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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063847 ID=TCONS_00063847|Name=TCONS_00063847|organism=Clytia hemisphaerica|type=transcript|length=2398bp
ATATATACTTTAAAACCTTTCAgttttgacaggttttgaacTATTTTTAC
TCTCATAACCAGATAAAGTCTTACTTTAAAAATGGACAAGCTACCTTTAA
AACATGTTGTTACCGTAAATGAGAGGGGTAGCGCCATCAGAGCTGTGCGT
TTTAATTTTGATGGTGAGTATTGTATGACATGTGGAAGTGACAAATCTGT
TAAATTATGGAATCCCTATAAAAACATTCTATTGAAGACATACTCTGGAC
ATGGCTATGAAGTTTTGGATTGTGCTTCTTCGACTGATAATAGTAGACTG
GCTAGTTGTAGTGCAGATAAAACAGTTGTTCTCTGGGATGTTGCAACTGG
TCAAGTTGTTAGGAAGTACAGAGGTCATCTTGGTAGGGTGAATTGTGTCA
AATTCAATTCTCCTGACAGTAGTGTCATTTTGTCTGGATCATATGATGCT
ACTGTACGTTGTTGGGATTGCAGATCAAGGAGTCTGGAACCCATTCAAAT
TATTGATGACGCTAAGGACAGTATATCCTCATTGCAAGTtacagaaaatg
aaattttaacagGttcaGTGGATTGTTATTCAAGGATCTATGATATCCGT
AAAGGACAACTAAGAGAGGATTGTATGGGAGAATCAATCACTTCGATATC
TATAACAAATGATGGACAATGTATACTGGCATCTTTGCTAGCCAGCTCAA
TTAAATTGATTGATAAAGATAATGGATCAGTATTAAATTCATTTGAAGGA
CATGTAAATAAAGAGTATAAAGTTGAcagttgtgtttcaagcaatgATAC
CCATGTTATGAGCGGCTCTGAGGATGGTTGTATTTACTTTTGGGATCTGA
TTGAAGCAAAAGTTGTTACGAAAACAGTTGATGCACATAAAGGTGTTGTG
TACTCTATGTCAAAACACCCTGAAAAGAATAGTATTTTGACTGCTGCAAC
AGATGGAGTCAAATTATGGACATGTAATGAAGATGAAGTTAACGACGATG
AACAGCAAGGCATAAAATCAACCTGATTAGTTGACTATTTATGCCCAAAT
AATTTCTTAATCTTCACCTTTATACACTTTTATCTGATAATACATTATTT
ATTTTCTCTTGATATTGCACACTAGGAAACCAAATAGGTTACAGTTTCTA
GTTCAATAGATAAAATATTGTAATTCTCACATTTTTGTCACTTATCCTGA
TCTAGTCATGTTGATATAACACAACGCTGAATTATTGTAATGTATGCACA
CCTTGTGTTTTTCAGATGAAATATTGTGAAAGATGATAAACAAAcgataa
taaaaaatcaaaatgagtGAAAGCACAGATTGTTATGCTGATGTGGAAAA
AGGGTTGAAGAAAACTATCAACATTATTCTCTCTGAAGAAACTGAAGATA
AGTCCAAAGAGAAAAATAACAATTTACAACATGCTGTAGAAGATTTTGAA
CAATCTatacaaaaattgcaaaacttTTTCACAGAGTCTCTCTTGACGTT
CAATTATTTGAATCCAGCAAAGAAGGAGGAAGATGAGATACAACAAATGA
AAGAAGAACTTGCTCGTAAAGATACTTTGATTAAAGATCAGATGAAAAAG
CTTTCGAGATACAGGATTGAACTTGAAGTCATTCAAGAATTACAAATGCA
AGCTCGTACTAAAACattataaaaattaatttctttgatCCATGACAAAA
ACATTTATGCTGTAAATCAACTTGGATTATCTTGAATTCAAAATGAACTT
TAACACAGAGCATTTAATATCACCTTATCTTGGCTGGTAAGTCACGTGCA
TCTCCTGTGATCCAAAATCGTGATGTATAGTACCATTTACTTGGTAAATG
ATACCAAGCTATGTCTATGCTATTTGGAGCTGGAAAAAATGTATTCTTGT
