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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063769 ID=TCONS_00063769|Name=TCONS_00063769|organism=Clytia hemisphaerica|type=transcript|length=5243bp
AACAATGTCGAAAAAATCATGAAACAATTCGAAGATGAATAGTGCGCCGC
ATTTGTATCACAAATTTCGAAGAGGCATCTTGCGACGTTTCAGTTTCGTA
ACCAAAGTATTAAAGTTTTGGTTAAGTCATTAACTCTATACATGACAGAG
AGCGTGGTCTAGTGGTAAGAGAGTCAGATTTCTAATCTCAAGGTCGTGGG
TACGATCCCACTCATGAAATCAAACACCACCGTACAAAAAGAATTCATCG
GAACACTCTAAGCCGTGTGAAGAAATGAATCAGATTGATCGATCAAGTTC
GTCGGCCGGACTTATCAGAAGAAATTGTAGCGAAACCGCGAGTCGTAAAC
AAGAGGAAGGTGAAAAATGCACCGGCCTCTCGTTGCGCATGCCTAATGTC
AATACAGCGAAGTGATTGATCTAGAAACGAATTCCTGGTATCGCAATGAG
TAAACTCTCACGCATATGTAATTTCACAAAAGAATTCACGAACCCCAATA
CCTCATAGACAAGAAATGTGCGATGAAATACAAGACATGTTGCTATATTT
TCTGAGAAAACtatgacaaaaaaatacaaaaaaatattaaaaaaatataa
aggcaCTCTATCCTATCCGCCCTGAGAGGCTACTCGAGCTCTCCAAAAAC
GAAGCGTTTCGAGTAATAGTGAACATTCGCAGACTGAGACAAAGGAAAGG
GAAAGCAGAAATGCCACCGCCATTTTCCCGATGAACTAATACTTGAATAT
GTAAAGTTTGCAAGTCATTATTTTTAGACCcttgtttttacttttcatca
aTGTAGCcgtttaattttcaatatttcatttttgagcAAATTAGCACAAC
ATACGTTACTTTTCATGagatcgatgacgtcattttgacaGCGAAAAAAA
GACTCAAAACCTGAGGACTTttaacattattttttctgaaaatgacgtca
tgaatcgCATAAATTGCCGAATAGCTTGGTTAAGTATTTCAAGAAATTCT
TCGACCTCCAACCTCCGAAATCTTCCGATTCAAagacttttagaaaaaaa
ggatcgttttttgatgatttcgtcTCAGAGATAGCGGGGCCAGGCACACA
GCACTATTTGACTTACAAACCCATTGTTTGGAATTTTCACCAAGATTCGA
ACTTTCTCTTATTCAACTTATCTTATGAAATGTTGGAAGAGACAGCAGTA
CTAATTCTATCACGTGACCATTTACTGTAACTTCACAGAAATTTATTTCC
TTCATCAACTACAAAATCGTTCAAAAGGTTTTTCCGAAGTTTTAGGGTGC
GATTTGATTGAGCGTTTGTGCAGTTTAAATAAGTTTCAGAAAGCGTACTT
TTGGTGATAACATTTCGCGGGGATAGAAAATTTGGTGGGGGTATGAAATG
TGTTTTTCaacatcattttcattttccttttttcatgaTTAATAAAATTT
ATCCCTTTCCCACATTTAAGAGGCATAAAAGCAATTTTTTGCAAATCAAT
TAAACAGCATAAATTTTTGAATGGTGGGATCGGCTTTTGGAATATATATA
CACGGATTGTATTTTTGACGCAAAAACCACTCTAGATCATTTTTTTGAGG
TAAACATGCCGTTTTCACAGCCATTTAAGAAAATAAGCAATTTCccttct
aaataaaaaaatcatctaATTCAGTCTAATTTTATTTCAGTCACAAATCT
TTCTACCGTTAAAAAATGCTGTTTTTAAGGAGTcaaaatacacccccttc
tcacagacccggtgcgATCTTATCACCCAGTAGGGGTAACAATAatggac
caaaactcgatgggggttGATATTCCCGTTTTTTTGATGGATGACAATTT
GAATTTCGTTGTTTTctagtcagaaaattcagtggggttgggaaaaatag
catataATTTTGCAGTGGGGATTTATATATCccattattttcagcgggga
caaaaatcgaagtaaaaatttccacgggagacaatattttggccaatttt
cccagtgggaagggttccaaGCGAGTCTGTGAGAATGAGGtgtcaaaatt
gcttaaatactGTTGAATTTCTTGCGATGAAACAtcgctattcatgatat
tcattacgtaatgttttatagGGAATTAACCCGGTTTTTACCAATTGAGG
