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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063759 ID=TCONS_00063759|Name=TCONS_00063759|organism=Clytia hemisphaerica|type=transcript|length=3804bpRun BLAST on NCBI protein sequence of TCONS_00063759-protein >TCONS_00063759-protein ID=TCONS_00063759-protein|Name=TCONS_00063759-protein|organism=Clytia hemisphaerica|type=polypeptide|length=778bp MLAYQISRDPIVKQTVRQIFYDKAKIQISPTKKGKKEIDDFHAAAPFKYLRun BLAST on NCBI transcript from alignment at scaffold_40:30066..46507- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00063759 ID=TCONS_00063759|Name=TCONS_00063759|organism=Clytia hemisphaerica|type=transcript|length=16442bp|location=Sequence derived from alignment at scaffold_40:30066..46507- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_40:30066..46507- >TCONS_00063759 ID=TCONS_00063759|Name=TCONS_00063759|organism=Clytia hemisphaerica|type=CDS|length=35055bp|location=Sequence derived from alignment at scaffold_40:30066..46507- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00063759 vs. Swiss-Prot (Human)
Match: SPT6H (Transcription elongation factor SPT6 OS=Homo sapiens GN=SUPT6H PE=1 SV=2) HSP 1 Score: 784.637 bits (2025), Expect = 0.000e+0 Identity = 397/782 (50.77%), Postives = 561/782 (71.74%), Query Frame = 1
Query: 247 RHMLAYQISRDPIVKQTVRQIFYDKAKIQISPTKKGKKEIDDFHAAAPFKYLRNKPVRDLSGEQFFKMCHAEQEKLVKIKIAIDADLPNGA---QSYLDEIKQLFYRDEYSNLVQEWNKQRCQVLDIALNKMLYPQXXXXXXXXXXXXXVDFTLMTCGLKLRNWISVRPYQADSSYKEGGHENVESEHTCCPVLSCSFTVDKESASYFAMIDADGQMVDFLRLKHLLWRRNSRKENERKAKEKDMEILKNFILRHQPRAVAISAETRESTSVMEDISRAITELEQEQSMSTIYVELVDAEVARLYQDSPRGRAEFPDYPPLLRHAISIARRLQDPLEEFANLCETEDELLCLRFHQLQEYLPRDRLAKRMQIEFINVVNEVGVDINRALEFTHSTILTHFLCGLGPRKANHLMKTIRQNGGRLDNRSQLVTVCEMGLQVFLNCAGFIRIEPSEAND--DRY-EVLDGTRIHPETYDWPRKMAVDSADDNDVPE--NPTMAVEEVMTDPGRLKDLDLDAFAEELARQGYGNKQITLYDIRDELSYRFKDHRPPFRGLGFQEKFELLTGETQQTLYYGKLITCLATGFAFKKATRDELDSANPTRNDETNLWKCPFCLKDTFLDLSEVWTHFDNGSCPGQAVGVRTRLDNGISGFISNKNISDKGXXXXXXXXXXGMTLHARVIKINYERFQVDLTCKSSELADAQGKFASPKDLYYXXXXXXXXXXXXXXXXXXXXXRTTYLKRVIAHPSFKNVTFKDAEKLLDTMTQGDCIVRPSSKGCDHF 2568
