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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063841 ID=TCONS_00063841|Name=TCONS_00063841|organism=Clytia hemisphaerica|type=transcript|length=1179bp
AACCGTACTAAATATAATTTCAAAGGAATCCTCCATGGCTAAGATTGATC
TGAAGGATGCTTATTATAGTGTAAAAATTCATGAGAAAGTATTTAAAATT
GgaatttgaaaatcaactttATCAGTTTACTGTTTATAGTTGCTTTCCTA
ACGGCAATCGAAacgaaaatctacaaaataatGAAAGTGCCAACATGAAA
CCTTAGATCAGCTGGTATCCCAGTGTGCAGATACATTGATGACTTCTTTC
TCACAAaactatttatttattatttatttattaaaggattGAGGTTTAAG
GCGCGCCGTGGGCCTCTAAGAATCTAATCTTTTTTTACAAATGCTTGTTG
TTATAATTTTCTTTAGGTATAGTTTTGTTCTGGGGCTTCCCCTGACTTTA
AATTGAATAgttttgtCTTTCATTTGAGCATTGAGCTCGCGTGCTCTCTT
GCAAAATTCTTTGATTGTCAATCGTTCCAAAATCGTGAGGTCTTCTGTTG
CTCGATAGGGTGAAGGCCTTTGTATGTCGTGATGGTTCTCAAGACTTtgt
tcttgtcttcttcattttctaacACTATCTTGATTGGTCGATACCTCCCT
TCCTCCTCTCTCTCTTCCGTGAATACTCCAATCCTCTGTGTGTTTACAAT
TTTTATGTTCTTGATACCCAGTTGTAATCCAAGGATTCTGTACTTGATAA
ATTTCTCGTCGTAAATTTTCGTTGTATTCTCGGGATCCTCCAAATGTTCT
TTGATTCCATGGAAAATTAGGTTGCACGCTGTGGATCGTTGTTTGCCGAC
TGTTTCACTTCGAGTTATTTTCTCCACCTTATTCGATTGTTGATTCATAT
GCTTGGATACAGCTTCAGCATAACTAACCTCTTTCAGCTCTTGCTTCTTT
TCGATTATGATGTTCTCGATCTTTGTTTCTATCTTCTTCTCGAGTATGCT
AATCTTTGCTTCGaggctttctttgatttcttttgtaataACGTCGACGT
CTTTTGATTTCAGTTGGGAGATTTCCTCATTTTGTACTTTCATGATGTTT
TCACATGctttaatttccttttgaaGTCCTTCGATTTTGGTGTTTCTACA
TGTTTCAACTCGTTCCATCAGCTCTGGTGAGATCTTAACGCAACTTTGAC
ATTGGAAACTTCGAGATTTAAACGTTAAG Run BLAST on NCBI protein sequence of TCONS_00063841-protein >TCONS_00063841-protein ID=TCONS_00063841-protein|Name=TCONS_00063841-protein|organism=Clytia hemisphaerica|type=polypeptide|length=236bp
LTFKSRSFQCQSCVKISPELMERVETCRNTKIEGLQKEIKACENIMKVQN
EEISQLKSKDVDVITKEIKESLEAKISILEKKIETKIENIIIEKKQELKE
VSYAEAVSKHMNQQSNKVEKITRSETVGKQRSTACNLIFHGIKEHLEDPE
NTTKIYDEKFIKYRILGLQLGIKNIKIVNTQRIGVFTEEREEEGRYRPIK
IVLENEEDKNKVLRTITTYKGLHPIEQQKTSRFWND Run BLAST on NCBI transcript from alignment at scaffold_403:82771..83949 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063841 ID=TCONS_00063841|Name=TCONS_00063841|organism=Clytia hemisphaerica|type=transcript|length=1179bp|location=Sequence derived from alignment at scaffold_403:82771..83949 (Clytia hemisphaerica)
CTTAACGTTTAAATCTCGAAGTTTCCAATGTCAAAGTTGCGTTAAGATCT
CACCAGAGCTGATGGAACGAGTTGAAACATGTAGAAACACCAAAATCGAA
GGACttcaaaaggaaattaaagCATGTGAAAACATCATGAAAGTACAAAA
TGAGGAAATCTCCCAACTGAAATCAAAAGACGTCGACGTtattacaaaag
aaatcaaagaaagcctCGAAGCAAAGATTAGCATACTCGAGAAGAAGATA
GAAACAAAGATCGAGAACATCATAATCGAAAAGAAGCAAGAGCTGAAAGA
GGTTAGTTATGCTGAAGCTGTATCCAAGCATATGAATCAACAATCGAATA
