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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063717 ID=TCONS_00063717|Name=TCONS_00063717|organism=Clytia hemisphaerica|type=transcript|length=1625bp
NAGGCTATCCTTTGCAAATGAAGTTGTCAGAGAACATAATGGGAAAATGT
TGGATTCTTTACAATCACCCATTGCAGTCATTAAAGCAAAAAATACTCCA
CCAAGTGTGTCAAAATCATCCTCGGAAGAATTTGGTTTAGCAAATGAAGT
TTTCCTTGCCAAAGGTGCCAAAGTAATGCTTACAAGAAACTTGTGGTCAG
ATGTGGGACTTTGTAACGGAAGTTTAGGCATTGTCAAAGACATAATATAT
CAAAGAAACCACTTGCCACCTGCGCTTCCTATAGCTGTTATAGTAAAATT
TGATAGATGTACAGGGCCAAGTTTTTTTGATGACGAGGATAATTGTGTTC
CAATTGTGCCTATTATAGAAACTTCATCTGAAGATAACGTACAGAAAGAA
AGAATGCAAATACCTTTGAAACTTGCATGGTCGATAACTATTCATAAATC
TCAAGGTCTTACATTGGATAAAGTTGTAGTGGATTTGGGAAAGAAAGAAA
GCATGGATGGTTTAACCTATGTTGCATTATCACGTGTGAAAAAGCTAAAT
GACATGGTAATTGAATCATTTCCATTCGAAAGAATCAATAAATTGAGCGA
CGGTAAAAGATTCAAATTTAGAGTACGCGAAGAAAGCAGACTAGAAGAAT
TAGCAGCACGAAACAAGCCTTAGAAGTAATTAGATGGAATAATTTAGTAT
ATGTCATGTCAAAATCATTGCACGGGGGGGGGCTCAGGGCAGGGAAGGGT
ATTTTGCAAAAagtaatattttcttttcttttctcctttattttCTCTTC
CTTTGAAATACATTCTTATCCAACGAGTGAAATTATTTAGtacttttttt
catgaaaaaattgatgaatttaAGATAAGAAAGATTGCAAATACGGTCCA
ACTACAGAATGTCCTATGAAAAATTCCCCAGAACAATACAGTAGATgaaa
acattcttttgttttaagaggAATTTTTCATGGGATACTCTGTACTTTAA
ATATCTTGATCATGAGTAGAAGCCTTGCCTAGACTTTTCAAATCcttaca
tttttttaatatatttttatccTAATTTAtagaatattatattgttttgt
aatacatgaatttttttattatctttaTAATACATTTGAagaatattata
tttttatacagaattattgaaattacgtattatttatgattttgtacaaa
ttttatttgattgattgaattTACATTTATTACTTCCAAATTCCAATTTG
ATTACAATAATGTGAATGTGAATTGATGTTTAATCTTTACCACAGaacaa
taatgaacaatgataaaaatgataatagtagaacaatgaatgaatatgga
caaaagtgattatttttgGTGGTTAAATTGGCAACAAAATTCCGCTGTAA
TTAAATAATTCAACAATCGTCTTTCAGCATACTCTACTCCCAACAACAAT
GCTTAAAAAGCCTGTATTATGGAACTTTGACACTTATCTTATGAAAGAGG
ATTCATTTACTTTGACAACGtaatattgcctcgttactgctacgattacc
acgttacgtcatcattttccatccttctacacgatattgctgttacaact
gcaagataactggcatatcaATTTT Run BLAST on NCBI protein sequence of TCONS_00063717-protein >TCONS_00063717-protein ID=TCONS_00063717-protein|Name=TCONS_00063717-protein|organism=Clytia hemisphaerica|type=polypeptide|length=223bp
RLSFANEVVREHNGKMLDSLQSPIAVIKAKNTPPSVSKSSSEEFGLANEV
FLAKGAKVMLTRNLWSDVGLCNGSLGIVKDIIYQRNHLPPALPIAVIVKF
DRCTGPSFFDDEDNCVPIVPIIETSSEDNVQKERMQIPLKLAWSITIHKS
QGLTLDKVVVDLGKKESMDGLTYVALSRVKKLNDMVIESFPFERINKLSD