CAAATTTGAAAGCCTCCCTAATTGGGCTATCTCCGTAGAAAACATTGCGT
TGTGAATATAGTGAATTGAGTGTTTTCAAATAGATTTTTCCCTTTTAATA
TTTCCAATATAAATTGCATGCACTGACGCAGGATTGAGAGCACCACCCAG
TTTTAACACAGCGAAAAGTATTAAGCAAGCAAGTGATAGaattgactctc
gctaattcgaactcaaatgGGGCATGTAATTTGCTCGAATTTCAGATAAA
TTGGAAAAAAGAGAACATTCTGCGAAAGTTTTTCCCCACAACGGGGACTG
AGAATTACTTAAAAGGATCCATTCAatgtagcgagcacctcactaaaatt
TTTCACCTCGTTTCTTAGAGAGTTctactttgacgatttttgaaaaatag
aagcctttcaagtgttttgatctacccctggacatttcgatttttcaacc
cctggacacgtgttttacccctggacaagcatcaaattGACCCCCTGGGC
ACAAATATTTACACCTGGACATCATattcaccccatggacatggcagttt
ttcagggttttttcaatacccctggacaatatcctccaccccccatgaat
ggtttttttctggaagagcccaatagaCGTTACTGCGCAAATACAAAGCC
GTGatgtctagtataggctacatTCAATGGTGCATATTCATtaatttatg
atatgcaccattgcaatgtcttctgacattaccaTCACGAACCCATTGCA
TTGGTGCATGTCAtgaatagaagttcgaattagcgagagttcacTGTAGT
TGTACAGAGCAGCGGTTTTAAGCGTTCGTCACATGGAAAGTTGTTATGTA
TTACAAAGGGCTTCGAAAATGGGATATTTTTCTACATAGTCcgggttttt
ttaagaataaataAAAGACCAGTTTaagttttggtgtttttcggTGACTT
TTTCTGCTAACAGAAACATCGTTTTGAGGTTCATCTGGCGTCGATGATGC
catctttcaaatttcaaaaatattcaattatGAGAGTATTGGACTGTTCC
GTTAAATAACCATACAGAGTGGTGGACGAACCTTTGCAAGTCAAAATAAA
ACtcttggaaatgtgtggataccccttGGAATATGGCAAAATTAGCAAAG
ATTTCCTGGAAAAATTATATCCTTAAAGTGAgaaatttagaatatttttt
taccccttggaaaaatgaaaaaacactccCTGGATTACCCCCAGGTCTTA
GCTTTCTACGTAGTAGCTTCCTCCGTTTCGGACGTAAAACTCTCCGGATG
AAACAGTAAATCCGTCAACTTCTTAAACAATGGGCAAAAATGTGGGTTAT
GCGAATAGGGtaatttgttgatattttagCTTCATTGACCTTGAATTGAT
AACATTTCCAGAAAATAGAGGGGTTTGCCGGGGAGCAAATTATGTTTAAA
TTTGAAGGGGAAGCAATCAACTGGGACATAAAGACGTGAAGGCATTAGGT
AAAATTCGTGATTAAGCGCTTAATTGACCACGTAAAGTGCTCTGTACAAC
CTATCAGGCCGTTAGGATAGAGAGAACACCTTTTTCGCGATAATGGAGAA
AGCTAACTTTtaggtaaatttttttttagcgaTAATGAAGTTTGATGAAG
GAAATAAACACCTGTGCATAAAGTAAATGGTCACAGAGAAAGTTCAAACG
TCGGTGAAAATTTCCATCCAATGGATTTGTATTCAATATGTACATCCTCG
CCCCGGTCCCATCACAAAATCATCAGAAACAGACCCTTTCTTAAAGTTTC
TGAACCTTAAGATTTCGGAGGAAGATTCACGAAAGAAAATTCCCAAAATA
CCGTCCGAGCTATTCAGCTAAGTAACGTTTGTTGCACTCCCTTAACAGAC
AAAACTTCCAccccaaaaactttttttggccAGGAAATCCATATACAGAA
TTtcgaagaaaataatttttcgagttttgcCTGTCAAgggtttttggtca
aaatagaaATTTGAGGTCTAAATGGCTACTGGAtgaaagcaaaaacaaaa
cctaaaaaataataGTCTGCAAAATATTCAAGTATTAACCATCGAGGAAA
TGGCGAGTGACACTTCTATCATTTCCCTTCCCTTGTATACCCAGCCCATC
TAGAATGTCACTAGGATCAATATAGCTTCATAATCAGAGCAGTTCTTTCA
CCTCTCTTTGGCAGATAGGATAGAGTGCCTTGTTGACAAAAATATAAAGG
TTGCTTGATTTCTTTACTCCTTATGGAAGGGCTTTTCCAGACcgagaaaa