AGGTGGAGAAAATAACTCGAAGTGAAACAGTCGGCAAACAACGATCCACA
GCGTGCAACCTAATTTTCCATGGAATCAAAGAACATTTGGAGGATCCCGA
GAATACAACGAAAATTTACGACGAGAAATTTATCAAGTACAGAATCCTTG
GATTACAACTGGGTATCAAGAACATAAAAATTGTAAACACACAGAGGATT
GGAGTATTCACGGAAGAGAGAGAGGAGGAAGGGAGGTATCGACCAATCAA
GATAGTgttagaaaatgaagaagacaagaacaAAGTCTTGAGAACCATCA
CGACATACAAAGGCCTTCACCCTATCGAGCAACAGAAGACCTCACGATTT
TGGAACGATTGACAATCAAAGAATTTTGCAAGAGAGCACGCGAGCTCAAT
GCTCAAATGAAAGacaaaacTATTCAATTTAAAGTCAGGGGAAGCCCCAG
AACAAAACTATACCTAAAGAAAATTATAACAACAAGCATTTGTAAAAAAA
GATTAGATTCTTAGAGGCCCACGGCGCGCCTTAAACCTCaatcctttaat
aaataaataataaataaatagttTTGTGAGAAAGAAGTCATCAATGTATC
TGCACACTGGGATACCAGCTGATCTAAGGTTTCATGTTGGCACTTTCatt
attttgtagattttcgtTTCGATTGCCGTTAGGAAAGCAACTATAAACAG
TAAACTGATaaagttgattttcaaattcCAATTTTAAATACTTTCTCATG
AATTTTTACACTATAATAAGCATCCTTCAGATCAATCTTAGCCATGGAGG
ATTCCTTTGAAATTATATTTAGTACGGTT Coding sequence (CDS) from alignment at scaffold_403:82771..83949 >TCONS_00063841 ID=TCONS_00063841|Name=TCONS_00063841|organism=Clytia hemisphaerica|type=CDS|length=711bp|location=Sequence derived from alignment at scaffold_403:82771..83949 (Clytia hemisphaerica)
TTAACGTTTAAATCTCGAAGTTTCCAATGTCAAAGTTGCGTTAAGATCTC
ACCAGAGCTGATGGAACGAGTTGAAACATGTAGAAACACCAAAATCGAAG
GACttcaaaaggaaattaaagCATGTGAAAACATCATGAAAGTACAAAAT
GAGGAAATCTCCCAACTGAAATCAAAAGACGTCGACGTtattacaaaaga
aatcaaagaaagcctCGAAGCAAAGATTAGCATACTCGAGAAGAAGATAG
AAACAAAGATCGAGAACATCATAATCGAAAAGAAGCAAGAGCTGAAAGAG
GTTAGTTATGCTGAAGCTGTATCCAAGCATATGAATCAACAATCGAATAA
GGTGGAGAAAATAACTCGAAGTGAAACAGTCGGCAAACAACGATCCACAG
CGTGCAACCTAATTTTCCATGGAATCAAAGAACATTTGGAGGATCCCGAG
AATACAACGAAAATTTACGACGAGAAATTTATCAAGTACAGAATCCTTGG
ATTACAACTGGGTATCAAGAACATAAAAATTGTAAACACACAGAGGATTG
GAGTATTCACGGAAGAGAGAGAGGAGGAAGGGAGGTATCGACCAATCAAG
ATAGTgttagaaaatgaagaagacaagaacaAAGTCTTGAGAACCATCAC
GACATACAAAGGCCTTCACCCTATCGAGCAACAGAAGACCTCACGATTTT
GGAACGATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063841-exon-scaffold_403-1491911889:82771..83949 | TCONS_00063841-exon-scaffold_403-1491911889:82771..83949 | Clytia hemisphaerica | exon |
| TCONS_00063841-exon-scaffold_403-1510915933:82771..83949 | TCONS_00063841-exon-scaffold_403-1510915933:82771..83949 | Clytia hemisphaerica | exon |
| TCONS_00063841-exon-scaffold_403-1575043694:82771..83949 | TCONS_00063841-exon-scaffold_403-1575043694:82771..83949 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_403 | supercontig | scaffold_403:82771..83949 . |
Blast
The following BLAST results are available for this feature:
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