TGGAACGAGTATATCAAATTTCTATTGCTTTACTACAGTTTAATTTTGAA
GCATTAGAGCTTTGTCATCATTTAACAGTAAACAATTTTGTGGTGGTTAC
ACTATATTCGCTTCGATATAACAAGATTGATATACACTGTTTTCAGTGGT
CCCTATAGTGCCCTCAATTTGTATAATTTCTTTATCTAAAAGTTTGAGTT
TTCCCAACTCATCCACTCATGGCGCAGTACTCATTGCGCTTTTCTACAGA
TAAGTAGGTTTTATTTCGTAGAATTTTTAGTAGGATAGAGTGAAGTCCCC
AAATGTACTAAATGCTGAAAATCCTCTAGAAATTATGGGAAGGGAAGTAG
CTACAGTGAGAAATGTGAGGAATATACGAGTACTGAATAactgaatattt
aaaaaaatttaatagcttaaaatttgaataactcagccaaaaaaaaagga
ttttttattcGATCACTTTTTATTCATCGTATGCATCTTCtgtaaaaa Run BLAST on NCBI transcript from alignment at scaffold_404:9281..13190+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063847 ID=TCONS_00063847|Name=TCONS_00063847|organism=Clytia hemisphaerica|type=transcript|length=3910bp|location=Sequence derived from alignment at scaffold_404:9281..13190+ (Clytia hemisphaerica)
ATATATACTTTAAAACCTTTCAgttttgacaggttttgaacTATTTTTAC
TCTCATAACCAGATAAAGTCTTACTTTAAAAATGGACAAGCTACCTTTAA
AACATGTTGTTACCGTAAATGAGAGGGGTAGCGCCATCAGAGCTGTGCGT
TTTAATTTTGATGGTGAGTATTGTATGACATGTGGAAGTGACAAATCTGT
TAAATTATGGAATCCCTATAAAAACATTCTATTGAAGACATACTCTGGAC
ATGGCTATGAAGTTTTGGATTGTGCTTCTTCGACTGATAATAGTAGACTG
GCTAGTTGTAGTGCAGATAAAACAGTTGTTCTCTGGGATGTTGCAACTGG
TCAAGTTGTTAGGAAGTACAGAGGTCATCTTGGTGTATGTATGCTTTTAT
TTAAGTTTTCGTTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NTTTTCGACCCAAATCAGCAAAACCCCCCCTCactattctgggggggggg
tgcacactatgttTGCTATTACTTTATGCAAATCCATTAATTTATTGAAA
GAATGAATCTTTCTTTTGGATTgttttttttacagtatactgtttgaaaa
aatcttactATTTACACTTtggtacatttttatttttatcacatTTTTCA
GTCATATTATATTGCAATTCTAATATTTCCCTGTCTTACTTTTAGAGGGT
GAATTGTGTCAAATTCAATTCTCCTGACAGTAGTGTCATTTTGTCTGGAT
CATATGATGCTACTGTACGTTGTTGGGATTGCAGATCAAGGAGTCTGGAA
CCCATTCAAATTATTGATGACGCTAAGGACAGTATATCCTCATTGCAAGT
tacagaaaatgaaattttaacagGGTATGTATAAATCTAGTAAAATTATT
TATCATGAATTAAGACTAAGTATTTTATAGGTTTATTCTTTGTTTGgtca
aattatttatttttggcTGATGAAGTTTatgaagattttttgtttttgaa
attgagGGTGGATTCCTTTTAACTTATGttcatttaattattttcaacta
ttttgttcatttattttcattttagttcaGTGGATTGTTATTCAAGGATC
TATGATATCCGTAAAGGACAACTAAGAGAGGATTGTATGGGAGAATCAAT
CACTTCGATATCTATAACAAATGATGGACAATGTATACTGGCATCTTTGC
TAGCCAGCTCAATTAAATTGATTGATAAAGATAATGGATCAGTATTAAAT
TCATTTGAAGGACATGTAAATAAAGAGTATAAAGTTGAcagttgtgtttc