tgagaaaaatatcaaagaaaaaaacattggcctgtttcattttatatcca
tacatgggGTGAGTTGATGGCCTTTTTCAAGCCAAAAAGGTTTAtaagat
tgggctcttccaCAAAATGTTCGTAGGATATAGTGTCCGCCGGggttagt
gaaaaatctacaaaaattgcCTTGTCCGgaggtaaacttgctctgtttga
ggggtATTTAGAATGTtgagggggtcaactgatgcttgtccggagGGGCA
AAagaaagtcacaatgtccggagGGTAGATGtccaaaaattgttataatc
ctccacccccaatttccaaattttttcttgaaaaacccATTGTGTTATCT
ACTGGAAAAACGACACAACTCGCAAATATCTGAAAGAAGGTTTTAGTGTC
CTTGAAAAACTTTTATACCGCAAAGTAAGGATGGGCAAACTGAAGTCAAT
TAGCGCTTGGAAATTTCAGAATAATGTTCAACCCCCATGAAAGAAATTAG
GTCCCTGGAAATTCCAAAACTTTTCGTTGAAAACATGGAAATAATATAAA
CATGTATGGATATAAATGGAATGGGCCTTTGCAACTCTCATTAGTTGTGA
AACACTCGGTAAAAACAATTctgacaaaaaaagaaattgtggCAGTGAAA
AGTTAGATTTCAGGAAAAGCCCCTTCCAGGCCACACAAAGAATTATTTAC
ACCGGTCAAAACACTATTTGTAAAATATGATTAAAGCGAAATCCTTCAAA
GTCACCTTGCAAACAAAATATTGTTTTGAACTAGTATTTAAAG Run BLAST on NCBI transcript from alignment at scaffold_40:86316..91558 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063769 ID=TCONS_00063769|Name=TCONS_00063769|organism=Clytia hemisphaerica|type=transcript|length=5243bp|location=Sequence derived from alignment at scaffold_40:86316..91558 (Clytia hemisphaerica)
CTTTAAATACTAGTTCAAAACAATATTTTGTTTGCAAGGTGACTTTGAAG
GATTTCGCTTTAATCATATTTTACAAATAGTGTTTTGACCGGTGTAAATA
ATTCTTTGTGTGGCCTGGAAGGGGCTTTTCCTGAAATCTAACTTTTCACT
GccacaatttctttttttgtcagAATTGTTTTTACCGAGTGTTTCACAAC
TAATGAGAGTTGCAAAGGCCCATTCCATTTATATCCATACATGTTTATAT
TATTTCCATGTTTTCAACGAAAAGTTTTGGAATTTCCAGGGACCTAATTT
CTTTCATGGGGGTTGAACATTATTCTGAAATTTCCAAGCGCTAATTGACT
TCAGTTTGCCCATCCTTACTTTGCGGTATAAAAGTTTTTCAAGGACACTA
AAACCTTCTTTCAGATATTTGCGAGTTGTGTCGTTTTTCCAGTAGATAAC
ACAATgggtttttcaagaaaaaatttggaaattgggggtggaggattata
acaatttttggaCATCTACCctccggacattgtgactttctTTTGCCCct
ccggacaagcatcagttgaccccctcaACATTCTAAATacccctcaaaca
gagcaagtttacctcCGGACAAGgcaatttttgtagatttttcactaacc
CCGGCGGACACTATATCCTACGAACATTTTGtggaagagcccaatcttaT
AAACCTTTTTGGCTTGAAAAAGGCCATCAACTCACcccatgtatggatat
aaaatgaaacaggccaatgtttttttctttgatatttttctcattttctc
gGTCTGGAAAAGCCCTTCCATAAGGAGTAAAGAAATCAAGCAACCTTTAT
ATTTTTGTCAACAAGGCACTCTATCCTATCTGCCAAAGAGAGGTGAAAGA
ACTGCTCTGATTATGAAGCTATATTGATCCTAGTGACATTCTAGATGGGC
TGGGTATACAAGGGAAGGGAAATGATAGAAGTGTCACTCGCCATTTCCTC
GATGGTTAATACTTGAATATTTTGCAGACtattattttttaggttttgtt
tttgctttcaTCCAGTAGCCATTTAGACCTCAAATttctattttgaccaa
aaacccTTGACAGgcaaaactcgaaaaattattttcttcgaAATTCTGTA
TATGGATTTCCTggccaaaaaaagtttttggggTGGAAGTTTTGTCTGTT
AAGGGAGTGCAACAAACGTTACTTAGCTGAATAGCTCGGACGGTATTTTG
