TCONS_00063806 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063806
Unique NameTCONS_00063806
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2975

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063806 ID=TCONS_00063806|Name=TCONS_00063806|organism=Clytia hemisphaerica|type=transcript|length=2975bp
CTCAATTGTAATATTGCCAGATGTTGCAGCTCTTCTCTTGCGACGTTGCG
CAATATTTTGTGCACGTACATAAGTATCTGCAAGTCTGCGTTCCATTTGA
GATTTGAAAGTGTCGGAAGTCACATCCTCTGTTTGATCCCTGACTATGAT
GGTGAGCTCAACCAGGGTTTGATTGGTTGTTGGTGCAGTTGTGGGTGTTG
GTGGCTGGGTGGTAATTACTGTTGAAGTGGGCGGTTGTAAAGATTGTGTG
GCTAACAGTTCTgatgttttaaaagttttggtgGTGGGTGATTGGGAtac
taaaataaaatgtgtTGTAAATGAAACATAAGAAGGTGCAATAAAAACTG
GTGATGTGGTCAATAGTGGTTCTGTTGTGATCGTCATTACTGTAGTGCTT
TGGAGTTGTGTCATTGGTGCCAAGTGTGCTGTGCTTAGAGTGTTAATTGT
ACTTTGGTTTGTATGTGCAGTAGTTGCGAATGTTATTTCAGTGCTTGAAG
CAGTGTTTGTCAAAAGTGTTCTTTCTGTCAATGCTGGAGTAACTGTGCTA
ATCTGTAATGTGGAAATTATACCTTTTGTAAAGTCAATTGTAGTCAATGT
ATTATAATATGTTGTTAATGATGATGTCAATATAATTTTTGTCACTGTTA
ATTCTATTGATTGTAAGGTCGTGTAAATTTCTGTCATTGTCGTGATCGAT
GAAAAATCAGTTGATGTTTTACCTTCACTGGCATATATTGATGTCTTGAG
ACTTTGACCATGACAAATTGACGTAGTGACATATCTGGTGCAGTATGCAA
TGTTTGTGGATGATGGAAAGATTTGAGGTGAAGACATTCTGCTGCCTTGT
ATTGATGGTGAGATCTGTGAAGATGACATTGACTGAAGTGCAAGGGATGA
TTTGGTTGTATTTGGTAATGTAGTGCTCTGTGGTTCCAGCACTTCTAAAA
TTGTTGATATAGAAGCATTTAAAGGAGTCATCATCTCTGTCGTCTCTGGA
GGTTGCAGGTCCAAAATTGATGATGCATTGATGCTGTTGGAAAGTGTGAA
TTCCCCAATGGACGTTGTTGATGGAGAAATCTCTGGTAAATCAGTTGCAt
taatttcacttttcaaagcGGTTGTGGTTACAGTAGGAGAAACTGCACTT
GTCCCATTCATTATTTCATAACTTGGTAAAATGGTAGTTAAACTGCTTGA
ATCCAGACTAGGTGAAACACTTTGGGTGTTATTCATAATTGAATCCAAGC
TAGATGAGACACTTAGATAACTACTTATCGATTCAGAATTTAGTCTTATA
GATGATCCTGGTGTTGGTAAGACTGAGTTCACTAAATTTGACGTGACAGT
TGAATCATTAGTTATCAATGGTGAAATAGTTTGGGGTTGTATTGAAAAGG
ATGAACTATCTGATAAAGATGTTAGTAAAGTTTGTGACATCTCCATTGAT
ACTGATGATGTTGTGTTTATCTCATTGTTAACATTACGTCTTCTTCGCCT
CTTTGCAATAGCCGAGGATGAGTATATAACTGATTGGTGATCTAACGATG
TTGAAACTGAAACCGATTCAAAATCACCAGCGATAATGGAAGATAAACTA
CTTGATTCCAAAGCTTCATTAGATGAACTTAGTATAGAAGATTCGTTTCC
AAAAATTGATTCAGTTGACATAATTGATGAAGACAATGTATTTAGGACAG
GGTTTTCTCTACTGATGGTTGATCCTATTGATATTGCTACTGGTGATATT
GTTTGTATTGATGTCTCTATAGACAATGATTGTGAAATTGACGACGATGG
ATTTATATCCGATGAATTGTTAAAAATAGAAGATTCATGTCCAACAAAAT
AACTATTCGCAGATGATTGATCCTCTGAAATAAAGTTGGATGTTAGTTCT
ATACTCATGGTTGTGCCATTAGTAATTGATTGAATATCTgcataatttgt
tgaaaaactagactcaATGCTTGTTGGTAACATCGTCCCAGAACTCTCAA
TAGAAGTTTGTATTTGTGAAAAAGTCATGTTTGAATTTATCAGTATTGAT
TGGTTTCCTGTCACTGGAATACTAGAAGCTTCAATTACTGAGGTTGAATT
CACAATCTGTATATTTGACGAATGTATATGAATTGAAGTGGAGAAAGTAG
GAAAGTTATTAATAAGTGATGATGTGGGTGATAAACAAACTTCAGTAATA
GCAGTAACAAAATATGAACAAGATGCTTGTAGAATTTCTGTGcttgatga
aaaaaatcttgataaaaGTGAGCTTTGTACTGAATTTATGACTGTCTCTT
