TCONS_00063853 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063853
Unique NameTCONS_00063853
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length826

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063853 ID=TCONS_00063853|Name=TCONS_00063853|organism=Clytia hemisphaerica|type=transcript|length=826bp
gtatatcatgaatagttTGTACTATGACAACTCAAAATTCAATACGTCAC
GGAAGCTATTCAAGTTTACGGCGAATAAGGGTAATAAGCCGGTTTTACGA
CGAGGAGATGAATTTTGAGGGTGTTTCGAAAAAATTTGGTACTGCAAGTG
TCTACCTTACTCATTCTTTAAATGTTAAGTTAAAATGAAATCATAAGCTA
TAcatgttggacggtgaaaaagaatgcggctattatattctTAAGCTATA
CAGATAGCTGAAACTAAATTTCTGATACTGAGTTTTCATTCAAACGAACC
AGATTTGAGCAATGGTTTAGTGGATTCATTGAAACAAATCATACCTATGT
TTATGCGATATTTCTGAGTAGGAGCCTCGTTAAGCGGGCTTGTAGCAGGC
TTGGGGTAGAAGACATGTAAAAGGCCCCCCAAGCGCTTTTCGTGATTCGT
GATTCTTATCTTTCTTAGCATgttgggctgaccttccagcgcagctgatt
tatttagcttcaaagcAGAACGATATGGAAATGCGAGAGCtattcttttc
aatatattttctcaTAATTTTTTCTCCTAATTACGTCATAAATTGTTGGT
TATTGCTGACAGTTAGTATGAAAAAATCTATATGCTTTTAAGAccacaat
tttatttcaaagaaatcccATGATACTCGCGGTAAATAAAGGCACAGTCT
GGTAGTAGCCATTCTATGCATGTCAgactttttttctattgttcagGTCC
GGCGAATGGCGACATCGATCGAGAAATACCGTGATACAAAATTAGCCAAC
TTCATCAATATGCAACCAGCTTCCTG
Run BLAST on NCBI

transcript from alignment at scaffold_404:43236..44061+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063853 ID=TCONS_00063853|Name=TCONS_00063853|organism=Clytia hemisphaerica|type=transcript|length=826bp|location=Sequence derived from alignment at scaffold_404:43236..44061+ (Clytia hemisphaerica)
gtatatcatgaatagttTGTACTATGACAACTCAAAATTCAATACGTCAC
GGAAGCTATTCAAGTTTACGGCGAATAAGGGTAATAAGCCGGTTTTACGA
CGAGGAGATGAATTTTGAGGGTGTTTCGAAAAAATTTGGTACTGCAAGTG
TCTACCTTACTCATTCTTTAAATGTTAAGTTAAAATGAAATCATAAGCTA
TAcatgttggacggtgaaaaagaatgcggctattatattctTAAGCTATA
CAGATAGCTGAAACTAAATTTCTGATACTGAGTTTTCATTCAAACGAACC
AGATTTGAGCAATGGTTTAGTGGATTCATTGAAACAAATCATACCTATGT
TTATGCGATATTTCTGAGTAGGAGCCTCGTTAAGCGGGCTTGTAGCAGGC
TTGGGGTAGAAGACATGTAAAAGGCCCCCCAAGCGCTTTTCGTGATTCGT
GATTCTTATCTTTCTTAGCATgttgggctgaccttccagcgcagctgatt
tatttagcttcaaagcAGAACGATATGGAAATGCGAGAGCtattcttttc
aatatattttctcaTAATTTTTTCTCCTAATTACGTCATAAATTGTTGGT
TATTGCTGACAGTTAGTATGAAAAAATCTATATGCTTTTAAGAccacaat
tttatttcaaagaaatcccATGATACTCGCGGTAAATAAAGGCACAGTCT
GGTAGTAGCCATTCTATGCATGTCAgactttttttctattgttcagGTCC
GGCGAATGGCGACATCGATCGAGAAATACCGTGATACAAAATTAGCCAAC
TTCATCAATATGCAACCAGCTTCCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040037XLOC_040037Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063853-exon-scaffold_404-1491911889:43236..44061TCONS_00063853-exon-scaffold_404-1491911889:43236..44061Clytia hemisphaericaexon
TCONS_00063853-exon-scaffold_404-1510915933:43236..44061TCONS_00063853-exon-scaffold_404-1510915933:43236..44061Clytia hemisphaericaexon
TCONS_00063853-exon-scaffold_404-1575043694:43236..44061TCONS_00063853-exon-scaffold_404-1575043694:43236..44061Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_404supercontigscaffold_404:43236..44061 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.24746	0.239082	0.404284	0.887555	0.240921	0	0.075787	0.213479	0	0.0606636	0	0.0782146	0.232221	0.281503	0.165437	0.0709925	0.131351	0.134804	0.93682	0.831507	1.58995	1.20473	0.272535	0.247638	0.125634	0.507028	0	0.0903283	0.134772	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063853 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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