GGAATTTTCTTTCGTGAATCTTCCTCCGAAATCTTAAGGTTCAGAAACTT
TAAGAAAGGGTCTGTTTCTGATGATTTTGTGATGGGACCGGGGCGAGGAT
GTACATATTGAATACAAATCCATTGGATGGAAATTTTCACCGACGTTTGA
ACTTTCTCTGTGACCATTTACTTTATGCACAGGTGTTTATTTCCTTCATC
AAACTTCATTAtcgctaaaaaaaaatttacctaAAAGTTAGCTTTCTCCA
TTATCGCGAAAAAGGTGTTCTCTCTATCCTAACGGCCTGATAGGTTGTAC
AGAGCACTTTACGTGGTCAATTAAGCGCTTAATCACGAATTTTACCTAAT
GCCTTCACGTCTTTATGTCCCAGTTGATTGCTTCCCCTTCAAATTTAAAC
ATAATTTGCTCCCCGGCAAACCCCTCTATTTTCTGGAAATGTTATCAATT
CAAGGTCAATGAAGctaaaatatcaacaaattaCCCTATTCGCATAACCC
ACATTTTTGCCCATTGTTTAAGAAGTTGACGGATTTACTGTTTCATCCGG
AGAGTTTTACGTCCGAAACGGAGGAAGCTACTACGTAGAAAGCTAAGACC
TGGGGGTAATCCAGggagtgttttttcatttttccaaggggtaaaaaaat
attctaaatttcTCACTTTAAGGATATAATTTTTCCAGGAAATCTTTGCT
AATTTTGCCATATTCCaaggggtatccacacatttccaagaGTTTTATTT
TGACTTGCAAAGGTTCGTCCACCACTCTGTATGGTTATTTAACGGAACAG
TCCAATACTCTCataattgaatatttttgaaatttgaaagatgGCATCAT
CGACGCCAGATGAACCTCAAAACGATGTTTCTGTTAGCAGAAAAAGTCAc
cgaaaaacaccaaaacttAAACTGGTCTTTtatttattcttaaaaaaacc
cgGACTATGTAGAAAAATATCCCATTTTCGAAGCCCTTTGTAATACATAA
CAACTTTCCATGTGACGAACGCTTAAAACCGCTGCTCTGTACAACTACAg
tgaactctcgctaattcgaacttctattcaTGACATGCACCAATGCAATG
GGTTCGTGAtggtaatgtcagaagacattgcaatggtgcatatcataaat
taATGAATATGCACCATTGAatgtagcctatactagacatCACGGCTTTG
TATTTGCGCAGTAACGtctattgggctcttccagaaaaaaaccattcatg
gggggtggaggatattgtccaggggtattgaaaaaaccctgaaaaactgc
catgtccatggggtgaatATGATGTCCAGGTGTAAATATTTGTGCCCAGG
GGGTCaatttgatgcttgtccaggggtaaaacacgtgtccaggggttgaa
aaatcgaaatgtccaggggtagatcaaaacacttgaaaggcttctatttt
tcaaaaatcgtcaaagtagAACTCTCTAAGAAACGAGGTGAAAaatttta
gtgaggtgctcgctacatTGAATGGATCCTTTTAAGTAATTCTCAGTCCC
CGTTGTGGGGAAAAACTTTCGCAGAATGTTCTCTTTTTTCCAATTTATCT
GAAATTCGAGCAAATTACATGCCCcatttgagttcgaattagcgagagtc
aattCTATCACTTGCTTGCTTAATACTTTTCGCTGTGTTAAAACTGGGTG
GTGCTCTCAATCCTGCGTCAGTGCATGCAATTTATATTGGAAATATTAAA
AGGGAAAAATCTATTTGAAAACACTCAATTCACTATATTCACAACGCAAT
GTTTTCTACGGAGATAGCCCAATTAGGGAGGCTTTCAAATTTGCCTCAAT
TGGTAAAAACCGGGTTAATTCCctataaaacattacgtaatgaatatcat
gaatagcgaTGTTTCATCGCAAGAAATTCAACagtatttaagcaattttg
acaCCTCATTCTCACAGACTCGCttggaacccttcccactgggaaaattg
gccaaaatattgtctcccgtggaaatttttacttcgatttttgtccccgc
tgaaaataatggGATATATAAATCCCCACTGCAAAATtatatgctatttt
tcccaaccccactgaattttctgactagAAAACAACGAAATTCAAATTGT
CATCCATCAAAAAAACGGGAATATCaacccccatcgagttttggtccatT
ATTGTTACCCCTACTGGGTGATAAGATcgcaccgggtctgtgagaagggg
gtgtattttgACTCCTTAAAAACAGCATTTTTTAACGGTAGAAAGATTTG
