TCONS_00063766 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063766
Unique NameTCONS_00063766
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length582

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063766 ID=TCONS_00063766|Name=TCONS_00063766|organism=Clytia hemisphaerica|type=transcript|length=582bp
TAATGAATGTTTTATCATACAGAAAATTAACCTTCAATATCGTCCGTTTA
CGGTCTGTTGAAATATCGGTAAACTCGACTTCGACCAATACAAAGGCCAA
TTCTTTAGAGAGAATAACATTAGATGATACAGCAAACGGAAATTTGAACG
CCGATTCATCAGATCAGGAGACAATTTATAAAAGTGTTTGTTGCTGCAAT
AATAAAAATGAGCAGCTTGGTGAAGAAACATCTTCAAATAAGGCAGTCCA
AAATGGCGATTCAAAAGACCCAACCAAAGAGATCTCAAATCTTAAtgata
aaagaacaaaaaataggAGCTTGTCCTGGCAAAATGGAGATTTATCATCC
AATAAAAAGAATTTGGAACCGTATAAGAAATGTCGTTCCAATGTAAGTGT
TTCAGCAAAGAATAACGACATGTTCAACAACCAGagtcaaaagaacaaaa
aatatgCTGTAGTCACTCTTATTATGATTACAGTATCGTATGTCCTATGC
AACGTATTCATGATACCACCGATTATTGATCAACTTGACTGGCTTGGTAC
ATCAACGTTTTACCAAGGGATTGACTTACAAG
Run BLAST on NCBI

protein sequence of TCONS_00063766-protein

>TCONS_00063766-protein ID=TCONS_00063766-protein|Name=TCONS_00063766-protein|organism=Clytia hemisphaerica|type=polypeptide|length=193bp
MNVLSYRKLTFNIVRLRSVEISVNSTSTNTKANSLERITLDDTANGNLNA
DSSDQETIYKSVCCCNNKNEQLGEETSSNKAVQNGDSKDPTKEISNLNDK
RTKNRSLSWQNGDLSSNKKNLEPYKKCRSNVSVSAKNNDMFNNQSQKNKK
YAVVTLIMITVSYVLCNVFMIPPIIDQLDWLGTSTFYQGIDLQ
Run BLAST on NCBI

transcript from alignment at scaffold_40:13995..14576

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063766 ID=TCONS_00063766|Name=TCONS_00063766|organism=Clytia hemisphaerica|type=transcript|length=582bp|location=Sequence derived from alignment at scaffold_40:13995..14576 (Clytia hemisphaerica)
CTTGTAAGTCAATCCCTTGGTAAAACGTTGATGTACCAAGCCAGTCAAGT
TGATCAATAATCGGTGGTATCATGAATACGTTGCATAGGACATACGATAC
TGTAATCATAATAAGAGTGACTACAGcatattttttgttcttttgactCT
GGTTGTTGAACATGTCGTTATTCTTTGCTGAAACACTTACATTGGAACGA
CATTTCTTATACGGTTCCAAATTCTTTTTATTGGATGATAAATCTCCATT
TTGCCAGGACAAGCTcctattttttgttcttttatcaTTAAGATTTGAGA
TCTCTTTGGTTGGGTCTTTTGAATCGCCATTTTGGACTGCCTTATTTGAA
GATGTTTCTTCACCAAGCTGCTCATTTTTATTATTGCAGCAACAAACACT
TTTATAAATTGTCTCCTGATCTGATGAATCGGCGTTCAAATTTCCGTTTG
CTGTATCATCTAATGTTATTCTCTCTAAAGAATTGGCCTTTGTATTGGTC
GAAGTCGAGTTTACCGATATTTCAACAGACCGTAAACGGACGATATTGAA
GGTTAATTTTCTGTATGATAAAACATTCATTA

Coding sequence (CDS) from alignment at scaffold_40:13995..14576

>TCONS_00063766 ID=TCONS_00063766|Name=TCONS_00063766|organism=Clytia hemisphaerica|type=CDS|length=579bp|location=Sequence derived from alignment at scaffold_40:13995..14576 (Clytia hemisphaerica)
TTGTAAGTCAATCCCTTGGTAAAACGTTGATGTACCAAGCCAGTCAAGTT
GATCAATAATCGGTGGTATCATGAATACGTTGCATAGGACATACGATACT
GTAATCATAATAAGAGTGACTACAGcatattttttgttcttttgactCTG
GTTGTTGAACATGTCGTTATTCTTTGCTGAAACACTTACATTGGAACGAC
ATTTCTTATACGGTTCCAAATTCTTTTTATTGGATGATAAATCTCCATTT
TGCCAGGACAAGCTcctattttttgttcttttatcaTTAAGATTTGAGAT
CTCTTTGGTTGGGTCTTTTGAATCGCCATTTTGGACTGCCTTATTTGAAG
ATGTTTCTTCACCAAGCTGCTCATTTTTATTATTGCAGCAACAAACACTT
TTATAAATTGTCTCCTGATCTGATGAATCGGCGTTCAAATTTCCGTTTGC
TGTATCATCTAATGTTATTCTCTCTAAAGAATTGGCCTTTGTATTGGTCG
AAGTCGAGTTTACCGATATTTCAACAGACCGTAAACGGACGATATTGAAG
GTTAATTTTCTGTATGATAAAACATTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039980XLOC_039980Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063766-proteinTCONS_00063766-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063766-exon-scaffold_40-1491911889:13995..14576TCONS_00063766-exon-scaffold_40-1491911889:13995..14576Clytia hemisphaericaexon
TCONS_00063766-exon-scaffold_40-1510915933:13995..14576TCONS_00063766-exon-scaffold_40-1510915933:13995..14576Clytia hemisphaericaexon
TCONS_00063766-exon-scaffold_40-1575043694:13995..14576TCONS_00063766-exon-scaffold_40-1575043694:13995..14576Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_40supercontigscaffold_40:13995..14576 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.24457	0	0	0	0	0	0.126515	0	0	0	0	0.0731849	1.1122	1.05803	0.0919622	0.403703	0	0.0991482	0	0	0	0	0.21114	0.107559
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063766 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top