aagcaatgATACCCATGTTATGAGCGGCTCTGAGGATGGTTGTATTTACT
TTTGGGATCTGATTGAAGCAAAAGTTGTTACGAAAACAGTTGATGCACAT
AAAGGTGTTGTGTACTCTATGTCAAAACACCCTGAAAAGAATAGTATTTT
GACTGCTGCAACAGATGGAGTCAAATTATGGACATGTAATGAAGATGAAG
TTAACGACGATGAACAGCAAGGCATAAAATCAACCTGATTAGTTGACTAT
TTATGCCCAAATAATTTCTTAATCTTCACCTTTATACACTTTTATCTGAT
AATACATTATTTATTTTCTCTTGATATTGCACACTAGGAAACCAAATAGG
TTACAGTTTCTAGTTCAATAGATAAAATATTGTAATTCTCACATTTTTGT
CACTTATCCTGATCTAGTCATGTTGATATAACACAACGCTGAATTATTGT
AATGTATGCACACCTTGTGTTTTTCAGATGAAATATTGTGAAAGATGATA
AACAAAcgataataaaaaatcaaaatgagtGAAAGCACAGATTGTTATGC
TGATGTGGAAAAAGGGTTGAAGAAAACTATCAACATTATTCTCTCTGAAG
AAACTGAAGATAAGTCCAAAGAGAAAAATAACAATTTACAACATGCTGTA
GAAGATTTTGAACAATCTatacaaaaattgcaaaacttTTTCACAGAGTC
TCTCTTGACGTTCAATTATTTGAATCCAGCAAAGAAGGAGGAAGATGAGA
TACAACAAATGAAAGAAGAACTTGCTCGTAAAGATACTTTGATTAAAGAT
CAGATGAAAAAGCTTTCGAGATACAGGATTGAACTTGAAGTCATTCAAGA
ATTACAAATGCAAGCTCGTACTAAAACattataaaaattaatttctttga
tCCATGACAAAAACATTTATGCTGTAAATCAACTTGGATTATCTTGAATT
CAAAATGAACTTTAACACAGAGCATTTAATATCACCTTATCTTGGCTGGT
AAGTCACGTGCATCTCCTGTGATCCAAAATCGTGATGTATAGTACCATTT
ACTTGGTAAATGATACCAAGCTATGTCTATGCTATTTGGAGCTGGAAAAA
ATGTATTCTTGTTGGAACGAGTATATCAAATTTCTATTGCTTTACTACAG
TTTAATTTTGAAGCATTAGAGCTTTGTCATCATTTAACAGTAAACAATTT
TGTGGTGGTTACACTATATTCGCTTCGATATAACAAGATTGATATACACT
GTTTTCAGTGGTCCCTATAGTGCCCTCAATTTGTATAATTTCTTTATCTA
AAAGTTTGAGTTTTCCCAACTCATCCACTCATGGCGCAGTACTCATTGCG
CTTTTCTACAGATAAGTAGGTTTTATTTCGTAGAATTTTTAGTAGGATAG
AGTGAAGTCCCCAAATGTACTAAATGCTGAAAATCCTCTAGAAATTATGG
GAAGGGAAGTAGCTACAGTGAGAAATGTGAGGAATATACGAGTACTGAAT
Aactgaatatttaaaaaaatttaatagcttaaaatttgaataactcagcc
aaaaaaaaaggattttttattcGATCACTTTTTATTCATCGTATGCATCT
TCtgtaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063847-exon-scaffold_404-1491911889:9281..9664 | TCONS_00063847-exon-scaffold_404-1491911889:9281..9664 | Clytia hemisphaerica | exon |
| TCONS_00063847-exon-scaffold_404-1510915933:9281..9664 | TCONS_00063847-exon-scaffold_404-1510915933:9281..9664 | Clytia hemisphaerica | exon |
| TCONS_00063847-exon-scaffold_404-1575043694:9281..9664 | TCONS_00063847-exon-scaffold_404-1575043694:9281..9664 | Clytia hemisphaerica | exon |
