TCONS_00063810 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063810
Unique NameTCONS_00063810
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length315

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063810 ID=TCONS_00063810|Name=TCONS_00063810|organism=Clytia hemisphaerica|type=transcript|length=315bp
CTTTAGCTTCGACAGTGTGTTGGTATGTTAGATATCTTCCTTTGTTACGC
CTTATGATGAAGATGATAGCTACAGTACAAGCAAGTGTACCGATGATTCC
TGCTATGATGAAACCTTGGTAGTCAATGCTCCCTTGTCCTGATTTTGATT
GAGACGAAATACTACTCAAAGATCTGCATGTTTTAGCTGTATAGGCACAA
GTCCCTTCTTGAGACGATTGATCATGTAGTTCACCGGCTTGACATCTAGC
CTTGTTTCCAGGGATCCTGACTGATTCGTTGTATACTGAAGGAACTAAGC
AATCTTTCGTTCTGT
Run BLAST on NCBI

transcript from alignment at scaffold_400:221675..222573-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063810 ID=TCONS_00063810|Name=TCONS_00063810|organism=Clytia hemisphaerica|type=transcript|length=899bp|location=Sequence derived from alignment at scaffold_400:221675..222573- (Clytia hemisphaerica)
CTTTAGCTTCGACAGTGTGTTGGTATGTTAGATATCTTCCTTTGTTACGC
CTTATGATGAAGATGATAGCTACAGTACAAGCAAGTGTACCGATGATTCC
TGCTATGATGAAACCTTGGTAGTCAATGCTCCCTTGTCCTGATTTTGATT
GAGACGAAATACCTTTAGGGAAAGAACATTTGGTTTAAATTTCAACCGGA
GAATGATCTCTAATGTTCTTTCCAGTGATAATTTTTTCTCAGAAAGAATC
TAATCTTGCGGACAGCCGATCAAATAAATGTGTTGGTTGCAGCTGGTCGC
AGATATAAAAGTTTAACAATAGAAGGAAATTCTAGATATATGTATCTCTA
GATCTTTTACAGCATTTTTATGAACCGCCTGAGATCCTTTAATTCCTTGA
ATCCTTCTTTAGTGTCATAAGAATATCATTAATATCAAATTAGAGCAAGA
ACACACGTTTTTATAAGCAAAAACTATATAAGAACAAAATACTTAAATGG
CTAAAATATCAAGAACAAGTTAAGAACACTTAAAATGTTTTATGGAAATT
GCATGATAATACTCACAAAATGGCGAAAATTATATTTTTAGCACATCTTT
AAAACAACAGAAGAGGCTTAAATCTTAAAAAGGGAAGAAAATCCGAAAGC
TTCAAAAAATTTGCATGTTTTTATAACAAAACGTTTACATACTACTCAAA
GATCTGCATGTTTTAGCTGTATAGGCACAAGTCCCATCTTGAGACGATTG
ATCGTGTAGTTCACCGGCTGNTGTATAGGCACAAGTCCCTTCTTGAGACG
ATTGATCATGTAGTTCACCGGCTTGACATCTAGCCTTGTTTCCAGGGATC
CTGACTGATTCGTTGTATACTGAAGGAACTAAGCAATCTTTCGTTCTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040002XLOC_040002Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063810-exon-scaffold_400-1575043694:222416..222573TCONS_00063810-exon-scaffold_400-1575043694:222416..222573Clytia hemisphaericaexon
TCONS_00063810-exon-scaffold_400-1575043694:221850..221885TCONS_00063810-exon-scaffold_400-1575043694:221850..221885Clytia hemisphaericaexon
TCONS_00063810-exon-scaffold_400-1575043694:221675..221795TCONS_00063810-exon-scaffold_400-1575043694:221675..221795Clytia hemisphaericaexon
TCONS_00063810-exon-scaffold_400-1510915933:222416..222573TCONS_00063810-exon-scaffold_400-1510915933:222416..222573Clytia hemisphaericaexon
TCONS_00063810-exon-scaffold_400-1510915933:221850..221885TCONS_00063810-exon-scaffold_400-1510915933:221850..221885Clytia hemisphaericaexon
TCONS_00063810-exon-scaffold_400-1510915933:221675..221795TCONS_00063810-exon-scaffold_400-1510915933:221675..221795Clytia hemisphaericaexon
TCONS_00063810-exon-scaffold_400-1491911889:222416..222573TCONS_00063810-exon-scaffold_400-1491911889:222416..222573Clytia hemisphaericaexon
TCONS_00063810-exon-scaffold_400-1491911889:221850..221885TCONS_00063810-exon-scaffold_400-1491911889:221850..221885Clytia hemisphaericaexon
TCONS_00063810-exon-scaffold_400-1491911889:221675..221795TCONS_00063810-exon-scaffold_400-1491911889:221675..221795Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_400supercontigscaffold_400:221675..222573 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.26354	2.84666	2.27733	2.88314	0.468344	0.443943	2.74367	3.93183	2.63306	0.443318	0.605599	1.21658	8.97688	7.34161	4.06599	7.6925	5.60025	4.44219	6.32912	3.66994	4.25798	4.38321	5.40748	5.29454	1.10398	7.60963	1.9339	1.26084	3.85707	0.320481
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063810 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top