GKRFKFRVREESRLEELAARNKP Run BLAST on NCBI transcript from alignment at scaffold_399:120813..122639- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063717 ID=TCONS_00063717|Name=TCONS_00063717|organism=Clytia hemisphaerica|type=transcript|length=1827bp|location=Sequence derived from alignment at scaffold_399:120813..122639- (Clytia hemisphaerica)
NAGGCTATCCTTTGCAAATGAAGTTGTCAGAGAACATAATGGGAAAATGT
TGGATTCTTTACAATCACCCATTGCAGTCATTAAAGCAAAAAATACTCCA
CCAAGTGTGTCAAAATCATCCTCGGAAGAATTTGGTTTAGCAAATGAAGT
TTTCCTTGCCAAAGGTGCCAAAGTAATGCTTACAAGAAACTTGTGGTCAG
ATGTGGGACTTTGTAACGGAAGTTTAGGCATTGTCAAAGACATAATATAT
CAAAGAAACCACTTGCCACCTGCGCTTCCTATAGCTGTTATAGTAAAATT
TGATAGATGTACAGGGCCAAGTTTTTTTGATGACGAGGATAATTGTGTTC
CAATTGTGCCTATTATAGAAACTTCATCTGAAGATAACGTACAGAAAGAA
AGAATGCAAATACCTTTGAAACTTGCATGGTCGATAACTATTCATAAATC
TCAAGGTCTTACATTGGATAAAGTTGTAGTGGATTTGGGAAAGAAAGAAA
GCATGGATGGTTTAACCTATGTTGCATTATCACGTGTGAAAAAGCTAAAT
GACATGGTAATTGAATCATTTCCATTCGAAAGAATCAATAAATTGAGCGA
CGGTAAAAGATTCAAATTTAGAGTACGCGAAGAAAGCAGACTAGAAGAAT
TAGCAGCACGAAACAAGCCTTAGAAGTAATTAGATGGAATAATTTAGTAT
ATGTCATGTCAAAATCATTGCACGGGGGGGGGCTCAGGGCAGGGAAGGGT
ATTTTGCAAAAAGTAATATTTTCTTTTCTTTTCTCCTTTATTTTCTCTTC
CTTTGAAATACATTCTTATCCAACGAGTGAAATTATTTAGTACTTTTTTT
CATGAAAAAATTGATGAATTTAAGATAAGAAAGATTGCAAATACGGTCCA
ACTACAGAATGTCCTATGAAAAATTCCCCAGAACAATACAGTAGATGAAA
ACATTCTTTTGTTTTAAGAGGAATTTTTCATGGGATACTCTGTACTTTAA
ATATCTTGATCATGAGTAGAAGCCTTGCCTAGACTTTTCAAATCCTTACA
TTTTTTTAATATATTTTTATCCTAATTTATAGAATATTATATTGTTTTGT
AATACATGAATTTTTTTATTATCTTTATAATACATTTGAAGAATATTATA
TTTTTATACAGAATTATTGAAATTACGTATTATTTATGATTTTGTACAAA
TTTTATTTGATTGATTGAATTTACATTTATTACTTCCAAATTCCAATTTG
ATTACAATAATGTGAATGTGAATTGATGTTTAATCTTTACCACAGAACAA
TAATGAACAATGATAAAAATGATAATAGTAGAACAATGAATGAATATGGA
CAAAAGTGATTATTTTTGGTGGTTAAATTGGCAACAAAATTCCGCTGTAA
TTAAATAATTCAACAATCGTCTTTCAGCATACTCTACTCCCAACAACAAT
GCTTAAAAAGCCTGTATTATGGAACTTTGACAGTAAGTACAAATAATTTT
TTCATTATGTACTTTTATAGGACTTTGTTTTATTAATCTTTTATGTTTAA
CCTGTGTTCTTAACCAGGCACTATTTGGGAAATTAATATCAAAAATTGAA
AGAAACTTGTAAACTATTTTGAGGAAATTTTAGTACACTCACCATATTAT
CATCTAATTTCATGTTTCTTATTTTCCTTTTAAGCTTATCTTATGAAAGA
GGATTCATTTACTTTGACAACGTAATATTGCCTCGTTACTGCTACGATTA
CCACGTTACGTCATCATTTTCCATCCTTCTACACGATATTGCTGTTACAA
