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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063835 ID=TCONS_00063835|Name=TCONS_00063835|organism=Clytia hemisphaerica|type=transcript|length=2112bp
TGAAAATAGACTTAGGTACCTAAGTTTTGAACTGGGATAAAATTAAAACT
ACATTGAAACTACTCCTCGTCAGATTCATCTACTTCAGTTGACTGTAAGT
CTTCGTAATACTGATGATATTGTGGTAAGATTGCATTGTTTGCACACAAT
GCAAGTAAATCCTGAAAGAAATGATAGATAGTTTTATTACTGTAGTGCCA
TTATCGTTTGCATCTAAGATTCTAAACtatgattatggaaaaaatactTT
CTGACAGAATTCAGCAAACTGCAAAAACAGATTCACTGTCAAGAATATGA
AAGCACTTGAAATTTCTTATACCTCTTATTAAAACTCTCATTATAGGCGG
AATACTATTTAATAGACTTTAACTTTCAACAAACTTACTTTCAACAGTGC
TTTCGACACAGGCAGCCTTTGTTCGTTGAGTTGGGGTGGTGTTAAATCTT
TTCGGCCAGCTCGTGTTCCCTTCGGCAGGTTACCAATAATCACATTTGTG
AAGGGTGATAAAACATCATATCTGACACCTATGGAAATATGACCATTGTT
GCTTGGAACTGATTGAATATGCCGCATCTTGAGCCAATGAACCTTGGTCT
TCTTATTTGTTTCTGTGCATGGTGTCGAATCTTTCAGTAACGGGTTGTAG
ACGCCTGCCAAATCTGTCTGGAAGTTGAAAAAGTCGGTTAATCCCATAGG
AACCACCTTGTACGGGTTTTTTCGTGAAGCTTTTTCGATCAATGTATTCC
ACTGTGAAGGATGGTGAATGTTAACCCCTGATTTCGCTCGATCAATAACG
GAATGGGCCGTATCGTTAATGTTTTGGGTGTGTCCCTTCTCTAAATAAAC
AAGATTTACTGTAATATTTCTCTTGTTGGCCATTAGAGTCAGCATTTGGA
TAATGAAACGATTCTTATTTTGGCCCGGGCAGTTATCAGCGAATAAATAA
ATTGTTTTGACTTGAGGTGGTAGGCTTTCGATATACAGCTTAAGACAACT
GGAAATTTCGTTCGAGCCACGTTTGGCAACAGTTTGGTTCCAAACATAAC
ATGTTGTGGTCCGTGTGACCAAATCTGTTACTGTTAAATTATAAACCGCG
AGTttcctcttataaaaaaagtcagAGTGCTCCCCAAAGGGAACTTGAAG
AACCTTCTGCAAATCGAAAGCTGAGACACAGATGGTTTCGTCTTTTGATG
CtttctctttcattttattcttaaaatCTCTTGCCTGGTCCTTGTTTTTT
AAGTGGTTTTCGTATTTCTCTTTAAGATTGGATTTATCAACAGCGTTGCG
ATATTCTAAACATACATCACATTGATCTTTTTTTGGTATGTGGAACCCCA
GATTAAAGTTTTCTGTAAATACTTTTCTATAGAAATGTTCCTCTATATTT
GAATGCGGATGTTTGATTTTAAACAACTCAAACATTTTTCTGATGTTCAA
GTTTGATGCAAGATATTGTCTTTCTGTTCCTTCGCGGCAAAAATGGCTTT
CCATAACAGGGAACAGCTTGATGtgattttttcactaaatttaatGCATC
TTCACCATATTTGATATTAGTTTTACTCTTTCCCCTCTTGTCGTCAGCAA
CGAGATCGCCCTCTTCCTTTTTCGAGATTGCATTTCGCACAAATTTTCGT
GTAATGTCAAATGTTGATAGAAACATTGTCTGACATACCTGTTGACCCTT
CCAAAGATATTTAAATGGGTTACTTCTATTATTGTGGATTTCGTTTCTTG
GGCGCTTTCGTACAGGAGCTTCGATTTCCAGTGAATTTAAAATATACTGT
CTCTGTTTGTTGATTTCTCCCAGAGTCCAGTAATTGTCAAATAAGTTTTT
TCTAGCCTCCTCAGATATTTTGGCATTGCAATCGAGCCTACAGTTACTGC
AAGGCTTACTCATTGACCTTGCTTTTGCATTTGTTTTtctgtttggaaaa
tttttgtaagggCTATATGCTTCACCAGTGTTTCTAAGTTTCTTCTTTTT
ACTCCTTTCCCAGTTTTCCTCCAGCCTTTTTCGTTTTCGACCACGTTCGA
ACTCTTTGATGTTTGTTAAGGATGGATCACTGGCTGGAGTTACATCGTAG
TTTGAGTTATTC Run BLAST on NCBI protein sequence of TCONS_00063835-protein >TCONS_00063835-protein ID=TCONS_00063835-protein|Name=TCONS_00063835-protein|organism=Clytia hemisphaerica|type=polypeptide|length=381bp