R+M+A QI+R+P+V+Q +RQ F ++AK+ I+PTKKG+K++D+ H A FKYL+NKPV++L +QF K+C AE E L+ I+ID G Q+Y +EIKQ +YRDE+S+ VQEWN+QR ++ AL + LY Q++KELK+KLL E+ ++ + C KL NW+ V PY+ D +E E++ VL +F+ ++ + A+++ +G++ DFLRL H RR + +E ER+ K +D+E LK F+L +P V ++ E R++ ++ED+ R + EL+Q Q +S+I VELVD E+A LY +S + AEF DYPP+LR A+S+ARR+QDPL EFA +C +++++LCL+FH LQE++ ++ L + EFIN VNEVGVD+NRA+ +S L ++CGLGPRK HL+K ++QN RL++R+QLVT+C MG +VF+NCAGF++I+ + D D Y EVLDG+R+HPETY+W RKMAVD+ + ++ E NP A+EE++ +P RLKDLDLDAFAEEL RQGYG+K ITLYDIR ELS R+KD R +R +E F +LT ET +T Y GKLI C TG A ++ + D A RNDET LW+CPFC +D F +LSEVW HFD+GSCPGQA+GV+TRLDNG++GFI K +SDK V+RPEERV+VGMT+H R++KI+ E+F DLTC++S+L D ++ PKD YY +A+ ++E + + +RTTY+KRVIAHPSF N+ FK AEK+++TM QGD I+RPSSKG +H
Sbjct: 589 RYMVALQIAREPLVRQVLRQTFQERAKLNITPTKKGRKDVDEAHYAYSFKYLKNKPVKELRDDQFLKICLAEDEGLLTTDISIDLKGVEGYGNDQTYFEEIKQFYYRDEFSHQVQEWNRQRTMAIERALQQFLYVQMAKELKNKLLAEAKEYVIKACSRKLYNWLRVAPYRPDQQVEEDDDFMDENQGKGIRVLGIAFSSARDHPVFCALVNGEGEVTDFLRLPHFTKRRTAWREEEREKKAQDIETLKKFLLNKKPHVVTVAGENRDAQMLIEDVKRIVHELDQGQQLSSIGVELVDNELAILYMNSKKSEAEFRDYPPVLRQAVSLARRIQDPLIEFAQVCSSDEDILCLKFHPLQEHVVKEELLNALYCEFINRVNEVGVDVNRAIAHPYSQALIQYVCGLGPRKGTHLLKILKQNNTRLESRTQLVTMCHMGPKVFMNCAGFLKIDTASLGDSTDSYIEVLDGSRVHPETYEWARKMAVDALEYDESAEDANPAGALEEILENPERLKDLDLDAFAEELERQGYGDKHITLYDIRAELSCRYKDLRTAYRSPNTEEIFNMLTKETPETFYIGKLIICNVTGIAHRRPQGESYDQA--IRNDETGLWQCPFCQQDNFPELSEVWNHFDSGSCPGQAIGVKTRLDNGVTGFIPTKFLSDKVVKRPEERVKVGMTVHCRIMKIDIEKFSADLTCRTSDLMDRNNEWKLPKDTYY-DFDAEAADHKQEEDMKRKQQRTTYIKRVIAHPSFHNINFKQAEKMMETMDQGDVIIRPSSKGENHL 1367 HSP 2 Score: 222.631 bits (566), Expect = 0.000e+0 Identity = 110/232 (47.41%), Postives = 154/232 (66.38%), Query Frame = 2
Query: 2567 LTGTWKIKDNIYQHIDVREDGKENDFSIGKSLWIDNEEYEDLDEIMARHISPLAAHAREIITHKYYKE-SDGTKAKLEEILMMEKRKAPGRIPYFFSCSKQFPGKFMLGYMPRKKPRVEYVAITPDGFRYRGRVHGTINNLLKWFKEHFRDPVPGAGAPGSRRQQYGQTPLSMGGGSVSGNTPYTPSATPS--NLLDDSEA-NSLMQQYQFGDSRVTPAYSTSGFTPSDTPS 3250
LT TWK+ D IYQH+DVRE+GKEN FS+G +LWI++EE+EDLDEI+AR++ P+A+ AR+++ HKYY++ S G + KLEE+L+ K++ P IPYF K+ PGKF+LGY PR KPR+EYV +TP+GFRYRG++ T+N L +WFK+H++DPVPG S R + TP + +ATP+ NL D + A N+L Q A + G P+ TP+
Sbjct: 1367 LTVTWKVSDGIYQHVDVREEGKENAFSLGATLWINSEEFEDLDEIVARYVQPMASFARDLLNHKYYQDCSGGDRKKLEELLIKTKKEKPTFIPYFICACKELPGKFLLGYQPRGKPRIEYVTVTPEGFRYRGQIFPTVNGLFRWFKDHYQDPVPGITPSSSSRTR----------------TPASINATPANINLADLTRAVNALPQNMTSQMFSAIAAVTGQGQNPNATPA 1582 HSP 3 Score: 65.855 bits (159), Expect = 0.000e+0 Identity = 30/47 (63.83%), Postives = 34/47 (72.34%), Query Frame = 2
Query: 107 RRDLYTICKDNDLLQMASYFGLTTEQFAENLRDNYQRHETEQHAXPP 247
RRD+YTIC+ L +A FGLT EQF ENLRD+YQRHETEQ P
Sbjct: 520 RRDMYTICQSAGLDGLAKKFGLTPEQFGENLRDSYQRHETEQFPAEP 566 The following BLAST results are available for this feature:
BLAST of TCONS_00063759 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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