TCONS_00063741 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063741
Unique NameTCONS_00063741
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length392

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063741 ID=TCONS_00063741|Name=TCONS_00063741|organism=Clytia hemisphaerica|type=transcript|length=392bp
tttttttatttgttcatttaattttattttctcaacaATTGAATAAAGAT
TTAATCACATTTACAAACAAGCGATGGACAATTTCCCATACGGCAGTTAC
TCTCACACCATTTATGCATATTTGGTCTAGTAGCCCATCGACCAATAGCT
CTGCATTTACCACCATTACCACCGCCATTTGTTGGGCGGGGAGTTTCAGG
GCGCGGGCGTTCAGTGCGTAATGGTTTTGTAGTTGGAGGAACTGGTCCAG
GTGTATTTGGTTTTGGTGGAACGTAACCACCTAAAGCCTTAGCAACAGCT
GTGATGAGTGGATATTTTCCTTGGTTACAATGGCGACCGTTGAAATCATC
GAGATCCAAACACCAAAACATGGCTCCCATCAATCCCTTGGC
Run BLAST on NCBI

protein sequence of TCONS_00063741-protein

>TCONS_00063741-protein ID=TCONS_00063741-protein|Name=TCONS_00063741-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
AKGLMGAMFWCLDLDDFNGRHCNQGKYPLITAVAKALGGYVPPKPNTPGP
VPPTTKPLRTERPRPETPRPTNGGGNGGKCRAIGRWATRPNMHKWCESNC
RMGNCPSLVCKCD
Run BLAST on NCBI

transcript from alignment at scaffold_4:16405..16796

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063741 ID=TCONS_00063741|Name=TCONS_00063741|organism=Clytia hemisphaerica|type=transcript|length=392bp|location=Sequence derived from alignment at scaffold_4:16405..16796 (Clytia hemisphaerica)
GCCAAGGGATTGATGGGAGCCATGTTTTGGTGTTTGGATCTCGATGATTT
CAACGGTCGCCATTGTAACCAAGGAAAATATCCACTCATCACAGCTGTTG
CTAAGGCTTTAGGTGGTTACGTTCCACCAAAACCAAATACACCTGGACCA
GTTCCTCCAACTACAAAACCATTACGCACTGAACGCCCGCGCCCTGAAAC
TCCCCGCCCAACAAATGGCGGTGGTAATGGTGGTAAATGCAGAGCTATTG
GTCGATGGGCTACTAGACCAAATATGCATAAATGGTGTGAGAGTAACTGC
CGTATGGGAAATTGTCCATCGCTTGTTTGTAAATGTGATTAAATCTTTAT
TCAATtgttgagaaaataaaattaaatgaacaaataaaaaaa

Coding sequence (CDS) from alignment at scaffold_4:16405..16796

>TCONS_00063741 ID=TCONS_00063741|Name=TCONS_00063741|organism=Clytia hemisphaerica|type=CDS|length=342bp|location=Sequence derived from alignment at scaffold_4:16405..16796 (Clytia hemisphaerica)
GCCAAGGGATTGATGGGAGCCATGTTTTGGTGTTTGGATCTCGATGATTT
CAACGGTCGCCATTGTAACCAAGGAAAATATCCACTCATCACAGCTGTTG
CTAAGGCTTTAGGTGGTTACGTTCCACCAAAACCAAATACACCTGGACCA
GTTCCTCCAACTACAAAACCATTACGCACTGAACGCCCGCGCCCTGAAAC
TCCCCGCCCAACAAATGGCGGTGGTAATGGTGGTAAATGCAGAGCTATTG
GTCGATGGGCTACTAGACCAAATATGCATAAATGGTGTGAGAGTAACTGC
CGTATGGGAAATTGTCCATCGCTTGTTTGTAAATGTGATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039963XLOC_039963Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063741-exon-scaffold_4-1491911889:16405..16796TCONS_00063741-exon-scaffold_4-1491911889:16405..16796Clytia hemisphaericaexon
TCONS_00063741-exon-scaffold_4-1510915933:16405..16796TCONS_00063741-exon-scaffold_4-1510915933:16405..16796Clytia hemisphaericaexon
TCONS_00063741-exon-scaffold_4-1575043694:16405..16796TCONS_00063741-exon-scaffold_4-1575043694:16405..16796Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063741-proteinTCONS_00063741-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:16405..16796 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.751707	0.219507	0.429506	0.261441	0.413189	1.04518	0.233342	0	0.361576	1.18037	0.472309	120.095	100.562	27.9843	60.2431	52.753	56.9544	1026.66	1119.96	289.623	311.1	868.276	717.677	1239.56	1447.08	0.0143321	1.58481	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR017853Glycoside_hydrolase_SF
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063741 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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