TCONS_00063856 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063856
Unique NameTCONS_00063856
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length591

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063856 ID=TCONS_00063856|Name=TCONS_00063856|organism=Clytia hemisphaerica|type=transcript|length=591bp
TTAGAAATGACTCAAGATATTAGAAAAAGATACTAACAATGTCAAATTTC
AATTATAAAGCAAGACGTGTGCAAAAACCTAGTTTGAATATTGCTTCAAA
AAGTGATACCAGTTTTGGTCCCTCTCTATCAGCACTGAATGATGCATGGT
CTTCTATTGCAGCTACAAAGAAAGAGATTAATCAAGTAAACCATAGAATA
AggcaagtatcaagccctattGGTTTTTACCATGATGATGAGGCAGATGA
ATGCTTACCGCCACCTCCACCCAAGAATAAGAACAATCCAAACATTGAAC
GAAGGACTATTTATCAAATGCTTGAACAGACCAAAACACGCAAAGAAAAC
ATTCCTCCTCCAAGCTATCCACAACCAAACCTCCATAGAATTCCACCAAG
CGTGGATGAAATAAACACATACAATATACATGATGAACATCCACAACGCA
ATACATCACTGCGATCATTGTCCAAACGAGAAAGAAAAAGTGAGGCTCTC
AAACGACTGAAAGAGAAGATTCAACagcaaaaaattaattcaagcaCGTC
AACTGTTGAAGAGGCTTTTCCATATAAAACTCATCACAATG
Run BLAST on NCBI

transcript from alignment at scaffold_404:97667..100509+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063856 ID=TCONS_00063856|Name=TCONS_00063856|organism=Clytia hemisphaerica|type=transcript|length=2843bp|location=Sequence derived from alignment at scaffold_404:97667..100509+ (Clytia hemisphaerica)
TTAGAAATGACTCAAGATATTAGAAAAAGATACTAACAATGTCAAATTTC
AATTATAAAGCAAGACGTGTGCAAAAACCTAGTTTGAATATTGCTTCAAA
AAGTGATACCAGTTTTGGTCCCTCTCTATCAGGTATTTGAGTGTATATAC
TCTAATGTTTTTTATCTTGAAACAAGTCAAACTTTTACCCTACACACACA
CCACACCATTTTTCCTGAATTTCTTTTTCTGACCCTTGATGTGTTTCTTT
TCCTATGTTTTCTGTTCTTTATTCTCTAGATtatttagcctggatatcca
agctcgaaattttagaaaaaactaaatttacctcaatatacaaagttcta
aaattatagagcttggtctccccaGAAAATGAAAGtacaaacccatgttt
ccaaaactttccctgccaacccagggcagcaaaacagaaattaataaaaa
gcaacCTTGCAAGATCTAAACCATTTTTAAAACATCCAAAGATTACACCA
AAGTCCATAAACAAGTttgcatgcattatcatgaccaaccatgttttctt
ggaaaatgaacttgcctctgttttcttctttttcatgttttcatgtaaca
gaaagctctatcttcgCTAGCAAGTAGAGGGTTACcatatttttgtttca
gaattGCTCTGCGTCATGTAGATCGGTCCTGAGAATGCAAAACGCTCTat
ggagaccaggctgtaaaccagaacataaaacattaaaaactagactgtga
aatagtttacagcctggatatccaggctatagaTTATTGAGCTGATTTAC
ATACACTCAAAATCTATTTTGGCTCAGATTGCTCTTAATTCAGTCTtaga
ttttggccaaaatttgagtcaggtgttcttataaaaaaatttttttgttg
agaATACTATCAAATCACTTACGCAAACACATTTCTAATAGTAAAACATT
CAGAATTAATTTATAAAGGTTAGTATTCTAATTAAGACTGTCActctttt
ttttaccttttgttTTAGCACTGAATGATGCATGGTCTTCTATTGCAGCT
ACAAAGAAAGAGGTTGGTATTTTTAACATCGATCAATTCTTCATTCTGGA
GTTttaatatttagaaagtagacaTTCTAATTTAAGATTTGAAAATGACT
TTTTGATTGATAGTTATAAGGTTTTTttattcacttttcgaaaagtgaaa
agttaaaaaaaaaacgcaaTAAAAAATAATCTACAAATTAATCTATAAGG
