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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063812 ID=TCONS_00063812|Name=TCONS_00063812|organism=Clytia hemisphaerica|type=transcript|length=861bp
NAGACCTTTGCATCGTGAAGTTCGGGAAGTATTTCTTCGAATTTGGGTAT
GACGTGTCTTTCACGGATTATGGCTTTGTTTGCTTGCCGCATGTCTAGAC
AGAATCTGATTTGAGATGGATCTTTCTTCGGGACAACAACATAGGGATTG
AGCCAGGATGTAGGTTCATTGGTAGGTACTTCCTCGATAATGTCAGAGTC
TAATAGACGTTGGATCTCTTCATCAACTCGTTGACGTGTATGCCATGGGA
CTCGCCGGATTGGTTGTTGCACTGGTGTCATATCTTGGTTCATATGGAGC
TTGACCTGAACGTTGGTCATGCATCCAAGTCctttaaagatatttgaatG
CTTATCAAGAATGTTTGTAGTGGGAGTGACAGGTTTGTCTACTTTATTTA
CTTCTTCTGATGGCGGTTGCATGTTTGGAGGTGGTCCAACCCGGAGAAGG
TCAAGTTGCTCTGCGGTTTGGCGGCTTAGAAGTGATCCACCTTGACCTTT
GACAACTACGAACATTGCTTTGACTGATGAGTTCTGGCTGGGTGTTGATA
CGTTTGCAGTGAACTTTCCAACTGTGTTGAGTGGGTTGTTGGCTTGAAAT
GTGAAGATACGAATGTTCGTCTGATCAAGATGTGGCTTAGAACGCATTGC
CTTGAAGGTTGGTTCATCTAGGATGTTGACTGAGGCTCCTGAGTCGATTA
GGATGTTGACTGTGTGTCCATCTATGTTGATTGGAAATAGTGGTGGTTTC
AGTTTTGGTGGATTGTCGATATGGAACACATAATCGTCATCTGAGTCGGA
ATCTTTCTCGTCTGGCTGTTGTTGAACAGTCAACCAACTCCAGTTTAGTC
GACAATAAAGT Run BLAST on NCBI protein sequence of TCONS_00063812-protein >TCONS_00063812-protein ID=TCONS_00063812-protein|Name=TCONS_00063812-protein|organism=Clytia hemisphaerica|type=polypeptide|length=286bp
LYCRLNWSWLTVQQQPDEKDSDSDDDYVFHIDNPPKLKPPLFPINIDGHT
VNILIDSGASVNILDEPTFKAMRSKPHLDQTNIRIFTFQANNPLNTVGKF
TANVSTPSQNSSVKAMFVVVKGQGGSLLSRQTAEQLDLLRVGPPPNMQPP
SEEVNKVDKPVTPTTNILDKHSNIFKGLGCMTNVQVKLHMNQDMTPVQQP
IRRVPWHTRQRVDEEIQRLLDSDIIEEVPTNEPTSWLNPYVVVPKKDPSQ
IRFCLDMRQANKAIIRERHVIPKFEEILPELHDAKV Run BLAST on NCBI transcript from alignment at scaffold_400:48963..49823 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063812 ID=TCONS_00063812|Name=TCONS_00063812|organism=Clytia hemisphaerica|type=transcript|length=861bp|location=Sequence derived from alignment at scaffold_400:48963..49823 (Clytia hemisphaerica)
ACTTTATTGTCGACTAAACTGGAGTTGGTTGACTGTTCAACAACAGCCAG
ACGAGAAAGATTCCGACTCAGATGACGATTATGTGTTCCATATCGACAAT
CCACCAAAACTGAAACCACCACTATTTCCAATCAACATAGATGGACACAC
AGTCAACATCCTAATCGACTCAGGAGCCTCAGTCAACATCCTAGATGAAC
CAACCTTCAAGGCAATGCGTTCTAAGCCACATCTTGATCAGACGAACATT
CGTATCTTCACATTTCAAGCCAACAACCCACTCAACACAGTTGGAAAGTT
CACTGCAAACGTATCAACACCCAGCCAGAACTCATCAGTCAAAGCAATGT
TCGTAGTTGTCAAAGGTCAAGGTGGATCACTTCTAAGCCGCCAAACCGCA
GAGCAACTTGACCTTCTCCGGGTTGGACCACCTCCAAACATGCAACCGCC
ATCAGAAGAAGTAAATAAAGTAGACAAACCTGTCACTCCCACTACAAACA
TTCTTGATAAGCattcaaatatctttaaagGACTTGGATGCATGACCAAC
GTTCAGGTCAAGCTCCATATGAACCAAGATATGACACCAGTGCAACAACC
