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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063831 ID=TCONS_00063831|Name=TCONS_00063831|organism=Clytia hemisphaerica|type=transcript|length=1454bpRun BLAST on NCBI protein sequence of TCONS_00063831-protein >TCONS_00063831-protein ID=TCONS_00063831-protein|Name=TCONS_00063831-protein|organism=Clytia hemisphaerica|type=polypeptide|length=469bp LFHSRENSKMITEELFFIYDSEAMQTEYDTIEESLLFHQPKFVAQEEEFVRun BLAST on NCBI transcript from alignment at scaffold_403:60501..75909+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00063831 ID=TCONS_00063831|Name=TCONS_00063831|organism=Clytia hemisphaerica|type=transcript|length=15409bp|location=Sequence derived from alignment at scaffold_403:60501..75909+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_403:60501..75909+ >TCONS_00063831 ID=TCONS_00063831|Name=TCONS_00063831|organism=Clytia hemisphaerica|type=CDS|length=16920bp|location=Sequence derived from alignment at scaffold_403:60501..75909+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00063831 vs. Swiss-Prot (Human)
Match: HPS4 (Hermansky-Pudlak syndrome 4 protein OS=Homo sapiens GN=HPS4 PE=1 SV=2) HSP 1 Score: 88.1965 bits (217), Expect = 2.425e-18 Identity = 65/249 (26.10%), Postives = 117/249 (46.99%), Query Frame = 3
Query: 48 FFIYDSEAMQTEYDTIEESLLFHQPKFVAQEEEFXXXXXXXXXXXXFSNDLAGNIPSILRLEKMKFSVKKINSYLIFLGCSRCDMSDHVLKIQLQNFIEIFNFYHRSFDHVKNACGDDSNNFRKELAKICQCYLPHAKNYNSSWNSIFSPIPSVELNKVSYVILMKVNEILESCQRRQNVLCGALFSEERLVSTQISHEILFNLTL--IKPGQKNLPAERFNP---GFECPYGVNFYKVFVTKKQYESL 779
FF+YD ++ E D + + P +++ +L + S D++ + P+++RL K+KF++K YL LGC+ ++ D K L + FNFY+ C ++EL+ ++ S + IF+ + +++ KV ++L+K IL++CQR ++L G + + +VSTQ+ + + L P ++ LP P G P V VFVTK++ SL
Sbjct: 18 FFLYDGSKVKEEGDPTRAGICYFYPSQTLLDQQELLCGQIAGVVRCVS-DISDSPPTLVRLRKLKFAIKVDGDYLWVLGCA-VELPDVSCKRFLDQLVGFFNFYNGPVSLAYENCS------QEELSTEWDTFIEQILKNTSDLHKIFNSLWNLDQTKVEPLLLLKAARILQTCQRSPHILAGCILYKGLIVSTQLPPSLTAKVLLHRTAPQEQRLPTGEDAPQEHGAALPPNVQIIPVFVTKEEAISL 258 The following BLAST results are available for this feature:
BLAST of TCONS_00063831 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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