|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063783 ID=TCONS_00063783|Name=TCONS_00063783|organism=Clytia hemisphaerica|type=transcript|length=158bp
ATCAACATATGAAGAAGTAattgtcaaaattgaaaatgaagaaaataacg
AAGAAATGCCCTATTTCAATTACAAAGAGGATTTGGTGACTGATAAATCA
ACATGTGAAGAAGTAattgtcaaaattgaaaatgaagaaaataacgAAGA
AATGCCCT Run BLAST on NCBI transcript from alignment at scaffold_400:67191..70774+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063783 ID=TCONS_00063783|Name=TCONS_00063783|organism=Clytia hemisphaerica|type=transcript|length=3584bp|location=Sequence derived from alignment at scaffold_400:67191..70774+ (Clytia hemisphaerica)
ATCAACATATGAAGAAGTAattgtcaaaattgaaaatgaagaaaataacg
AAGAAATGCCCTATTTCAATTACAAAGGTAATATAATTCTTGGAACAATA
TTTTATTAACACAACTACCTCAgaactttcttttcaaacccTGCACATTC
TTATTCAAACTTCTTCttgcatttcaagttttaacaTATCTTTTTACACA
CCGCATATATTCTGTTTCCCCTCTCTGTTTAACATGAGTTCTTCAAGTTA
AATGAATGATTATGAAAACTATGAATTATGATTTTTGATATATTGGCATT
ATGAGACATtaataaatttttcacaaatcaATTAAAGGGTCATGAAATAC
GATGTTAGTTAATTAGGGATTTGACTTGCTAGATCTTCATTCCATAATAT
GTGTCCCTGGAATTAAAATTTCAATCCAGAACATTGCTATTCAGACCTCT
CTCCTGCTTagcgtttttttgaaaataattttttaaaagctTATTCCTTT
CCTCGGAGCCTCCTTAAATTGTACCAGCCTTATCTGATCTAGAATAAACC
AGATAAGCTCCTGCTTAAGAGATTAGAAGATGAGAAGGATGAGTTTGTTG
AGTTGTATTAAAAAGTTGTCCACAAACTAataatcagaaagcaaagtaat
aatttcattgtagagcgagtatgagaaataatcttaatgaataaataaac
cagctggaagtttaggtcttctaagtgattacacatgcaatTTCTTGCCT
AAAGTGCTGACCCAACCACCTCCCCCCTCATCCCCgactaaaaagtacaa
aattggATCTAAAGGAGGTAAAcgtttagaagtcaatatttgtaactcca
agttcttataaatttatatttttctaaactaGCCAATAGCCAAACACTGA
TGCGCCCGTTGATTTTATTGTCCGGAccgggagaaaaatagcctaaatta
gaggccaggacttttagctaagcattattctgttgggataatacttggag
gaGACTAggataaatcaaataaaatggtacGATAGTGTGTACATAATTAA
TAGTGgtacagggggggggtcagtgtactagaaggcggcatgtatgtgta
ctacaaggtatttttcaaaacttgacacccacccacccctgaagtacacc
atactacatggaaaaatcccaaaaccaccccataccccctatttactacc
ggttagtacctggaaaaaaaccaaaaccaccccataccccccatTTACTA
CCGGTTACTACCTGGAAAAATCCGGAaaatagagaaacttttttccgaaa
atcggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNAAATCgggaaattgggaaaacttttttccaaaa
atcggaaaaacaggaaaaatgttctcaaaaatccaaaatgcgtgagaaat
caaacttttcaaaaattacatgagaccatgtggaaatgcatgagtctcac
aaccaatgcgtgagagttggcacctctaatgtacgaatgttgaatgttta
aattcaaatgttcgaatgtttacattgactcgataaacctttatttcagt
gggatctggtgggatttcaattcattccaagaagtttggaagaatgatct
tggacaaacttggcttgatcaatttataatagaacaactttacatttcta
ttttagcagataatttctgaacCTTTTATTTCCACACTGTTAtcatcgat
tttggacccaacacctctattttggtacacaggtagtaaaaatcaaaatc
gattttggacccaacaccccaattatagtacacaggtagtacatgacaaa