CCCCTACAACTTTATTTTTTAGACTTAAGAAGAAAAATTGCCCTACTGTA
ATTTTTTCCTGGGTAATAATGGTATCAATATTTTCAATCNcttaagaaga
aaaattaccctACTGTAATTTTTTCCTGGGTAATAATGGTATATAATCAA
TATTATAACACATGGCAATGCACTTCTTATCATATTATATCATTCCTTTT
AAAATTATAGATTAATCAAGTAAACCATAGAATAAggcaagtatcaagcc
ctattGGTTTTTACCATGATGATGAGGCAGATGAATGCTTACCGCCACCT
CCACCCAAGAATAAGAACAATCCAAACATTGAACGAAGGACTATTTATCA
AATGCTTGAACAGGTGACAACTCAAATTCTGTTATTGACACAATATTCTC
CTTTCCAAGCGCCTTTTAATGTTTATAATGTAAGAATTTCACTAGAAATT
GACTACTGATACTCTGCAAACAGTCACTCTAAAGGCCATGGCTCTGTAAG
AGAATCTGCCCTGATTGGCTCActgatttgatatttttcatcaaagtttg
gAATGAATTTTAAATGAGCTTTAATTAATCACAATGATTGGCTAAAATGC
AACACTCGCACCAAAATCTAGTACCAATTAAAGCAAACTTTAGAACCAAG
TtgctttcatttttgttttgactgaACAAGCAGGTCAGATTATCCCTTTA
GAACGGATTGTGATATGCACAGAATGGATAGTCTGTTATAAGATTAGACA
TGTTTCTATCTTCTCTAGACCAAAACACGCAAAGAAAACATTCCTCCTCC
AAGCTATCCACAACCAAACCTCCATAGAATTCCACCAAGCGTGGGTGAGT
TGCACTTTAGAGATATTGTTGTGAAAAAGGCTGGTTGCTCTCAAGATACT
TCCTAGCTTTCGAAATCTCACTTCTAGCAATCTTGTTGTTTTCTCTTATA
CTCTTGTTTCCATTGCACTCTTTTCACTTGTTTTTTACCCTCTGTTTAGA
TGAAATAAACACATACAATATACATGATGAACATCCACAACGCAATACAT
CACTGCGATCATTGTCCAAACGAGAAAGAAAAAGTGGTAAAAGTAGAAct
agtttttttataaagtattAAAATGCTTACAAGCTTGTATAACATTGTTA
ATGTAATGCCTCAATTTGCTTTTTGTCTATGATCACTTTTTTTACAATAT
CTAGAGGCTCTCAAACGACTGAAAGAGAAGATTCAACagcaaaaaattaa
ttcaagcaCGTCAACTGTTGAAGAGGGTATGTTTTAACAAGGaacaaatt
aaaagttttaaattcaTTTAAGTCTTCATAACAAAAGTGCGAGTCTTTCT
GAAAGAAATCCTGCAATAAAGTAGCCTTGTGAATTCAGATTGAACTAGGA
AGGCAAAAACGTATTTATGGGAATGAGATTTTTGTCCATCTTAGATTGAC
ATTGTCCAACATGAATTACATTCAGATGTATTCAAAGTGACTTTGAGTGT
AACAGTGTGTAGCATCAATATTGCATTCTATTTCGTAACTTGATATAATT
TTTTGGTACCTTTTAGCTTTTCCATATAAAACTCATCACAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040040XLOC_040040Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063856-exon-scaffold_404-1491911889:97667..97798TCONS_00063856-exon-scaffold_404-1491911889:97667..97798Clytia hemisphaericaexon
TCONS_00063856-exon-scaffold_404-1510915933:97667..97798TCONS_00063856-exon-scaffold_404-1510915933:97667..97798Clytia hemisphaericaexon
TCONS_00063856-exon-scaffold_404-1575043694:97667..97798TCONS_00063856-exon-scaffold_404-1575043694:97667..97798Clytia hemisphaericaexon
TCONS_00063856-exon-scaffold_404-1491911889:98685..98728TCONS_00063856-exon-scaffold_404-1491911889:98685..98728Clytia hemisphaericaexon
TCONS_00063856-exon-scaffold_404-1510915933:98685..98728TCONS_00063856-exon-scaffold_404-1510915933:98685..98728Clytia hemisphaericaexon
TCONS_00063856-exon-scaffold_404-1575043694:98685..98728TCONS_00063856-exon-scaffold_404-1575043694:98685..98728Clytia hemisphaericaexon
