TCONS_00063751 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00063751
Unique Name	TCONS_00063751
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	604

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_40:47780..52318+

transcript sequence

>TCONS_00063751 ID=TCONS_00063751|Name=TCONS_00063751|organism=Clytia hemisphaerica|type=transcript|length=604bp
TAAAAAGCCACAAGTGAAAGGAACACACTCCCACACGCATGAGTTTTATA
CTGCTTTTGTTGAACAATGAAAACATaattatcatattttttccTTTTGC
ACATGCGGTATAAAAGAGAGATACAAATGACACTCCCATATGGATAAGAT
ACTTGACGAGAGAGCAGGATCAAATCATATTCGTTACAGAGGAATTCAAA
ACTCAACCCCATTGAAACAACCAACATCCAAAATGGCGAAGAATTGTTCA
AACGCGTCCGCAACCGCAAGCGGATTCATGCCAGGCTTCCGTGTCTGGAC
ACTGAAGGCTTTCGATGAGAGGGGACAATGTATTGTTGAAGTTTCACAAG
ACATGGGCAGcaataataaaaaatacaaacacTTCTGCGAACAAATCGCC
GCTAAGGGATACCAATTAACCGCCAGCCAAGCGGCAGAATTGAGCAGCAC
CCTTTATCTCAATATAAATTGGGACAACAGTAATGTTTCCTTCAAACAGT
ACATGCAAATGATATAAATCATTTCATAATATGGTCATGTATTTTAAGTT
ATATGTTATGATATTATCTTTGCAAAATTACTTTCTTATTATGACAAAGT
TTTT