TGACTGAAATAAAATTAGACTGAATtagatgatttttttatttagaaggG
AAATTGCTTATTTTCTTAAATGGCTGTGAAAACGGCATGTTTACCTCAAA
AAAATGATCTAGAGTGGTTTTTGCGTCAAAAATACAATCCGTGTATATAT
ATTCCAAAAGCCGATCCCACCATTCAAAAATTTATGCTGTTTAATTGATT
TGCAAAAAATTGCTTTTATGCCTCTTAAATGTGGGAAAGGGATAAATTTT
ATTAAtcatgaaaaaaggaaaatgaaaatgatgttGAAAAACACATTTCA
TACCCCCACCAAATTTTCTATCCCCGCGAAATGTTATCACCAAAAGTACG
CTTTCTGAAACTTATTTAAACTGCACAAACGCTCAATCAAATCGCACCCT
AAAACTTCGGAAAAACCTTTTGAACGATTTTGTAGTTGATGAAGGAAATA
AATTTCTGTGAAGTTACAGTAAATGGTCACGTGATAGAATTAGTACTGCT
GTCTCTTCCAACATTTCATAAGATAAGTTGAATAAGAGAAAGTTCGAATC
TTGGTGAAAATTCCAAACAATGGGTTTGTAAGTCAAATAGTGCTGTGTGC
CTGGCCCCGCTATCTCTGAgacgaaatcatcaaaaaacgatccttttttt
ctaaaagtctTTGAATCGGAAGATTTCGGAGGTTGGAGGTCGAAGAATTT
CTTGAAATACTTAACCAAGCTATTCGGCAATTTATGcgattcatgacgtc
attttcagaaaaaataatgttaaAAGTCCTCAGGTTTTGAGTCTTTTTTT
CGCtgtcaaaatgacgtcatcgatctCATGAAAAGTAACGTATGTTGTGC
TAATTTgctcaaaaatgaaatattgaaaattaaacgGCTACAttgatgaa
aagtaaaaacaagGGTCTAAAAATAATGACTTGCAAACTTTACATATTCA
AGTATTAGTTCATCGGGAAAATGGCGGTGGCATTTCTGCTTTCCCTTTCC
TTTGTCTCAGTCTGCGAATGTTCACTATTACTCGAAACGCTTCGTTTTTG
GAGAGCTCGAGTAGCCTCTCAGGGCGGATAGGATAGAGtgcctttatatt
tttttaatatttttttgtatttttttgtcataGTTTTCTCAGAAAATATA
GCAACATGTCTTGTATTTCATCGCACATTTCTTGTCTATGAGGTATTGGG
GTTCGTGAATTCTTTTGTGAAATTACATATGCGTGAGAGTTTACTCATTG
CGATACCAGGAATTCGTTTCTAGATCAATCACTTCGCTGTATTGACATTA
GGCATGCGCAACGAGAGGCCGGTGCATTTTTCACCTTCCTCTTGTTTACG
ACTCGCGGTTTCGCTACAATTTCTTCTGATAAGTCCGGCCGACGAACTTG
ATCGATCAATCTGATTCATTTCTTCACACGGCTTAGAGTGTTCCGATGAA
TTCTTTTTGTACGGTGGTGTTTGATTTCATGAGTGGGATCGTACCCACGA
CCTTGAGATTAGAAATCTGACTCTCTTACCACTAGACCACGCTCTCTGTC
ATGTATAGAGTTAATGACTTAACCAAAACTTTAATACTTTGGTTACGAAA
CTGAAACGTCGCAAGATGCCTCTTCGAAATTTGTGATACAAATGCGGCGC
ACTATTCATCTTCGAATTGTTTCATGATTTTTTCGACATTGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063769-exon-scaffold_40-1491911889:86316..91558 | TCONS_00063769-exon-scaffold_40-1491911889:86316..91558 | Clytia hemisphaerica | exon |
| TCONS_00063769-exon-scaffold_40-1510915933:86316..91558 | TCONS_00063769-exon-scaffold_40-1510915933:86316..91558 | Clytia hemisphaerica | exon |
| TCONS_00063769-exon-scaffold_40-1575043694:86316..91558 | TCONS_00063769-exon-scaffold_40-1575043694:86316..91558 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_40 | supercontig | scaffold_40:86316..91558 . |
Blast
The following BLAST results are available for this feature:
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