GTGAAGTTAAACTTTTTGATGGTGAAATCCCAGATGTTGGTTGAACTGAT
TCAACTATTGAACTCTCTCCTAAATTCAATTGGCTTGATATTGGAAGGAT
TTGTGAAGATTGTATTATATCACTTTCAATACTTTGGTCAACTCTACTTG
AAGAGGGAATGATGAGAGTTTTTGATTCCATTAACACATCCATTGAATGA
ATTGATTGCGACTCTAGCATACTTGATACAAAAATGTCTGACATAGAAAT
GGAAGTTACTTGTTCTGACACAGAACTTGATGGTAAAGAAAAATTGttca
ttgaatttgaaaatatatctACTAAAGAGCTTGAGTTTGATTGAATAAAA
CTGCTAGCTGAGCTTTGTAATGAAAATGTTTCGATTTTCGAAGTTTGCGT
GCTCTCTTTATTATTGAATTCACTTTCACTGAGAACCAAGCTTTGTGAAA
GGGACAATGTTTTTGATAAAGAAGGCTCAATCATGGACATCAAACTGGCT
GTTAAAGCCTCTGTTATGATAGAAGATGATGATATGTAGTCACTTGCTGT
ATAGAGCTCTATGGAACCAGTTGATGATATTGTCTGAGATATTGATATAG
AAGATTTGTTTGGTATGGTTGATGATGGATCAGAGAAAAATGATGATGCA
TCTTGTGTTGGAAGGATTGTTGATC
Run BLAST on NCBI

transcript from alignment at scaffold_400:132334..135360-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063806 ID=TCONS_00063806|Name=TCONS_00063806|organism=Clytia hemisphaerica|type=transcript|length=3027bp|location=Sequence derived from alignment at scaffold_400:132334..135360- (Clytia hemisphaerica)
CTCAATTGTAATATTGCCAGATGTTGCAGCTCTTCTCTTGCGACGTTGCG CAATATTTTGTGCACGTACATAAGTATCTGCAAGTCTGCGTTCCATTTGA GATTTGAAAGTGTCGGAAGTCACATCCTCTGTTTGATCCCTGACTATGAT GGTGAGCTCAACCAGGGTTTGATTGGTTGTTGGTGCAGTTGTGGGTGTTG GTGGCTGGGTGGTAATTACTGTTGAAGTGGGCGGTTGTAAAGATTGTGTG GCTAACAGTTCTGATGTTTTAAAAGTTTTGGTGGTGGGTGATTGGGATAC TAAAATAAAATGTGTTGTAAATGAAACATAAGAAGGTGCAATAAAAACTG GTGATGTGGTCAATAGTGGTTCTGTTGTGATCGTCATTACTGTAGTGCTT TGGAGTTGTGTCATTGGTGCCAAGTGTGCTGTGCTTAGAGTGTTAATTGT ACTTTGGTTTGTATGTGCAGTAGTTGCGAATGTTATTTCAGTGCTTGAAG CAGTGTTTGTCAAAAGTGTTCTTTCTGTCAATGCTGGAGTAACTGTGCTA ATCTGTAATGTGGAAATTATACCTTTTGTAAAGTCAATTGTAGTCAATGT ATTATAATATGTTGTTAATGATGATGTCAATATAATTTTTGTCACTGTTA ATTCTATTGATTGTAAGGTTGTGTAAATTTCTGTNCATTGTTGTCACTGT TAATTCTATTGATTGTAAGGTCGTGTAAATTTCTGTCATTGTCGTGATCG ATGAAAAATCAGTTGATGTTTTACCTTCACTGGCATATATTGATGTCTTG AGACTTTGACCATGACAAATTGACGTAGTGACATATCTGGTGCAGTATGC AATGTTTGTGGATGATGGAAAGATTTGAGGTGAAGACATTCTGCTGCCTT GTATTGATGGTGAGATCTGTGAAGATGACATTGACTGAAGTGCAAGGGAT GATTTGGTTGTATTTGGTAATGTAGTGCTCTGTGGTTCCAGCACTTCTAA AATTGTTGATATAGAAGCATTTAAAGGAGTCATCATCTCTGTCGTCTCTG GAGGTTGCAGGTCCAAAATTGATGATGCATTGATGCTGTTGGAAAGTGTG AATTCCCCAATGGACGTTGTTGATGGAGAAATCTCTGGTAAATCAGTTGC ATTAATTTCACTTTTCAAAGCGGTTGTGGTTACAGTAGGAGAAACTGCAC TTGTCCCATTCATTATTTCATAACTTGGTAAAATGGTAGTTAAACTGCTT GAATCCAGACTAGGTGAAACACTTTGGGTGTTATTCATAATTGAATCCAA GCTAGATGAGACACTTAGATAACTACTTATCGATTCAGAATTTAGTCTTA TAGATGATCCTGGTGTTGGTAAGACTGAGTTCACTAAATTTGACGTGACA GTTGAATCATTAGTTATCAATGGTGAAATAGTTTGGGGTTGTATTGAAAA GGATGAACTATCTGATAAAGATGTTAGTAAAGTTTGTGACATCTCCATTG ATACTGATGATGTTGTGTTTATCTCATTGTTAACATTACGTCTTCTTCGC