|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063725 ID=TCONS_00063725|Name=TCONS_00063725|organism=Clytia hemisphaerica|type=transcript|length=1643bp
CCAAAGAAAAGATATCAGTTTCTGTGGATGTCTTAGAGCCAGGAATGTTT
CTCAATTCATAAGCCAGATATTGATGACGTATGTTGTATCGCTTTTGCTG
CTTTTCGGTCAAAGTGTAACGTTCAGGATTATTTCTGCTAGTAGCTTTCC
CAAAGTCAATAATCACTGGTATCAAATTAGATCGCAATAAAATGTTATTG
CTTTTCAAATCattgtgcaaaatatttttgcgatGGAGAAAAATTAGTGC
CTCAATTAGTTGAAAGCAAACCATATTCCATTCCTGTTGTAGAATCAGAT
CATttcttttagcttggaaaattgtcattggTTGGGTGTTAAAAAGCACA
TATTCCATGACTAGTTGGTGTTGGAANGAGAATTAGATCATttcttttag
cttggaaaattgtcattggTTTGGTGTTAAAAAGCACATATTCCATGAGT
AGTTTGTGttgaaaaattccaaataaatgTGGGAAAAACTTTGATCCTTG
AATTTTAAATAGAAATGTGGCCTCATGCTTAGCATCAAAATTATCTACTG
ACTTTCCAGATTTGACAGCACATTGAATATGTAAGTAGGTCATTTTACCT
ATTCTGACAACTCCAAATGCTCCCTCACCAATAACCTGATCAGTGATTTC
AAGGGTTTGATCCGTCAATTCaacttgttttaatttttcacaagctcttt
tttccaaaacacgTTTCTTTGAAACAGTACTCAAATAATTTGATTTGTca
catttttccattttttctaaTTGAATTTGAGATGAGTGGAGATCTGATTT
CATTTTCTGATTCTCTGCTTTAATTGCTtcattttcaagtttgaacTCTT
CATTTATCTCTGTTACACTAGTAAGTTCTTCCTtgattttcttattctca
gAGTTAAGTGTTTCCTTTTCAAGTTTAACTTCTTTAGTTTCTTCCTTTGC
ATCATGCAGttctttctttgtctttttgctCTTTTCCTTAgcatgtgttt
tttttcttaaactttCGCTTGAGTTGACCCTCTTCACTTCTtgccatttt
ttctttttttttcaatgggtAAAGgtgtttaaaaaattaatttcagagaa
agTTGATTGAAAAGATTTAGGAATCAATGATTTaacccaaaaaaatttcc
aaaatctaGACAGTAATTAATTACGCCAAAGTAgctaatttgaaaaagaa
aacctcAAAATAAGTAATCCTAGCCAtcaatatttaaattttcaaataaa
attaacaatatCACGTTTGCAAATTTGTGatgaaaaaattcccaaaataa
tctttaaaattgtcaaaaagaCCTGTAAAAACTTTGCCATCGAAATGACC
ATGCCTTTTCAAGCCACCAAGGTGACCAAGAACCACTacgtaattaaaaa
aaaaagaaaaaaaaccttttaggAATTagcttttgaaaattctaaaacta
ATATGTACCTCcgaaaactttgaaatattacgtaaagctagccatcgaaa
tgaccatgcctattcGAGCAACCAAGGTGACCAAGAACCACTAcgtaatt
aaaaaagaaaaaaaaccttttaggaattaacttttgaaaattctaaaacc
aATATGTACCTCcgaaaactttgaaatattaCGTAAAGCTAGC Run BLAST on NCBI protein sequence of TCONS_00063725-protein >TCONS_00063725-protein ID=TCONS_00063725-protein|Name=TCONS_00063725-protein|organism=Clytia hemisphaerica|type=polypeptide|length=154bp
MKSDLHSSQIQLEKMEKCDKSNYLSTVSKKRVLEKRACEKLKQVELTDQT
LEITDQVIGEGAFGVVRIGKMTYLHIQCAVKSGKSVDNFDAKHEATFLFK
IQGSKFFPHLFGIFQHKLLMEYVLFNTKPMTIFQAKRNDLILXPTPTSHG
ICAF Run BLAST on NCBI transcript from alignment at scaffold_399:70358..72000 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063725 ID=TCONS_00063725|Name=TCONS_00063725|organism=Clytia hemisphaerica|type=transcript|length=1643bp|location=Sequence derived from alignment at scaffold_399:70358..72000 (Clytia hemisphaerica)
GCTAGCTTTACGtaatatttcaaagttttcgGAGGTACATATtggtttta
gaattttcaaaagttaattcctaaaaggttttttttcttttttaattacg
TAGTGGTTCTTGGTCACCTTGGTTGCTCgaataggcatggtcatttcgat
ggctagctttacgtaatatttcaaagttttcgGAGGTACATATtagtttt
agaattttcaaaagctAATTcctaaaaggttttttttcttttttttttaa
ttacgtAGTGGTTCTTGGTCACCTTGGTGGCTTGAAAAGGCATGGTCATT