AATCCGGCGAGTCCCATGGCATACACGTCAACGAGTTGATGAAGAGATCC
AACGTCTATTAGACTCTGACATTATCGAGGAAGTACCTACCAATGAACCT
ACATCCTGGCTCAATCCCTATGTTGTTGTCCCGAAGAAAGATCCATCTCA
AATCAGATTCTGTCTAGACATGCGGCAAGCAAACAAAGCCATAATCCGTG
AAAGACACGTCATACCCAAATTCGAAGAAATACTTCCCGAACTTCACGAT
GCAAAGGTCTN Coding sequence (CDS) from alignment at scaffold_400:48963..49823 >TCONS_00063812 ID=TCONS_00063812|Name=TCONS_00063812|organism=Clytia hemisphaerica|type=CDS|length=858bp|location=Sequence derived from alignment at scaffold_400:48963..49823 (Clytia hemisphaerica)
CTTTATTGTCGACTAAACTGGAGTTGGTTGACTGTTCAACAACAGCCAGA
CGAGAAAGATTCCGACTCAGATGACGATTATGTGTTCCATATCGACAATC
CACCAAAACTGAAACCACCACTATTTCCAATCAACATAGATGGACACACA
GTCAACATCCTAATCGACTCAGGAGCCTCAGTCAACATCCTAGATGAACC
AACCTTCAAGGCAATGCGTTCTAAGCCACATCTTGATCAGACGAACATTC
GTATCTTCACATTTCAAGCCAACAACCCACTCAACACAGTTGGAAAGTTC
ACTGCAAACGTATCAACACCCAGCCAGAACTCATCAGTCAAAGCAATGTT
CGTAGTTGTCAAAGGTCAAGGTGGATCACTTCTAAGCCGCCAAACCGCAG
AGCAACTTGACCTTCTCCGGGTTGGACCACCTCCAAACATGCAACCGCCA
TCAGAAGAAGTAAATAAAGTAGACAAACCTGTCACTCCCACTACAAACAT
TCTTGATAAGCattcaaatatctttaaagGACTTGGATGCATGACCAACG
TTCAGGTCAAGCTCCATATGAACCAAGATATGACACCAGTGCAACAACCA
ATCCGGCGAGTCCCATGGCATACACGTCAACGAGTTGATGAAGAGATCCA
ACGTCTATTAGACTCTGACATTATCGAGGAAGTACCTACCAATGAACCTA
CATCCTGGCTCAATCCCTATGTTGTTGTCCCGAAGAAAGATCCATCTCAA
ATCAGATTCTGTCTAGACATGCGGCAAGCAAACAAAGCCATAATCCGTGA
AAGACACGTCATACCCAAATTCGAAGAAATACTTCCCGAACTTCACGATG
CAAAGGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063812-exon-scaffold_400-1491911889:48963..49823 | TCONS_00063812-exon-scaffold_400-1491911889:48963..49823 | Clytia hemisphaerica | exon |
| TCONS_00063812-exon-scaffold_400-1510915933:48963..49823 | TCONS_00063812-exon-scaffold_400-1510915933:48963..49823 | Clytia hemisphaerica | exon |
| TCONS_00063812-exon-scaffold_400-1575043694:48963..49823 | TCONS_00063812-exon-scaffold_400-1575043694:48963..49823 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_400 | supercontig | scaffold_400:48963..49823 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR021109 | Peptidase_aspartic_dom |
| IPR001969 | Aspartic_peptidase_AS |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004190 | aspartic-type endopeptidase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006508 | proteolysis |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006508 |
proteolysis |
| molecular_function |
GO:0004190 |
aspartic-type endopeptidase activity |
Blast
The following BLAST results are available for this feature:
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