACATTGTTA
ATGTAATGCCTCAATTTGCTTTTTGTCTATGATCACTTTTTTTACAATAT
CTAGAGGCTCTCAAACGACTGAAAGAGAAGATTCAACagcaaaaaattaa
ttcaagcaCGTCAACTGTTGAAGAGGGTATGTTTTAACAAGGaacaaatt
aaaagttttaaattcaTTTAAGTCTTCATAACAAAAGTGCGAGTCTTTCT
GAAAGAAATCCTGCAATAAAGTAGCCTTGTGAATTCAGATTGAACTAGGA
AGGCAAAAACGTATTTATGGGAATGAGATTTTTGTCCATCTTAGATTGAC
ATTGTCCAACATGAATTACATTCAGATGTATTCAAAGTGACTTTGAGTGT
AACAGTGTGTAGCATCAATATTGCATTCTATTTCGTAACTTGATATAATT
TTTTGGTACCTTTTAGCTTTTCCATATAAAACTCATCACAATGAGATTGA
CATTGTCCAACATGAATTACATTCAGATGTATTCAAAGTGACTTTGAGTG
TAGCAGTGTGTAGCATCAATATTGCATTCTATTTCGTAACTTGATATAAT
TTTTTGGTACCTTTTAGCTTTTCCATATAAAACTCATCACAATGAGAATG
ATATTGTGCAGCATGAAGATGAACGAATTCCACAACAAGCAGCCATGACA
CGGAAAGTTGCTCATGCACCTACTGCTCCCACTTATACTGGTatgctttt
ttaaaaaaattctgtttcTGGCTCAAATTATGGGGAATATAGATTTAAAA
GAGGCTAAGTTAAACTGCTTCTTTCTGATTAATACTTTTAAGATCTCTCT
AAGCTTAAGGCTCCACAACAAAGTATCATGGCTTTATATTGTAGAATTTT
ATTTGACAATGATcgtgttcaaaaataaaggcctgttttgtgacattttc
aaagtgGCTGATAattatgttaataaaatgagtatttttggtgGCTAACA
GTNAGTTTTTTTGTGTAAATACCGATCATAATATAAAATTTCAACGTTag
gcgaaacaaaaaaaatttcttgattccggaaaccggccgggtgaaaaaaa
ttttttttctgacccggccgcaaacTTTCGTTCGTTAGTAGTCCGTACTT
GTTGTAATTTAGGGCATAATTTATGCTGTGNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCATA
ATTTATGCTGTGTttatacataaaagttattcttaaactctatttcaatg
agccataaattatcaaaaatagcaaaaaaaaattattttccggccacccg
cattccggaaacaaaacattttttatcattcgccttatatttgaaatatt
tcccaaggtattcaagaaatactatatttttttaaatttttgagttcact
aaatgtcacactatttttgaacatgatccaattcatttctttttaggctt
taattTACAACCAGATGCAACTTTTGTCAAATCGACAGTCAAAGTTTCCC
CACAAATGAAGAGGAAATCGAAAGCAAAAAAAGCTTCACTTGACcaagca
aaaactaataaacgtATTGCCCATGAcagaaaaaaagcaaaaggTAATAA
TAATATGGTGTATCTGTAACATGCTTTTATATTTTAATAACAGAATTTTA
CTCCTAACTTTTCCCAATCAAAGGGCAGTagaaataaatctttttttgaa
agtattaTAAGAAATTTGCTCTCGAAAATTGCAAGCCCATTAATTCAGCA
TTAAAAAAACCTTTCCTGTCACCTTTTGCTAGACATTATAAACAGTTTTC
TTAATATATTCGAGCGGGATTCTTATTTGTGATTGTAATTGCTTATAATC
CAAATTGAActttagaaatttgtttttgtttagttTCAAAGAACCAACGA
GTAGTTGCAACAAAGAAATCTACCACAAACAATATCATTACAACTTCTTC
ATGGAGGGTGGGGCAACAAATCCAAcggaaatataaaaaagaaatgacCA
TGCACAAAGAAGAGAAAAGTGAATGCAAAAGTGATTTGGCTACCACCACC
AAAACTAACCAAACATCAGACCTCAAAAGTGATAAAGGTATCAAGTAATT
GATAAAAAGAGGTTTTCGAGATCCAAACTTTCAGACATAGTGGCTCGAGT
GCTAAAATCATGACAAGTGGGTTTCTTAACCCATCACTTTCATAACTTAA
AATgtttaattcttttttatttcaaatgtgCATGCATGCACACCCAAACT
AGAAATTGTTTTATTTACTGGAGCAAGGTAAAAAACAAGGCACCACAGTT
CCTGGCACTCCTTCCTCCAGATATAGTCACTATTTTAGGCTAAAAATGAA
GAACCACTTGGGGCTACAGTAGCACTAATAGCAATCTTATctcgttttct
tttgttttagagaaCAATAATTCAACTGATAGTCATTCCAAAAAAACAAG
CTCAAACCTTCACTCAGAACTTGATAAAGATTTAATATCGGAAAAAGCAG
ATGAGAAAATATTCCCTGACCATTCAAAATCACCAGTTAGCGAAGAACAG
AAAAGTGATACAGACTCACTAAGAGGTTTGGAACAACTTCAAGATGATGT
GCTGACAAAAACAGCCAAAGATGTGATGGCAGAACTGCAACACAAAGATG
AAACTTCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040040XLOC_040040Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063857-exon-scaffold_404-1491911889:97667..97798TCONS_00063857-exon-scaffold_404-1491911889:97667..97798Clytia hemisphaericaexon
TCONS_00063857-exon-scaffold_404-1510915933:97667..97798TCONS_00063857-exon-scaffold_404-1510915933:97667..97798Clytia hemisphaericaexon
TCONS_00063857-exon-scaffold_404-1575043694:97667..97798TCONS_00063857-exon-scaffold_404-1575043694:97667..97798Clytia hemisphaericaexon
TCONS_00063857-exon-scaffold_404-1491911889:98685..98728TCONS_00063857-exon-scaffold_404-1491911889:98685..98728Clytia hemisphaericaexon
TCONS_00063857-exon-scaffold_404-1510915933:98685..98728TCONS_00063857-exon-scaffold_404-1510915933:98685..98728Clytia hemisphaericaexon
TCONS_00063857-exon-scaffold_404-1575043694:98685..98728TCONS_00063857-exon-scaffold_404-1575043694:98685..98728Clytia hemisphaericaexon
