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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063837 ID=TCONS_00063837|Name=TCONS_00063837|organism=Clytia hemisphaerica|type=transcript|length=1369bp
CTGAACTTAAGAAGTTCTTGAAAGTTACCAGGATTGTTAGTTTTAACGTC
TAGATGTTTTCCATCATCTCTGTGTCCTCTAAATGGTATATTTTGCCGAG
CACATAACAATGCTGTTTTCACGATTGGAATTAACTTTTCCCTGTTTTCG
GCGACTTGCTTGGAAACTTGCTGATTAAGGATGGATTCGATCGGTTGCTG
TTGCTTTGACTGTTGGTTCAAGAGGTTCTGCATGACAGAGATAGCCATTT
TATGCACTGGGCTTTTTGATTGATGATCTCGGAACTTTGCAGCCATAGCA
TTCCACCGAGTAAGTGGCTCAGTAAGCAgtaatttcatttttgtttggtC
CTTTCTTCCAAATAGAACACACGGTAAACAGTAAACACCATCATGATGAG
CGGAATATGCAAGCCAATTGAAATACTTTGATGAGTTGGAATCAAGATAA
TTGTTACTAAATCGCCATCGTCTTCCAAATTCCGAGCGAAAGGGGAAAGT
AAAGTTATAAGGTGGTTTCCACACATCATTTAAGAATGCTAACCTTTCAC
TGTCACTCATGTGATCTATTCTGGAAATAATAAGACCAATATCATTAGGG
TGGCATTCAATTGCTGATTTGACAGGCTGACTTACCCCTGGAGTAGCTTT
GGTTGACTGGGTAGGATTAATTGAAGTCCTGGTTGTCGAAAGGATGGACT
GAACTGGTTTGGTAGCAGAGCTGGTAGGAGTGTGGGTTATCAAAAGGGTG
GATTGAACTGGTGTTGTAGCAGAGCAGATCGGAGTGTGGGTTGTCGAAAG
GGTGGACTGAACTGGTTTGGAATCAGAGCTGGTATTAGCGTGGGTTGTCG
AAAGTGTGGACTGAACTGGTTTGGAAGCAGAGCTGGTTGGAGGGTGGGTT
GTCAAAAGAGTGGACTGAACTGGTTTGGTAGCAGAGCTGGTTGGAGTGTG
GGTTGACGAAAGGGTGGATTGAACTGGTTTGGTAGAAGAGCTGGTTGGCA
AAAGAGTGGACTGAACTGGTTTGGTGGCAGAGTTGGTCAAATGGCTGGAT
GATACTGGAAGcatcttttgctttttctctGGAACAGAAAAGCTAATTGT
TGATTGCTTTCTCCTTTTACGACATTCCATGGTATCAATCTTAATTGACT
GACTAAGAGCGCTGATTGATGTCAGTGAGGTTAAGTAATTGATATCAGTA
GTACAAAAGACAAAATGGTTTGGTTTTGTATATTCAGGTTTTGTGTTAGA
CCACAATAGTTGTATAGTGTTTTTGTTAGGATGATGAGTGCCAACAACAC
GTGTATAGAgcgaaaataaatttgaatttcttggaGTGTATACAGTTTTT
ATTTGACATCCTATCACAT Run BLAST on NCBI protein sequence of TCONS_00063837-protein >TCONS_00063837-protein ID=TCONS_00063837-protein|Name=TCONS_00063837-protein|organism=Clytia hemisphaerica|type=polypeptide|length=455bp
VIGCQIKTVYTPRNSNLFSLYTRVVGTHHPNKNTIQLLWSNTKPEYTKPN
HFVFCTTDINYLTSLTSISALSQSIKIDTMECRKRRKQSTISFSVPEKKQ
KMLPVSSSHLTNSATKPVQSTLLPTSSSTKPVQSTLSSTHTPTSSATKPV
QSTLLTTHPPTSSASKPVQSTLSTTHANTSSDSKPVQSTLSTTHTPICSA
TTPVQSTLLITHTPTSSATKPVQSILSTTRTSINPTQSTKATPGVSQPVK
SAIECHPNDIGLIISRIDHMSDSERLAFLNDVWKPPYNFTFPFRSEFGRR