Run BLAST on NCBI

transcript from alignment at scaffold_40:47780..52318+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00063751 ID=TCONS_00063751|Name=TCONS_00063751|organism=Clytia hemisphaerica|type=transcript|length=4539bp|location=Sequence derived from alignment at scaffold_40:47780..52318+ (Clytia hemisphaerica)
TAAAAAGCCACAAGTGAAAGGAACACACTCCCACACGCATGAGTTTTATA
CTGCTTTTGTTGAACAATGAAAACATaattatcatattttttccTTTTGC
ACATGCGGTATAAAAGAGAGATACAAATGACACTCCCATATGGATAAGAT
ACTTGACGAGAGAGCAGGATCAAATCATATTCGTTACAGAGGTAAAATTC
TCCTTTTCTCTTCTAAGagcaactttataagaataatgaggctcaaaaac
aaccgaaaaataagaacaatctaaGAACAAGCTGGGTTGTCTGAATATGA
AGCAAGTAAATGGTCGAAGTAGTAAAAATAGGATATAAAgattaaaataa
cttaaatttttgcaaagaaataagaacagccgagcctaaaaaatttactg
gttcttacaaaaaaggTTTAATTGTTTAATTGTAATTAGTAATAACAACT
AATTTGCGCTCTCAAAAATCCATTTGGTGCATAACCTCAATTTGACCAGG
TCTGTAACCTCTAGGCTTTTTGTATTAAGAACGTATTCTAGTGAAAAAGA
GACGAACTTTAGACGGAAAGTTTAAAAGCTCTCTCTTCTACATTTTAGGA
ATTCAAAACTCAACCCCATTGANTTTCATAAACCTTATtagcccttttta
caccggcccttatggGTGTTAATTCTTCGTcgctggcgtaataagggccg
tcACGTCATAAAAAGGGCCGGCGAGGTAGTTATTTTCGgcactttttttc
taaaaagaaacaCCTTCGTAAAACCAATTAGATGATAAGCatgcaaaaaa
ctttataaggGAATTTGATGTTAGTTTACACGCATTAATCGTTATCTTTG
GAATCGTCAGgatgtattaaaaaaaaaagcaatgtaccttattacacgaa
tattactaggcaaatattcaacggccttgagattaacacgcaaaaaatta
acacgaactttatttgctttttcaaggacaccacggctggttttaataaA
GGGGAGTTTTTATAACCACGAAATTGTTCAATTGCAGTAaaattcgtgta
ataaggtaactTGTAGCTCACTGTGTTAAGACCTTGTATCTTATTGTTGA
AAATCTTGTAATCTTTGACTTAAAGTCACATGAAGTCCACGAAAATTGCC
ACATTCATGCAGAGCTTAATAGCAAGATCTAACCGAGTTTCTGTGGAGCA
AAGAATTTTGTAGTAATTTTTGTCACAGTTAAAAAATGAATCTAAATCAA
GCTTAACTCCGTTATAAATCAAATGGATTTAATATGGTGGGTATTGTCAG
AAGCTCCGCTCATATTGGTTAACTATTAAAACTTTCGCTCTATTTTCTCG
GTGGTCTTGCAATTGCTAAACATAATAAAATCTCATGAATCGTCCAATTA
AGCTCCTGGAGTGGATTAAGGTTATGGTTTTAAATAGAAGTATGANNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNcgctggcgtaataagggccgtcACGTCATAAA
AAGGGCCGGCGAGGTAGTTATTTTCGgcactttttttctaaaaagaaaca
CCTTCGTAAAACCAATTAGATGATAAGCatgcaaaaaactttataaggGA
ATTTGATGTTAGTTTACACGCATTAATCGTTATCTTTGGAATCGTCAGga
tgtattaaaaaaaaaagcaatgtaccttattacacgaatattactaggca
aatattcaacggccttgagattaacacgcaaaaaattaacacgaacttta
tttgctttttcaaggacaccacggctggttttaataaAGGGGAGTTTTTA
TAACCACGAAATTGTTCAATTGCAGTAaaattcgtgtaataaggtaactT
GTAGCTCACTGTGTTAAGACCTTGTATCTTATTGTTGAAAATCTTGTAAT
CTTTGACTTAAAGTCACATGAAGTCCACGAAAATTGCCACATTCATGCAG
AGCTTAATAGCAAGATCTAACCGAGTTTCTGTGGAGCAAAGAATTTTGTA
GTAATTTTTGTCACAGTTAAAAAATGAATCTAAATCAAGCTTAACTCCGT
TATAAATCAAATGGATTTAATATGGTGGGTATTGTCAGAAGCTCCGCTCG
TATTGGTTAACTATTAAAACTTTCGCTCTATTTTCTCGGTGGTCTTGCAA
TTGCTAAACATAATAAAATCTCATGAATCGTCCAATTAAGCTCCTGGAGT
GGATTAAGGTTATGGTTTTAAATAGAAGTATGATTACTGCTTGGTCcgta
taataaaaaaacaaaacaaaacaaatactATATTTTGTATTGATAGCTTA
GTATTGAAAGACTTAGAATTCTTTTAGCGTATTTATTAATCTATAAACAT
ATCTACGGAGGAGTTATTCAAGCGTCCATAAAAAGCCACAAGTGAAAGGA
ACACACTCCCACACGCATGAGTTTTATACTGCTTTTGTTGAACAATGAAA
ACATaattatcatattttttccTTTTGCACATGCGGTATAAAAGAGAGAT
ACAAATGACACTCCCATATGGATAAGATACTTGACGAGAGAGCAGGATCA
AATCATATTCGTTACAGAGGTAAAATTCTCCTTTTCTCTTCTAAGagcaa
ctttataagaataatgaggctcaaaaacaaccgaaaaataagaacaatct
aaGAACAAGCTGGGTTGTCTGAATATGAAGCAAGTAAATGGTCGAAGTAG
TAAAAATAGGATATAAAgattaaaataacttaaatttttgcaaagaaata
agaacagccgagcctaaaaaatttactggttcttacaaaaaaggTTTAAT
TGTTTAATTGTAATTAGTAATAACAACTAATTTGCGCTCTCAAAAATCCA
TTTGGTGCATAACCTCAATTTGACCAGGTCTGTAACCTCTAGGCTTTTTG
TATTAAGAACGTATTCTAGTGAAAAAGAGACGAACTTTAGACGGAAAGTT
TAAAAGCTCTCTCTTCTACATTTTAGGAATTCAAAACTCAACCCCATTGA
AACAACCAACATCCAAAATGGCGAAGAATTGTTCAAACGCGTCCGCAACC
GCAAGCGGATTCATGCCAGGCTTCCGTGTCTGGACACTGAAGGCTTTCGA
TGAGAGGGGACAATGTATTGTTGAAGTTTCACAAGACATGGGCAGcaata
ataaaaaatacaaacacTTCTGCGAACAAATCGCCGCTAAGGGATACCAA
TTAACCGCCAGCCAAGCGGCAGAATTGAGCAGCACCCTTTATCTCAATAT
AAATTGGGACAACAGTAATGTTTCCTTCAAACAGTACATGCAAATGATAT
AAATCATTTCATAATATGGTCATGTATTTTAAGTTATATGTTATGATATT
ATCTTTGCAAAATTACTTTCTTATTATGACAAAGTTTTT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_039973	XLOC_039973	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00063751-exon-scaffold_40-1491911889:47780..47970	TCONS_00063751-exon-scaffold_40-1491911889:47780..47970	Clytia hemisphaerica	exon
TCONS_00063751-exon-scaffold_40-1510915933:47780..47970	TCONS_00063751-exon-scaffold_40-1510915933:47780..47970	Clytia hemisphaerica	exon
TCONS_00063751-exon-scaffold_40-1575043694:47780..47970	TCONS_00063751-exon-scaffold_40-1575043694:47780..47970	Clytia hemisphaerica	exon
TCONS_00063751-exon-scaffold_40-1491911889:51906..52318	TCONS_00063751-exon-scaffold_40-1491911889:51906..52318	Clytia hemisphaerica	exon
TCONS_00063751-exon-scaffold_40-1510915933:51906..52318	TCONS_00063751-exon-scaffold_40-1510915933:51906..52318	Clytia hemisphaerica	exon
TCONS_00063751-exon-scaffold_40-1575043694:51906..52318	TCONS_00063751-exon-scaffold_40-1575043694:51906..52318	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_40	supercontig	scaffold_40:47780..52318 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	1.72882	1.2934	0	0	0.760204	1.06754	0	0.308596	0	0	0	0	0	0	138.048	176.299	0	0	548.259	461.365	75.2544	153.168	710.078	783.589	0	0	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00063751 vs. Swiss-Prot (Human)

BLAST of TCONS_00063751 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00063751 (transcript) - C. hemisphaerica