TCONS_00063856-exon-scaffold_404-1491911889:99127..99279TCONS_00063856-exon-scaffold_404-1491911889:99127..99279Clytia hemisphaericaexon
TCONS_00063856-exon-scaffold_404-1510915933:99127..99279TCONS_00063856-exon-scaffold_404-1510915933:99127..99279Clytia hemisphaericaexon
TCONS_00063856-exon-scaffold_404-1575043694:99127..99279TCONS_00063856-exon-scaffold_404-1575043694:99127..99279Clytia hemisphaericaexon
TCONS_00063856-exon-scaffold_404-1491911889:99685..99760TCONS_00063856-exon-scaffold_404-1491911889:99685..99760Clytia hemisphaericaexon
TCONS_00063856-exon-scaffold_404-1510915933:99685..99760TCONS_00063856-exon-scaffold_404-1510915933:99685..99760Clytia hemisphaericaexon
TCONS_00063856-exon-scaffold_404-1575043694:99685..99760TCONS_00063856-exon-scaffold_404-1575043694:99685..99760Clytia hemisphaericaexon
TCONS_00063856-exon-scaffold_404-1491911889:99916..100002TCONS_00063856-exon-scaffold_404-1491911889:99916..100002Clytia hemisphaericaexon
TCONS_00063856-exon-scaffold_404-1510915933:99916..100002TCONS_00063856-exon-scaffold_404-1510915933:99916..100002Clytia hemisphaericaexon
TCONS_00063856-exon-scaffold_404-1575043694:99916..100002TCONS_00063856-exon-scaffold_404-1575043694:99916..100002Clytia hemisphaericaexon
TCONS_00063856-exon-scaffold_404-1491911889:100121..100192TCONS_00063856-exon-scaffold_404-1491911889:100121..100192Clytia hemisphaericaexon
TCONS_00063856-exon-scaffold_404-1510915933:100121..100192TCONS_00063856-exon-scaffold_404-1510915933:100121..100192Clytia hemisphaericaexon
TCONS_00063856-exon-scaffold_404-1575043694:100121..100192TCONS_00063856-exon-scaffold_404-1575043694:100121..100192Clytia hemisphaericaexon
TCONS_00063856-exon-scaffold_404-1491911889:100483..100509TCONS_00063856-exon-scaffold_404-1491911889:100483..100509Clytia hemisphaericaexon
TCONS_00063856-exon-scaffold_404-1510915933:100483..100509TCONS_00063856-exon-scaffold_404-1510915933:100483..100509Clytia hemisphaericaexon
TCONS_00063856-exon-scaffold_404-1575043694:100483..100509TCONS_00063856-exon-scaffold_404-1575043694:100483..100509Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_404supercontigscaffold_404:97667..100509 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.54362	0	0	0.832588	0.000273768	0.69324	0	0.950971	0.404971	0.511721	0.231111	0.471123	0	0	0	0	0.637862	0	0	0.86487	0	0.119537	0	0.00141182	0	0.395263	0	0	0	0.27925
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063856 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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