TCONS_00063842 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063842
Unique NameTCONS_00063842
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length619

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063842 ID=TCONS_00063842|Name=TCONS_00063842|organism=Clytia hemisphaerica|type=transcript|length=619bp
TAATGTCCACATTACTAACAAAGTGTTGTACGGCAAGCTGAACCGATTCA
GCAGTCTTATCCAGAAAAGAAGATTCCAGTTAGCAGGTCACGTCATCAGA
GGAAATGAGCCGGCATCTAAACTTCTTCTTTGGCAGCCAACATTCTTAAC
AAAGAAGAGAGGTCGTCCACACAAGACACTACTCAAAGTCTTAGAACAAG
ACACTGGACTTGACAAAGGCGAGATGGTTCGTTTGGCGCACAACATGGTC
AGATGGAAAGACATGGTCATATCATCACTTTCAAGTGGATGATTTATGTA
TGTAATGTATGTATTTTGCATCACTAtgcaaaaattcaaataaaaataat
gggccaatcccgagaaaagctgacGAACGGACTAACGAACAAAAGTTAAA
TTagaggacctccgaggtaggtccaaaaaccaaGTTTCTACTATGTCAaa
ctgtgacctactttcagcaTAGAtggtaaattatttttctccAGGGAGAA
GGCAAAATTGGTGTACGTTGACGTACCTTCTTAGGCTCTGAAGTTATCTG
ACTGGTTCTCAAATTTACTAAtatgtatctgacagggtcaactTTTCGAA
CTCTAGCGATATGTCCCCG
Run BLAST on NCBI

transcript from alignment at scaffold_403:85431..86049

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063842 ID=TCONS_00063842|Name=TCONS_00063842|organism=Clytia hemisphaerica|type=transcript|length=619bp|location=Sequence derived from alignment at scaffold_403:85431..86049 (Clytia hemisphaerica)
CGGGGACATATCGCTAGAGTTCGAAAagttgaccctgtcagatacataTT
AGTAAATTTGAGAACCAGTCAGATAACTTCAGAGCCTAAGAAGGTACGTC
AACGTACACCAATTTTGCCTTCTCCCTggagaaaaataatttaccaTCTA
tgctgaaagtaggtcacagttTGACATAGTAGAAACttggtttttggacc
tacctcggaggtcctctAATTTAACTTTTGTTCGTTAGTCCGTTCgtcag
cttttctcgggattggcccattatttttatttgaatttttgcaTAGTGAT
GCAAAATACATACATTACATACATAAATCATCCACTTGAAAGTGATGATA
TGACCATGTCTTTCCATCTGACCATGTTGTGCGCCAAACGAACCATCTCG
CCTTTGTCAAGTCCAGTGTCTTGTTCTAAGACTTTGAGTAGTGTCTTGTG
TGGACGACCTCTCTTCTTTGTTAAGAATGTTGGCTGCCAAAGAAGAAGTT
TAGATGCCGGCTCATTTCCTCTGATGACGTGACCTGCTAACTGGAATCTT
CTTTTCTGGATAAGACTGCTGAATCGGTTCAGCTTGCCGTACAACACTTT
GTTAGTAATGTGGACATTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040032XLOC_040032Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063842-exon-scaffold_403-1491911889:85431..86049TCONS_00063842-exon-scaffold_403-1491911889:85431..86049Clytia hemisphaericaexon
TCONS_00063842-exon-scaffold_403-1510915933:85431..86049TCONS_00063842-exon-scaffold_403-1510915933:85431..86049Clytia hemisphaericaexon
TCONS_00063842-exon-scaffold_403-1575043694:85431..86049TCONS_00063842-exon-scaffold_403-1575043694:85431..86049Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_403supercontigscaffold_403:85431..86049 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.116535	0.276266	0.843855	0.596105	0.233384	0.276635	0.444997	0.10415	0.159683	0.105246	0.0876676	0.161625	0.309013	0.601614	0.058195	0.158189	0.0649586	0	0.183969	0	0.0836632	0.122424	0	0.210572	0.278714	0.248745	0.118651	0	0.192086	0.256462
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063842 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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