MESHFCREGTERQYLASNLNIRKMFELFKIKHPHSNIEEHFYRKVFTENF
NLGFHIPKKDQCDVCLEYRNAVDKSNLKEKYENHLKNKDQARDFKNKMKE
KASKDETICVSAFDLQKVLQVPFGEHSDFFYKRKLAVYNLTVTDLVTRTT
TCYVWNQTVAKRGSNEISSCLKLYIESLPPQVKTIYLFADNCPGQNKNRF
IIQMLTLMANKRNITVNLVYLEKGHTQNINDTAHSVIDRAKSGVNIHHPS
QWNTLIEKASRKNPYKVVPMGLTDFFNFQTDLAGVYNPLLKDSTPCTETN
KKTKVHWLKMRHIQSVPSNNGHISIGVRYDVLSPFTNVIIGNLPKGTRAG
RKDLTPPQLNEQRLPVSKALLKVSLLKVKVY Run BLAST on NCBI transcript from alignment at scaffold_403:13464..15575 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063835 ID=TCONS_00063835|Name=TCONS_00063835|organism=Clytia hemisphaerica|type=transcript|length=2112bp|location=Sequence derived from alignment at scaffold_403:13464..15575 (Clytia hemisphaerica)
GAATAACTCAAACTACGATGTAACTCCAGCCAGTGATCCATCCTTAACAA
ACATCAAAGAGTTCGAACGTGGTCGAAAACGAAAAAGGCTGGAGGAAAAC
TGGGAAAGGAGTAAAAAGAAGAAACTTAGAAACACTGGTGAAGCATATAG
cccttacaaaaattttccaaacagaAAAACAAATGCAAAAGCAAGGTCAA
TGAGTAAGCCTTGCAGTAACTGTAGGCTCGATTGCAATGCCAAAATATCT
GAGGAGGCTAGAAAAAACTTATTTGACAATTACTGGACTCTGGGAGAAAT
CAACAAACAGAGACAGTATATTTTAAATTCACTGGAAATCGAAGCTCCTG
TACGAAAGCGCCCAAGAAACGAAATCCACAATAATAGAAGTAACCCATTT
AAATATCTTTGGAAGGGTCAACAGGTATGTCAGACAATGTTTCTATCAAC
ATTTGACATTACACGAAAATTTGTGCGAAATGCAATCTCGAAAAAGGAAG
AGGGCGATCTCGTTGCTGACGACAAGAGGGGAAAGAGTAAAACTAATATC
AAATATGGTGAAGATGCattaaatttagtgaaaaaatcaCATCAAGCTGT
TCCCTGTTATGGAAAGCCATTTTTGCCGCGAAGGAACAGAAAGACAATAT
CTTGCATCAAACTTGAACATCAGAAAAATGTTTGAGTTGTTTAAAATCAA
ACATCCGCATTCAAATATAGAGGAACATTTCTATAGAAAAGTATTTACAG
AAAACTTTAATCTGGGGTTCCACATACCAAAAAAAGATCAATGTGATGTA
TGTTTAGAATATCGCAACGCTGTTGATAAATCCAATCTTAAAGAGAAATA
CGAAAACCACTTAAAAAACAAGGACCAGGCAAGAGattttaagaataaaa
tgaaagagaaaGCATCAAAAGACGAAACCATCTGTGTCTCAGCTTTCGAT
TTGCAGAAGGTTCTTCAAGTTCCCTTTGGGGAGCACTctgacttttttta
taagaggaaACTCGCGGTTTATAATTTAACAGTAACAGATTTGGTCACAC
GGACCACAACATGTTATGTTTGGAACCAAACTGTTGCCAAACGTGGCTCG
AACGAAATTTCCAGTTGTCTTAAGCTGTATATCGAAAGCCTACCACCTCA
AGTCAAAACAATTTATTTATTCGCTGATAACTGCCCGGGCCAAAATAAGA
ATCGTTTCATTATCCAAATGCTGACTCTAATGGCCAACAAGAGAAATATT
ACAGTAAATCTTGTTTATTTAGAGAAGGGACACACCCAAAACATTAACGA
TACGGCCCATTCCGTTATTGATCGAGCGAAATCAGGGGTTAACATTCACC
ATCCTTCACAGTGGAATACATTGATCGAAAAAGCTTCACGAAAAAACCCG
TACAAGGTGGTTCCTATGGGATTAACCGACTTTTTCAACTTCCAGACAGA
TTTGGCAGGCGTCTACAACCCGTTACTGAAAGATTCGACACCATGCACAG
AAACAAATAAGAAGACCAAGGTTCATTGGCTCAAGATGCGGCATATTCAA
TCAGTTCCAAGCAACAATGGTCATATTTCCATAGGTGTCAGATATGATGT
TTTATCACCCTTCACAAATGTGATTATTGGTAACCTGCCGAAGGGAACAC
GAGCTGGCCGAAAAGATTTAACACCACCCCAACTCAACGAACAAAGGCTG
