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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063851 ID=TCONS_00063851|Name=TCONS_00063851|organism=Clytia hemisphaerica|type=transcript|length=997bpRun BLAST on NCBI transcript from alignment at scaffold_404:18207..45950+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00063851 ID=TCONS_00063851|Name=TCONS_00063851|organism=Clytia hemisphaerica|type=transcript|length=27744bp|location=Sequence derived from alignment at scaffold_404:18207..45950+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00063851 vs. Swiss-Prot (Human)
Match: TF2H1 (General transcription factor IIH subunit 1 OS=Homo sapiens GN=GTF2H1 PE=1 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 1.646e-31 Identity = 88/303 (29.04%), Postives = 151/303 (49.83%), Query Frame = 2
Query: 2 AKKDEEAQLKELRESFFDPLINFTSASPNS-QEGYG-----SGFRQKTIGE----SLLKQFNNQSLLVLQNTLKRK--TNDELS-----------------TVKQKRIRDALELEDLESKEQQATTSLNILDTDKFSHKGPDDEDXXXXXXXXXXXXXXMESFKHNVLTWVPNLPKAMTLDECRRMAVDLSPGGRLIQNHSSKSYSENVSKDMVQETKKNYMAVAELLRHFWCCFPIKSPQLEEKVRRMATSIEKYRDTKLANF---INMQPASCDQLGTHLARMIEEALKKFRTWEEKRTAK 814
AK DE+ + +PL++ T+ EGYG S K+I E +++K+FN+ S +VL L+++ N++ S VK+ ++++++E EDL T +LN+ +D++ H GP + + +S + + + P L + ++ LSPGG L+Q + ++ ++ V D+ E K Y+AV ELLRHFW CFP+ +P LEEKV +M +++E+++ TKL F I Q S + L +H+ M++ A K TW+ +R K
Sbjct: 247 AKIDEKGLKTMVSLGVKNPLLDLTALEDKPLDEGYGISSVPSASNSKSIKENSNAAIIKRFNHHSAMVLAAGLRKQEAQNEQTSEPSNMDGNSGDADCFQPAVKRAKLQESIEYEDLGKNNSVKTIALNLKKSDRYYH-GPT-PIQSLQYATSQDIINSFQSIRQEMEAYTPKLTQVLSSSAASSTITALSPGGALMQGGTQQAINQMVPNDIQSELKHLYVAVGELLRHFWSCFPVNTPFLEEKVVKMKSNLERFQVTKLCPFQEKIRRQYLSTN-LVSHIEEMLQTAYNKLHTWQSRRLMK 546 The following BLAST results are available for this feature:
BLAST of TCONS_00063851 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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