WRFSNNYLDSNSSKYFNWLAYSAHHDGVYCLPCVLFGRKDQTKMKLLLTE
PLTRWNAMAAKFRDHQSKSPVHKMAISVMQNLLNQQSKQQQPIESILNQQ
VSKQVAENREKLIPIVKTALLCARQNIPFRGHRDDGKHLDVKTNNPGNFQ
ELLKF Run BLAST on NCBI transcript from alignment at scaffold_403:25539..26907 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063837 ID=TCONS_00063837|Name=TCONS_00063837|organism=Clytia hemisphaerica|type=transcript|length=1369bp|location=Sequence derived from alignment at scaffold_403:25539..26907 (Clytia hemisphaerica)
ATGTGATAGGATGTCAAATAAAAACTGTATACACtccaagaaattcaaat
ttattttcgcTCTATACACGTGTTGTTGGCACTCATCATCCTAACAAAAA
CACTATACAACTATTGTGGTCTAACACAAAACCTGAATATACAAAACCAA
ACCATTTTGTCTTTTGTACTACTGATATCAATTACTTAACCTCACTGACA
TCAATCAGCGCTCTTAGTCAGTCAATTAAGATTGATACCATGGAATGTCG
TAAAAGGAGAAAGCAATCAACAATTAGCTTTTCTGTTCCagagaaaaagc
aaaagatgCTTCCAGTATCATCCAGCCATTTGACCAACTCTGCCACCAAA
CCAGTTCAGTCCACTCTTTTGCCAACCAGCTCTTCTACCAAACCAGTTCA
ATCCACCCTTTCGTCAACCCACACTCCAACCAGCTCTGCTACCAAACCAG
TTCAGTCCACTCTTTTGACAACCCACCCTCCAACCAGCTCTGCTTCCAAA
CCAGTTCAGTCCACACTTTCGACAACCCACGCTAATACCAGCTCTGATTC
CAAACCAGTTCAGTCCACCCTTTCGACAACCCACACTCCGATCTGCTCTG
CTACAACACCAGTTCAATCCACCCTTTTGATAACCCACACTCCTACCAGC
TCTGCTACCAAACCAGTTCAGTCCATCCTTTCGACAACCAGGACTTCAAT
TAATCCTACCCAGTCAACCAAAGCTACTCCAGGGGTAAGTCAGCCTGTCA
AATCAGCAATTGAATGCCACCCTAATGATATTGGTCTTATTATTTCCAGA
ATAGATCACATGAGTGACAGTGAAAGGTTAGCATTCTTAAATGATGTGTG
GAAACCACCTTATAACTTTACTTTCCCCTTTCGCTCGGAATTTGGAAGAC
GATGGCGATTTAGTAACAATTATCTTGATTCCAACTCATCAAAGTATTTC
AATTGGCTTGCATATTCCGCTCATCATGATGGTGTTTACTGTTTACCGTG
TGTTCTATTTGGAAGAAAGGaccaaacaaaaatgaaattacTGCTTACTG
AGCCACTTACTCGGTGGAATGCTATGGCTGCAAAGTTCCGAGATCATCAA
TCAAAAAGCCCAGTGCATAAAATGGCTATCTCTGTCATGCAGAACCTCTT
GAACCAACAGTCAAAGCAACAGCAACCGATCGAATCCATCCTTAATCAGC
AAGTTTCCAAGCAAGTCGCCGAAAACAGGGAAAAGTTAATTCCAATCGTG
AAAACAGCATTGTTATGTGCTCGGCAAAATATACCATTTAGAGGACACAG
AGATGATGGAAAACATCTAGACGTTAAAACTAACAATCCTGGTAACTTTC
AAGAACTTCTTAAGTTCAG Coding sequence (CDS) from alignment at scaffold_403:25539..26907 >TCONS_00063837 ID=TCONS_00063837|Name=TCONS_00063837|organism=Clytia hemisphaerica|type=CDS|length=1365bp|location=Sequence derived from alignment at scaffold_403:25539..26907 (Clytia hemisphaerica)