CCTGTGTCGAAAGCACTGTTGAAAGTAAGTTTGTTGAAAGTTAAAGTCTA
TTAAATAGTATTCCGCCTATAATGAGAGTTTTAATAAGAGGTATAAGAAA
TTTCAAGTGCTTTCATATTCTTGACAGTGAATCTGTTTTTGCAGTTTGCT
GAATTCTGTCAGAAagtattttttccataatcataGTTTAGAATCTTAGA
TGCAAACGATAATGGCACTACAGTAATAAAACTATCTATCATTTCTTTCA
GGATTTACTTGCATTGTGTGCAAACAATGCAATCTTACCACAATATCATC
AGTATTACGAAGACTTACAGTCAACTGAAGTAGATGAATCTGACGAGGAG
TAGTTTCAATGTAGTTTTAATTTTATCCCAGTTCAAAACTTAGGTACCTA
AGTCTATTTTCA Coding sequence (CDS) from alignment at scaffold_403:13464..15575 >TCONS_00063835 ID=TCONS_00063835|Name=TCONS_00063835|organism=Clytia hemisphaerica|type=CDS|length=1146bp|location=Sequence derived from alignment at scaffold_403:13464..15575 (Clytia hemisphaerica)
ATGGAAAGCCATTTTTGCCGCGAAGGAACAGAAAGACAATATCTTGCATC
AAACTTGAACATCAGAAAAATGTTTGAGTTGTTTAAAATCAAACATCCGC
ATTCAAATATAGAGGAACATTTCTATAGAAAAGTATTTACAGAAAACTTT
AATCTGGGGTTCCACATACCAAAAAAAGATCAATGTGATGTATGTTTAGA
ATATCGCAACGCTGTTGATAAATCCAATCTTAAAGAGAAATACGAAAACC
ACTTAAAAAACAAGGACCAGGCAAGAGattttaagaataaaatgaaagag
aaaGCATCAAAAGACGAAACCATCTGTGTCTCAGCTTTCGATTTGCAGAA
GGTTCTTCAAGTTCCCTTTGGGGAGCACTctgactttttttataagagga
aACTCGCGGTTTATAATTTAACAGTAACAGATTTGGTCACACGGACCACA
ACATGTTATGTTTGGAACCAAACTGTTGCCAAACGTGGCTCGAACGAAAT
TTCCAGTTGTCTTAAGCTGTATATCGAAAGCCTACCACCTCAAGTCAAAA
CAATTTATTTATTCGCTGATAACTGCCCGGGCCAAAATAAGAATCGTTTC
ATTATCCAAATGCTGACTCTAATGGCCAACAAGAGAAATATTACAGTAAA
TCTTGTTTATTTAGAGAAGGGACACACCCAAAACATTAACGATACGGCCC
ATTCCGTTATTGATCGAGCGAAATCAGGGGTTAACATTCACCATCCTTCA
CAGTGGAATACATTGATCGAAAAAGCTTCACGAAAAAACCCGTACAAGGT
GGTTCCTATGGGATTAACCGACTTTTTCAACTTCCAGACAGATTTGGCAG
GCGTCTACAACCCGTTACTGAAAGATTCGACACCATGCACAGAAACAAAT
AAGAAGACCAAGGTTCATTGGCTCAAGATGCGGCATATTCAATCAGTTCC
AAGCAACAATGGTCATATTTCCATAGGTGTCAGATATGATGTTTTATCAC
CCTTCACAAATGTGATTATTGGTAACCTGCCGAAGGGAACACGAGCTGGC
CGAAAAGATTTAACACCACCCCAACTCAACGAACAAAGGCTGCCTGTGTC
GAAAGCACTGTTGAAAGTAAGTTTGTTGAAAGTTAAAGTCTATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063835-exon-scaffold_403-1491911889:13464..15575 | TCONS_00063835-exon-scaffold_403-1491911889:13464..15575 | Clytia hemisphaerica | exon |
| TCONS_00063835-exon-scaffold_403-1510915933:13464..15575 | TCONS_00063835-exon-scaffold_403-1510915933:13464..15575 | Clytia hemisphaerica | exon |
| TCONS_00063835-exon-scaffold_403-1575043694:13464..15575 | TCONS_00063835-exon-scaffold_403-1575043694:13464..15575 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_403 | supercontig | scaffold_403:13464..15575 . |
Blast
The following BLAST results are available for this feature:
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