TCONS_00063818 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063818
Unique NameTCONS_00063818
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length587

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063818 ID=TCONS_00063818|Name=TCONS_00063818|organism=Clytia hemisphaerica|type=transcript|length=587bp
TCATTTTTAGGATAAAAAAATTGCCAtagttttttaaaagtttatttatg
CATTCGCAAACAAGGTTCATCATGTGGAAGCACCGTTTTTACAAATGAAA
GGCTTTTTCAGGTGAGTTTCTctagaaaagttagaaaaagacatcacttt
caaaaatgaaaactcgaaTATTGCAAGCTTTTCATTGGAATGCTAAATAC
TGATGTAATTGATTTATATGGTATATTGTTAACTTCAGGGCCTCAACGAC
ACAGGGTTTACCGAGTTGCTTTGGTAATATGTGTTACAtattgtttttgg
aagattgtttaataaaTTATAAcggatcattttcttatttgaataaGAAA
GAGTATTTTTTCCACAGTTCGtattttgaacatgggaaaaatgaaacaat
cagccaaaaatagCACCCAGAAATCAACAACATTCCAAAACTGTTGTGGT
ACAAAGTCagtagatttatttttaaagCTTGCTTTAGAGATTCGGCCTaa
agttttaaataaagtgtatgcagttgcctttctcatacaaatCTGTCACA
GGGTCAGGTTCCGAACGAAAAATAGGAGAGATAGAGA
Run BLAST on NCBI

transcript from alignment at scaffold_400:249233..249819

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063818 ID=TCONS_00063818|Name=TCONS_00063818|organism=Clytia hemisphaerica|type=transcript|length=587bp|location=Sequence derived from alignment at scaffold_400:249233..249819 (Clytia hemisphaerica)
TCTCTATCTCTCCTATTTTTCGTTCGGAACCTGACCCTGTGACAGatttg
tatgagaaaggcaactgcatacactttatttaaaactttAGGCCGAATCT
CTAAAGCAAGctttaaaaataaatctactGACTTTGTACCACAACAGTTT
TGGAATGTTGTTGATTTCTGGGTGctatttttggctgattgtttcatttt
tcccatgttcaaaataCGAACTGTGGAAAAAATACTCTTTCttattcaaa
taagaaaatgatccgTTATAAtttattaaacaatcttccaaaaacaataT
GTAACACATATTACCAAAGCAACTCGGTAAACCCTGTGTCGTTGAGGCCC
TGAAGTTAACAATATACCATATAAATCAATTACATCAGTATTTAGCATTC
CAATGAAAAGCTTGCAATAttcgagttttcatttttgaaagtgatgtctt
tttctaacttttctagAGAAACTCACCTGAAAAAGCCTTTCATTTGTAAA
AACGGTGCTTCCACATGATGAACCTTGTTTGCGAATGcataaataaactt
ttaaaaaactaTGGCAATTTTTTTATCCTAAAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040010XLOC_040010Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063818-exon-scaffold_400-1491911889:249233..249819TCONS_00063818-exon-scaffold_400-1491911889:249233..249819Clytia hemisphaericaexon
TCONS_00063818-exon-scaffold_400-1510915933:249233..249819TCONS_00063818-exon-scaffold_400-1510915933:249233..249819Clytia hemisphaericaexon
TCONS_00063818-exon-scaffold_400-1575043694:249233..249819TCONS_00063818-exon-scaffold_400-1575043694:249233..249819Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_400supercontigscaffold_400:249233..249819 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.15506	1.72223	5.86602	10.0896	0	0.214484	0.562696	0.338902	0.316364	0.195934	0.380357	0.464695	0.519397	0.556926	0.73705	0.380537	0.0704577	0.216651	1.09749	0.365007	0.595077	0	0.215228	0.0978367	0	0.146353	0.462811	0.137348	0.31252	0.3635
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063818 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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