GTGATAGGATGTCAAATAAAAACTGTATACACtccaagaaattcaaattt
attttcgcTCTATACACGTGTTGTTGGCACTCATCATCCTAACAAAAACA
CTATACAACTATTGTGGTCTAACACAAAACCTGAATATACAAAACCAAAC
CATTTTGTCTTTTGTACTACTGATATCAATTACTTAACCTCACTGACATC
AATCAGCGCTCTTAGTCAGTCAATTAAGATTGATACCATGGAATGTCGTA
AAAGGAGAAAGCAATCAACAATTAGCTTTTCTGTTCCagagaaaaagcaa
aagatgCTTCCAGTATCATCCAGCCATTTGACCAACTCTGCCACCAAACC
AGTTCAGTCCACTCTTTTGCCAACCAGCTCTTCTACCAAACCAGTTCAAT
CCACCCTTTCGTCAACCCACACTCCAACCAGCTCTGCTACCAAACCAGTT
CAGTCCACTCTTTTGACAACCCACCCTCCAACCAGCTCTGCTTCCAAACC
AGTTCAGTCCACACTTTCGACAACCCACGCTAATACCAGCTCTGATTCCA
AACCAGTTCAGTCCACCCTTTCGACAACCCACACTCCGATCTGCTCTGCT
ACAACACCAGTTCAATCCACCCTTTTGATAACCCACACTCCTACCAGCTC
TGCTACCAAACCAGTTCAGTCCATCCTTTCGACAACCAGGACTTCAATTA
ATCCTACCCAGTCAACCAAAGCTACTCCAGGGGTAAGTCAGCCTGTCAAA
TCAGCAATTGAATGCCACCCTAATGATATTGGTCTTATTATTTCCAGAAT
AGATCACATGAGTGACAGTGAAAGGTTAGCATTCTTAAATGATGTGTGGA
AACCACCTTATAACTTTACTTTCCCCTTTCGCTCGGAATTTGGAAGACGA
TGGCGATTTAGTAACAATTATCTTGATTCCAACTCATCAAAGTATTTCAA
TTGGCTTGCATATTCCGCTCATCATGATGGTGTTTACTGTTTACCGTGTG
TTCTATTTGGAAGAAAGGaccaaacaaaaatgaaattacTGCTTACTGAG
CCACTTACTCGGTGGAATGCTATGGCTGCAAAGTTCCGAGATCATCAATC
AAAAAGCCCAGTGCATAAAATGGCTATCTCTGTCATGCAGAACCTCTTGA
ACCAACAGTCAAAGCAACAGCAACCGATCGAATCCATCCTTAATCAGCAA
GTTTCCAAGCAAGTCGCCGAAAACAGGGAAAAGTTAATTCCAATCGTGAA
AACAGCATTGTTATGTGCTCGGCAAAATATACCATTTAGAGGACACAGAG
ATGATGGAAAACATCTAGACGTTAAAACTAACAATCCTGGTAACTTTCAA
GAACTTCTTAAGTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063837-exon-scaffold_403-1491911889:25539..26907 | TCONS_00063837-exon-scaffold_403-1491911889:25539..26907 | Clytia hemisphaerica | exon |
| TCONS_00063837-exon-scaffold_403-1510915933:25539..26907 | TCONS_00063837-exon-scaffold_403-1510915933:25539..26907 | Clytia hemisphaerica | exon |
| TCONS_00063837-exon-scaffold_403-1575043694:25539..26907 | TCONS_00063837-exon-scaffold_403-1575043694:25539..26907 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_403 | supercontig | scaffold_403:25539..26907 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR025398 | DUF4371 |
Blast
The following BLAST results are available for this feature:
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