TCONS_00063857-exon-scaffold_404-1491911889:99127..99279TCONS_00063857-exon-scaffold_404-1491911889:99127..99279Clytia hemisphaericaexon
TCONS_00063857-exon-scaffold_404-1510915933:99127..99279TCONS_00063857-exon-scaffold_404-1510915933:99127..99279Clytia hemisphaericaexon
TCONS_00063857-exon-scaffold_404-1575043694:99127..99279TCONS_00063857-exon-scaffold_404-1575043694:99127..99279Clytia hemisphaericaexon
TCONS_00063857-exon-scaffold_404-1491911889:99685..99760TCONS_00063857-exon-scaffold_404-1491911889:99685..99760Clytia hemisphaericaexon
TCONS_00063857-exon-scaffold_404-1510915933:99685..99760TCONS_00063857-exon-scaffold_404-1510915933:99685..99760Clytia hemisphaericaexon
TCONS_00063857-exon-scaffold_404-1575043694:99685..99760TCONS_00063857-exon-scaffold_404-1575043694:99685..99760Clytia hemisphaericaexon
TCONS_00063857-exon-scaffold_404-1491911889:99916..100002TCONS_00063857-exon-scaffold_404-1491911889:99916..100002Clytia hemisphaericaexon
TCONS_00063857-exon-scaffold_404-1510915933:99916..100002TCONS_00063857-exon-scaffold_404-1510915933:99916..100002Clytia hemisphaericaexon
TCONS_00063857-exon-scaffold_404-1575043694:99916..100002TCONS_00063857-exon-scaffold_404-1575043694:99916..100002Clytia hemisphaericaexon
TCONS_00063857-exon-scaffold_404-1491911889:100121..100192TCONS_00063857-exon-scaffold_404-1491911889:100121..100192Clytia hemisphaericaexon
TCONS_00063857-exon-scaffold_404-1510915933:100121..100192TCONS_00063857-exon-scaffold_404-1510915933:100121..100192Clytia hemisphaericaexon
TCONS_00063857-exon-scaffold_404-1575043694:100121..100192TCONS_00063857-exon-scaffold_404-1575043694:100121..100192Clytia hemisphaericaexon
TCONS_00063857-exon-scaffold_404-1491911889:100634..100756TCONS_00063857-exon-scaffold_404-1491911889:100634..100756Clytia hemisphaericaexon
TCONS_00063857-exon-scaffold_404-1510915933:100634..100756TCONS_00063857-exon-scaffold_404-1510915933:100634..100756Clytia hemisphaericaexon
TCONS_00063857-exon-scaffold_404-1575043694:100634..100756TCONS_00063857-exon-scaffold_404-1575043694:100634..100756Clytia hemisphaericaexon
TCONS_00063857-exon-scaffold_404-1491911889:101563..101709TCONS_00063857-exon-scaffold_404-1491911889:101563..101709Clytia hemisphaericaexon
TCONS_00063857-exon-scaffold_404-1510915933:101563..101709TCONS_00063857-exon-scaffold_404-1510915933:101563..101709Clytia hemisphaericaexon
TCONS_00063857-exon-scaffold_404-1575043694:101563..101709TCONS_00063857-exon-scaffold_404-1575043694:101563..101709Clytia hemisphaericaexon
TCONS_00063857-exon-scaffold_404-1491911889:102000..102203TCONS_00063857-exon-scaffold_404-1491911889:102000..102203Clytia hemisphaericaexon
TCONS_00063857-exon-scaffold_404-1510915933:102000..102203TCONS_00063857-exon-scaffold_404-1510915933:102000..102203Clytia hemisphaericaexon
TCONS_00063857-exon-scaffold_404-1575043694:102000..102203TCONS_00063857-exon-scaffold_404-1575043694:102000..102203Clytia hemisphaericaexon
TCONS_00063857-exon-scaffold_404-1491911889:102529..102775TCONS_00063857-exon-scaffold_404-1491911889:102529..102775Clytia hemisphaericaexon
TCONS_00063857-exon-scaffold_404-1510915933:102529..102775TCONS_00063857-exon-scaffold_404-1510915933:102529..102775Clytia hemisphaericaexon
TCONS_00063857-exon-scaffold_404-1575043694:102529..102775TCONS_00063857-exon-scaffold_404-1575043694:102529..102775Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_404supercontigscaffold_404:97667..102775 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	1.50311e-06	0	0	0	0.093659	0	0	0	0	0	0	0.116013	0	0	0.288387	0.0150903	0	0	0	0	0	0.00175827	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063857 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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