TCONS_00063774 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063774
Unique NameTCONS_00063774
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length335

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063774 ID=TCONS_00063774|Name=TCONS_00063774|organism=Clytia hemisphaerica|type=transcript|length=335bp
CGAGTTGAAAAccttaaaattctaaaataaacttttatttcTGGTGAATA
ATTGGTTCTATATACTGATATGTAATCCGGATTAAcccaaaaatataaaa
cagCAACGGAGCGAAATTGCAGACCATAAAAAAATACTCCCATATCCTCA
TACAGTTTCCAGGGTAGCTAGTGAACGGTGTCTGTATCAGACGACCGTTG
GCGACAGCTACACAGTGGTCATCCAGTTTACCATAGTGGTTTTGATAAAA
CACACCAAATAAACGAAGAAAGTTGCTAGCGCACATGAAAATCGATGGAA
TATGCACAAACAAAATCCTTAAGTGCATTTCGAAT
Run BLAST on NCBI

transcript from alignment at scaffold_40:130194..130528

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063774 ID=TCONS_00063774|Name=TCONS_00063774|organism=Clytia hemisphaerica|type=transcript|length=335bp|location=Sequence derived from alignment at scaffold_40:130194..130528 (Clytia hemisphaerica)
ATTCGAAATGCACTTAAGGATTTTGTTTGTGCATATTCCATCGATTTTCA
TGTGCGCTAGCAACTTTCTTCGTTTATTTGGTGTGTTTTATCAAAACCAC
TATGGTAAACTGGATGACCACTGTGTAGCTGTCGCCAACGGTCGTCTGAT
ACAGACACCGTTCACTAGCTACCCTGGAAACTGTATGAGGATATGGGAGT
ATTTTTTTATGGTCTGCAATTTCGCTCCGTTGctgttttatatttttggg
TTAATCCGGATTACATATCAGTATATAGAACCAATTATTCACCAgaaata
aaagtttattttagaattttaaggTTTTCAACTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039988XLOC_039988Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063774-exon-scaffold_40-1491911889:130194..130528TCONS_00063774-exon-scaffold_40-1491911889:130194..130528Clytia hemisphaericaexon
TCONS_00063774-exon-scaffold_40-1510915933:130194..130528TCONS_00063774-exon-scaffold_40-1510915933:130194..130528Clytia hemisphaericaexon
TCONS_00063774-exon-scaffold_40-1575043694:130194..130528TCONS_00063774-exon-scaffold_40-1575043694:130194..130528Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_40supercontigscaffold_40:130194..130528 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.361996	0.677793	0.949078	0.88169	0	0.937604	0.56178	0.194471	0	0	3.59329	2.16647	0.29931	0.313206	2.99456	3.18686	0.645674	1.46753	0.302304	1.0792	2.70257	6.59259	0.312515	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063774 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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