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNgcccccccccccctgagtggt
atgtttggaaaaaacctgtgtccggtttgaaaaatcttaaaaaggaAAGG
TCACCCCAGTCTttgaaaagtccaaaaaatgatcattttcagccataaca
ctgtctgactgtgaaaatttgtccaatcttgttcaaatttacacaggaaa
tGTGTTTTAGTATCTTTTATTGAATTCCTACAGTGGTATGTTTGGAAAGA
ATCTGTGTTGCCCTCGGAAAATCAAAaagaacggtcgccagccgcgatga
aattacaacaataagtccaaaaatgatcattttcagccataacaatgtct
tgaccgtcgtcgtcggacgagagagaatttaaggctcctaggccggagca
aaaatGTTTAATTATTTTGCTGATTCTAGACCACCTGTTGTTAAGTACCT
TTGAGTAACTATAGTCAGACTATCCGAGatatttttaaagtctttttttt
tagcTCAACCAACCATGCCATTTGAAGATTGGATATTCCAGCCTCGAGTT
ATCCtagtttatttaaaaaatatcccAAATTCAAAAATAGTTGGCAGCCC
ACAAGAAGCTGATCACAAAGTTGAAATACATCTTGAAAGTAGAAAATTCA
GTTGCGTTTATTGTGAGAAAGGATTCAGAACATCAAGTGATTTGAAATCG
CACACTCGAACTCACACTGGTGAAAAACCTTACGAGTGCAATGTTTGTGG
CAAGAAATTCTCTCAATCAAACAGCTTGCGAAAACATCAATTTACCCATA
CTGGCGAGAGACGTTTAAAAAGTGACTTATCTGATAATAGAACATTCGGT
TGCGCTTATTGTGAGAAAGGATTCAGGACATCAAGTGATTTGAAAATACA
TACTCGTACTCACACTGGTGAAAAACCTTATGAATGCAGTGATTGTGAGA
AAGCGTTTTCCTGCTCAAGCAACTTGAAGAAACATCAGTTGACTCACACT
GGTGAAAAACCTTATGAATGCAGTGATTGTGAGAAAGCGTTTTCCTGCTC
AAGCAACTTGAAGAAACATCAGTTGACTCACACTGGTGAAAAACCCTATA
AATGTGATATTTGTGATAAGGGATTTCGTGTATCGAGTACGTTAAAAGTG
CATTTTAGAAAATCTTAGAATTGCCAACGAATAATAGTAAGACCTACcat
attttatcaaataagttttcttttttatttcacaaTGTGTTGACAGTCAC
AAAATTGTTTGTCTGTTAACATCTCTATGAAACATATGTCATTAatttga
aacataaaattttactATCTTATTAACTTTTATTGCCGCCTTTTCTACTT
TAGAGGATTTGGTGACTGATAAATCAACATGTGAAGAAGTAattgtcaaa
attgaaaatgaagaaaataacgAAGAAATGCCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063783-exon-scaffold_400-1491911889:67191..67267 | TCONS_00063783-exon-scaffold_400-1491911889:67191..67267 | Clytia hemisphaerica | exon |
| TCONS_00063783-exon-scaffold_400-1510915933:67191..67267 | TCONS_00063783-exon-scaffold_400-1510915933:67191..67267 | Clytia hemisphaerica | exon |
| TCONS_00063783-exon-scaffold_400-1575043694:67191..67267 | TCONS_00063783-exon-scaffold_400-1575043694:67191..67267 | Clytia hemisphaerica | exon |
| TCONS_00063783-exon-scaffold_400-1491911889:70694..70774 | TCONS_00063783-exon-scaffold_400-1491911889:70694..70774 | Clytia hemisphaerica | exon |
| TCONS_00063783-exon-scaffold_400-1510915933:70694..70774 | TCONS_00063783-exon-scaffold_400-1510915933:70694..70774 | Clytia hemisphaerica | exon |
| TCONS_00063783-exon-scaffold_400-1575043694:70694..70774 | TCONS_00063783-exon-scaffold_400-1575043694:70694..70774 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_400 | supercontig | scaffold_400:67191..70774 + |
Blast
The following BLAST results are available for this feature:
|