CTGCAAGATAACTGGCATATCAATTTT Coding sequence (CDS) from alignment at scaffold_399:120813..122639- >TCONS_00063717 ID=TCONS_00063717|Name=TCONS_00063717|organism=Clytia hemisphaerica|type=CDS|length=672bp|location=Sequence derived from alignment at scaffold_399:120813..122639- (Clytia hemisphaerica)
AGGCTATCCTTTGCAAATGAAGTTGTCAGAGAACATAATGGGAAAATGTT
GGATTCTTTACAATCACCCATTGCAGTCATTAAAGCAAAAAATACTCCAC
CAAGTGTGTCAAAATCATCCTCGGAAGAATTTGGTTTAGCAAATGAAGTT
TTCCTTGCCAAAGGTGCCAAAGTAATGCTTACAAGAAACTTGTGGTCAGA
TGTGGGACTTTGTAACGGAAGTTTAGGCATTGTCAAAGACATAATATATC
AAAGAAACCACTTGCCACCTGCGCTTCCTATAGCTGTTATAGTAAAATTT
GATAGATGTACAGGGCCAAGTTTTTTTGATGACGAGGATAATTGTGTTCC
AATTGTGCCTATTATAGAAACTTCATCTGAAGATAACGTACAGAAAGAAA
GAATGCAAATACCTTTGAAACTTGCATGGTCGATAACTATTCATAAATCT
CAAGGTCTTACATTGGATAAAGTTGTAGTGGATTTGGGAAAGAAAGAAAG
CATGGATGGTTTAACCTATGTTGCATTATCACGTGTGAAAAAGCTAAATG
ACATGGTAATTGAATCATTTCCATTCGAAAGAATCAATAAATTGAGCGAC
GGTAAAAGATTCAAATTTAGAGTACGCGAAGAAAGCAGACTAGAAGAATT
AGCAGCACGAAACAAGCCTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063717-exon-scaffold_399-1575043694:121158..122639 | TCONS_00063717-exon-scaffold_399-1575043694:121158..122639 | Clytia hemisphaerica | exon |
| TCONS_00063717-exon-scaffold_399-1575043694:120813..120955 | TCONS_00063717-exon-scaffold_399-1575043694:120813..120955 | Clytia hemisphaerica | exon |
| TCONS_00063717-exon-scaffold_399-1510915933:121158..122639 | TCONS_00063717-exon-scaffold_399-1510915933:121158..122639 | Clytia hemisphaerica | exon |
| TCONS_00063717-exon-scaffold_399-1510915933:120813..120955 | TCONS_00063717-exon-scaffold_399-1510915933:120813..120955 | Clytia hemisphaerica | exon |
| TCONS_00063717-exon-scaffold_399-1491911889:121158..122639 | TCONS_00063717-exon-scaffold_399-1491911889:121158..122639 | Clytia hemisphaerica | exon |
| TCONS_00063717-exon-scaffold_399-1491911889:120813..120955 | TCONS_00063717-exon-scaffold_399-1491911889:120813..120955 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_399 | supercontig | scaffold_399:120813..122639 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004386 | helicase activity |
| GO:0005524 | ATP binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005524 |
ATP binding |
| molecular_function |
GO:0004386 |
helicase activity |
Blast
The following BLAST results are available for this feature:
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