CTCTTTGCAATAGCCGAGGATGAGTATATAACTGATTGGTGATCTAACGA TGTTGAAACTGAAACCGATTCAAAATCACCAGCGATAATGGAAGATAAAC TACTTGATTCCAAAGCTTCATTAGATGAACTTAGTATAGAAGATTCGTTT CCAAAAATTGATTCAGTTGACATAATTGATGAAGACAATGTATTTAGGAC AGGGTTTTCTCTACTGATGGTTGATCCTATTGATATTGCTACTGGTGATA TTGTTTGTATTGATGTCTCTATAGACAATGATTGTGAAATTGACGACGAT GGATTTATATCCGATGAATTGTTAAAAATAGAAGATTCATGTCCAACAAA ATAACTATTCGCAGATGATTGATCCTCTGAAATAAAGTTGGATGTTAGTT CTATACTCATGGTTGTGCCATTAGTAATTGATTGAATATCTGCATAATTT GTTGAAAAACTAGACTCAATGCTTGTTGGTAACATCGTCCCAGAACTCTC AATAGAAGTTTGTATTTGTGAAAAAGTCATGTTTGAATTTATCAGTATTG ATTGGTTTCCTGTCACTGGAATACTAGAAGCTTCAATTACTGAGGTTGAA TTCACAATCTGTATATTTGACGAATGTATATGAATTGAAGTGGAGAAAGT AGGAAAGTTATTAATAAGTGATGATGTGGGTGATAAACAAACTTCAGTAA TAGCAGTAACAAAATATGAACAAGATGCTTGTAGAATTTCTGTGCTTGAT GAAAAAAATCTTGATAAAAGTGAGCTTTGTACTGAATTTATGACTGTCTC TTGTGAAGTTAAACTTTTTGATGGTGAAATCCCAGATGTTGGTTGAACTG ATTCAACTATTGAACTCTCTCCTAAATTCAATTGGCTTGATATTGGAAGG ATTTGTGAAGATTGTATTATATCACTTTCAATACTTTGGTCAACTCTACT TGAAGAGGGAATGATGAGAGTTTTTGATTCCATTAACACATCCATTGAAT GAATTGATTGCGACTCTAGCATACTTGATACAAAAATGTCTGACATAGAA ATGGAAGTTACTTGTTCTGACACAGAACTTGATGGTAAAGAAAAATTGTT CATTGAATTTGAAAATATATCTACTAAAGAGCTTGAGTTTGATTGAATAA AACTGCTAGCTGAGCTTTGTAATGAAAATGTTTCGATTTTCGAAGTTTGC GTGCTCTCTTTATTATTGAATTCACTTTCACTGAGAACCAAGCTTTGTGA AAGGGACAATGTTTTTGATAAAGAAGGCTCAATCATGGACATCAAACTGG CTGTTAAAGCCTCTGTTATGATAGAAGATGATGATATGTAGTCACTTGCT GTATAGAGCTCTATGGAACCAGTTGATGATATTGTCTGAGATATTGATAT AGAAGATTTGTTTGGTATGGTTGATGATGGATCAGAGAAAAATGATGATG CATCTTGTGTTGGAAGGATTGTTGATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040000XLOC_040000Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063806-exon-scaffold_400-1575043694:134694..135360TCONS_00063806-exon-scaffold_400-1575043694:134694..135360Clytia hemisphaericaexon
TCONS_00063806-exon-scaffold_400-1575043694:132334..134641TCONS_00063806-exon-scaffold_400-1575043694:132334..134641Clytia hemisphaericaexon
TCONS_00063806-exon-scaffold_400-1510915933:134694..135360TCONS_00063806-exon-scaffold_400-1510915933:134694..135360Clytia hemisphaericaexon
TCONS_00063806-exon-scaffold_400-1510915933:132334..134641TCONS_00063806-exon-scaffold_400-1510915933:132334..134641Clytia hemisphaericaexon
TCONS_00063806-exon-scaffold_400-1491911889:134694..135360TCONS_00063806-exon-scaffold_400-1491911889:134694..135360Clytia hemisphaericaexon
TCONS_00063806-exon-scaffold_400-1491911889:132334..134641TCONS_00063806-exon-scaffold_400-1491911889:132334..134641Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_400supercontigscaffold_400:132334..135360 -
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063806 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top