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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063801 ID=TCONS_00063801|Name=TCONS_00063801|organism=Clytia hemisphaerica|type=transcript|length=141bp
GACGGTTTTAGGCatctcaaaattgacaatttcataatATTGAAGAGGAG
AATGACACAGCAAATATCTATAAAAGGTGATAGACGTCAATAGGAATGAT
CAACATCAAATAGATTTTGCTCAGAAAAGTATACAAACAAG Run BLAST on NCBI transcript from alignment at scaffold_400:246593..249959+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063801 ID=TCONS_00063801|Name=TCONS_00063801|organism=Clytia hemisphaerica|type=transcript|length=3367bp|location=Sequence derived from alignment at scaffold_400:246593..249959+ (Clytia hemisphaerica)
GACGGTTTTAGGCatctcaaaattgacaatttcataatATTGAAGAGGAG
AATGACACAGCAAATATCTATAAAAGTAAGTTTCTCNATTTGTCTCTATT
ACAGATTTTTttagctgggccttcacgcccttgGGCGCCTTGTTCGTTTT
GAAACCTGACCTTGTGACAGATTTGTATGGGAAAGGCAATTGCATacact
ttatttaaaacttttggcTGAAACTCTGAAGCAAGCTTTGAAAATTAAAG
TACTGACTTTCTACCACAACAGTTTTGGAATGTTGTTGATTTCTGGGTGc
tatttttggctgattgtttcatttttcccatgttcaaaatacgaaccgtg
gaaacatactctttcttattcaaataagtaaatgatctgttataatttat
taaacaatcttccTAAAACAATATGTAACACATATTACCAAAGCAACTCG
ATAAACCCTGTGTTGATGAGGCCCTAAAGTTAACAATATACCATATAAAT
CAATTACATCAGTATTTAGCATTCCAATGAAAAGCTTGCAATATtcgagt
ttttatttttgaaagtgatgtctttttctaacttttctagAGAAACTCAC
CCGAAAAAGCCTTTTATTTCTAAAATGGTGCTCCCACATGATGAACCTTG
TTTGCGAATGCATGAATAAACTCTTAAAAACTATGGCAATTTATTTATCC
TAAAATGATTTATCTGTTCTATGTTTATCAAAGACAGTCTGCTTTTCTGG
CTTTTCATCTTAATTTTATTTAGGGTNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATGTTTATCAAAGACAG
TCTGCTTTTCTGGCTTTTCATCTTAATTTTATTTAGGGTGATAAACGTCA
ATAGGAATGATCAACATCAAATAGATTTTGCTCTGAAAAGTATACAAACA
AGGAATGACGATAGTTCATAATAAGACGACCAGCTCCTTTGATACCAGAC
GGTTTTAGGCatctcaaaattgacaatttcataatATTGAAGAGGAGAAT
GACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNTTTGGTTCATTTGGAATATCTCTATCTC
TCCTATTTTTCGTTCGGAACCTGACCCTGTGACAGatttgtatgagaaag
gcaactgcatacactttatttaaaactttAGGCCGAATCTCTAAAGCAAG
ctttaaaaataaatctactGACTTTGTACCACAACAGTTTTGGAATGTTG
TTGATTTCTGGGTGctatttttggctgattgtttcatttttcccatgttc
aaaataCGAACTGTGGAAAAAATACTCTTTCttattcaaataagaaaatg
atccgTTATAAtttattaaacaatcttccaaaaacaataTGTAACACATA
TTACCAAAGCAACTCGGTAAACCCTGTGTCGTTGAGGCCCTGAAGTTAAC
AATATACCATATAAATCAATTACATCAGTATTTAGCATTCCAATGAAAAG
CTTGCAATAttcgagttttcatttttgaaagtgatgtctttttctaactt
ttctagAGAAACTCACCTGAAAAAGCCTTTCATTTGTAAAAACGGTGCTT
CCACATGATGAACCTTGTTTGCGAATGcataaataaacttttaaaaaact
aTGGCAATTTTTTTATCCTAAAAATGATTTATCTGTCTGCTTTTCTGGCT
TTTCTTCAAACACAGTCAGCTTTTCCGgcttttcttcttaattttatttA
GGGTGATAGACGTCAATAGGAATGATCAACATCAAATAGATTTTGCTCAG
AAAAGTATACAAACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063801-exon-scaffold_400-1491911889:246593..246667 | TCONS_00063801-exon-scaffold_400-1491911889:246593..246667 | Clytia hemisphaerica | exon |
| TCONS_00063801-exon-scaffold_400-1510915933:246593..246667 | TCONS_00063801-exon-scaffold_400-1510915933:246593..246667 | Clytia hemisphaerica | exon |
| TCONS_00063801-exon-scaffold_400-1575043694:246593..246667 | TCONS_00063801-exon-scaffold_400-1575043694:246593..246667 | Clytia hemisphaerica | exon |
| TCONS_00063801-exon-scaffold_400-1491911889:249894..249959 | TCONS_00063801-exon-scaffold_400-1491911889:249894..249959 | Clytia hemisphaerica | exon |
| TCONS_00063801-exon-scaffold_400-1510915933:249894..249959 | TCONS_00063801-exon-scaffold_400-1510915933:249894..249959 | Clytia hemisphaerica | exon |
| TCONS_00063801-exon-scaffold_400-1575043694:249894..249959 | TCONS_00063801-exon-scaffold_400-1575043694:249894..249959 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_400 | supercontig | scaffold_400:246593..249959 + |
Blast
The following BLAST results are available for this feature:
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