| TCONS_00063847-exon-scaffold_404-1491911889:10976..11154 | TCONS_00063847-exon-scaffold_404-1491911889:10976..11154 | Clytia hemisphaerica | exon |
| TCONS_00063847-exon-scaffold_404-1510915933:10976..11154 | TCONS_00063847-exon-scaffold_404-1510915933:10976..11154 | Clytia hemisphaerica | exon |
| TCONS_00063847-exon-scaffold_404-1575043694:10976..11154 | TCONS_00063847-exon-scaffold_404-1575043694:10976..11154 | Clytia hemisphaerica | exon |
| TCONS_00063847-exon-scaffold_404-1491911889:11356..13190 | TCONS_00063847-exon-scaffold_404-1491911889:11356..13190 | Clytia hemisphaerica | exon |
| TCONS_00063847-exon-scaffold_404-1510915933:11356..13190 | TCONS_00063847-exon-scaffold_404-1510915933:11356..13190 | Clytia hemisphaerica | exon |
| TCONS_00063847-exon-scaffold_404-1575043694:11356..13190 | TCONS_00063847-exon-scaffold_404-1575043694:11356..13190 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_404 | supercontig | scaffold_404:9281..13190 + |
Blast
BLAST of TCONS_00063847 vs. Swiss-Prot (Human)
Match: WDR83 (WD repeat domain-containing protein 83 OS=Homo sapiens GN=WDR83 PE=1 SV=1) HSP 1 Score: 323.553 bits (828), Expect = 5.790e-103 Identity = 162/306 (52.94%), Postives = 217/306 (70.92%), Query Frame = 1
Query: 79 KMDKLPLKHVVTVNERGSAIRAVRFNFDGEYCMTCGSDKSVKLWNPYKNILLKTYSGHGYEVLDCASSTDNSRLASCSADKTVVLWDVATGQVVRKYRGHLGRVNCVKFNSPDSSVILSGSYDATVRCWDCRSRSLEPIQIIDDAKDSISSLQVTENEILTGSVDCYSRIYDIRKGQLREDCMGESITSISITNDGQCXXXXXXXXXXXXXDKDNGSVLNSFEGHVNKEYKVDSCVSSNDTHVMSGSEDGCIYFWDLIEAKVVTKTVDAHKGVVYSMSKHPEKNSILTAATDGVKLWTCNEDEVND 996
+ +LP K + T++ A+RAVRFN DG YC+TCGSDK++KLWNP + LL+TYSGHGYEVLD A S DNS L S DK VVLWDVA+GQVVRK+RGH G+VN V+FN +++VILSGS D+++RCWDCRSR EP+Q +D+A+D +SS++V+++EIL GSVD R YD+R GQL D +G IT + DGQC L S L S+++L+DKD G +L ++GH N+EYK+D C+S DTHV+S SEDG ++FWDL+E + + GVV S++ HP + +LTA V+ W E D
Sbjct: 9 RPPELPQKRLKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNE-EATVILSGSIDSSIRCWDCRSRRPEPVQTLDEARDGVSSVKVSDHEILAGSVDGRVRRYDLRMGQLFSDYVGSPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYKGHKNQEYKLDCCLSERDTHVVSCSEDGKVFFWDLVEGALAL-ALPVGSGVVQSLAYHPTEPCLLTAMGGSVQCWREEAYEAED 312
The following BLAST results are available for this feature:
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