TCGATGGCAAAGTTTTTACAGGtctttttgacaattttaaagattatttt
gggaattttttcatCACAAATTTGCAAACGTGatattgttaattttattt
gaaaatttaaatattgaTGGCTAGGATTACTTATTTTgaggttttctttt
tcaaattagcTACTTTGGCGTAATTAATTACTGTCtagattttggaaatt
tttttgggttAAATCATTGATTCCTAAATCTTTTCAATCAActttctctg
aaattaattttttaaacacCTTTacccattgaaaaaaaaagaaaaaatgg
caAGAAGTGAAGAGGGTCAACTCAAGCGaaagtttaagaaaaaaaacaca
tgcTAAGGAAAAGagcaaaaagacaaagaaagaaCTGCATGATGCAAAGG
AAGAAACTAAAGAAGTTAAACTTGAAAAGGAAACACTTAACTctgagaat
aagaaaatcaAGGAAGAACTTACTAGTGTAACAGAGATAAATGAAGAgtt
caaacttgaaaatgaAGCAATTAAAGCAGAGAATCAGAAAATGAAATCAG
ATCTCCACTCATCTCAAATTCAAttagaaaaaatggaaaaatgtgACAAA
TCAAATTATTTGAGTACTGTTTCAAAGAAAcgtgttttggaaaaaagagc
ttgtgaaaaattaaaacaagttGAATTGACGGATCAAACCCTTGAAATCA
CTGATCAGGTTATTGGTGAGGGAGCATTTGGAGTTGTCAGAATAGGTAAA
ATGACCTACTTACATATTCAATGTGCTGTCAAATCTGGAAAGTCAGTAGA
TAATTTTGATGCTAAGCATGAGGCCACATTTCTATTTAAAATTCAAGGAT
CAAAGTTTTTCCCAcatttatttggaatttttcaaCACAAACTACTCATG
GAATATGTGCTTTTTAACACCAAAccaatgacaattttccaagctaaaag
aaATGATCTAATTCTCNTTCCAACACCAACTAGTCATGGAATATGTGCTT
TTTAACACCCAAccaatgacaattttccaagctaaaagaaATGATCTGAT
TCTACAACAGGAATGGAATATGGTTTGCTTTCAACTAATTGAGGCACTAA
TTTTTCTCCatcgcaaaaatattttgcacaatGATTTGAAAAGCAATAAC
ATTTTATTGCGATCTAATTTGATACCAGTGATTATTGACTTTGGGAAAGC
TACTAGCAGAAATAATCCTGAACGTTACACTTTGACCGAAAAGCAGCAAA
AGCGATACAACATACGTCATCAATATCTGGCTTATGAATTGAGAAACATT
CCTGGCTCTAAGACATCCACAGAAACTGATATCTTTTCTTTGG Coding sequence (CDS) from alignment at scaffold_399:70358..72000 >TCONS_00063725 ID=TCONS_00063725|Name=TCONS_00063725|organism=Clytia hemisphaerica|type=CDS|length=465bp|location=Sequence derived from alignment at scaffold_399:70358..72000 (Clytia hemisphaerica)
ATGAAATCAGATCTCCACTCATCTCAAATTCAAttagaaaaaatggaaaa
atgtgACAAATCAAATTATTTGAGTACTGTTTCAAAGAAAcgtgttttgg
aaaaaagagcttgtgaaaaattaaaacaagttGAATTGACGGATCAAACC
CTTGAAATCACTGATCAGGTTATTGGTGAGGGAGCATTTGGAGTTGTCAG
AATAGGTAAAATGACCTACTTACATATTCAATGTGCTGTCAAATCTGGAA
AGTCAGTAGATAATTTTGATGCTAAGCATGAGGCCACATTTCTATTTAAA
ATTCAAGGATCAAAGTTTTTCCCAcatttatttggaatttttcaaCACAA
ACTACTCATGGAATATGTGCTTTTTAACACCAAAccaatgacaattttcc
aagctaaaagaaATGATCTAATTCTCNTTCCAACACCAACTAGTCATGGA
ATATGTGCTTTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063725-exon-scaffold_399-1491911889:70358..72000 | TCONS_00063725-exon-scaffold_399-1491911889:70358..72000 | Clytia hemisphaerica | exon |
| TCONS_00063725-exon-scaffold_399-1510915933:70358..72000 | TCONS_00063725-exon-scaffold_399-1510915933:70358..72000 | Clytia hemisphaerica | exon |
| TCONS_00063725-exon-scaffold_399-1575043694:70358..72000 | TCONS_00063725-exon-scaffold_399-1575043694:70358..72000 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_399 | supercontig | scaffold_399:70358..72000 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR011009 | Kinase-like_dom |
Blast
The following BLAST results are available for this feature:
|
