TCONS_00063705 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063705
Unique NameTCONS_00063705
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length411

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063705 ID=TCONS_00063705|Name=TCONS_00063705|organism=Clytia hemisphaerica|type=transcript|length=411bp
TTCGGTTTTAACATCAAATAAACTTCTTGGATCTTTTTCACGCAAATCAG
AACAAACAACAAATTCACCAAGCTTCGTCAAATTTTGCTTCACGACGGAA
AAGCCTCTTTTTATaacttttgtaatgaaatccaTCCGAGACAGAATAAC
AATATTGTACAGAAAGCTCTCTTATTTGTCCTTAGTTTGGACCTGTAGCT
TTTAACATCAATTGAATTTCCTGAATCGCGTCACTGTCGACGTACGTCCT
CCAGCGGAGAAAATTGGGATGGTTCGGGTCAAGGTACATACAATCATTTA
ACCAGAACGGACCGTGACCGCGTGTAATACAAGACGATCCGTAACTTCGA
TCATATGTATGGAATTTCTTTCCGTTCAGGTTTTGTGGACCCGTCAAAGA
TTCTATCCCGG
Run BLAST on NCBI

transcript from alignment at scaffold_398:177844..178254

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063705 ID=TCONS_00063705|Name=TCONS_00063705|organism=Clytia hemisphaerica|type=transcript|length=411bp|location=Sequence derived from alignment at scaffold_398:177844..178254 (Clytia hemisphaerica)
CCGGGATAGAATCTTTGACGGGTCCACAAAACCTGAACGGAAAGAAATTC
CATACATATGATCGAAGTTACGGATCGTCTTGTATTACACGCGGTCACGG
TCCGTTCTGGTTAAATGATTGTATGTACCTTGACCCGAACCATCCCAATT
TTCTCCGCTGGAGGACGTACGTCGACAGTGACGCGATTCAGGAAATTCAA
TTGATGTTAAAAGCTACAGGTCCAAACTAAGGACAAATAAGAGAGCTTTC
TGTACAATATTGTTATTCTGTCTCGGAtggatttcattacaaaagttATA
AAAAGAGGCTTTTCCGTCGTGAAGCAAAATTTGACGAAGCTTGGTGAATT
TGTTGTTTGTTCTGATTTGCGTGAAAAAGATCCAAGAAGTTTATTTGATG
TTAAAACCGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039931XLOC_039931Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063705-exon-scaffold_398-1491911889:177844..178254TCONS_00063705-exon-scaffold_398-1491911889:177844..178254Clytia hemisphaericaexon
TCONS_00063705-exon-scaffold_398-1510915933:177844..178254TCONS_00063705-exon-scaffold_398-1510915933:177844..178254Clytia hemisphaericaexon
TCONS_00063705-exon-scaffold_398-1575043694:177844..178254TCONS_00063705-exon-scaffold_398-1575043694:177844..178254Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_398supercontigscaffold_398:177844..178254 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.513808	0	0.194553	0	0.187162	0.225803	0.634183	1.18402	0.366649	0.711757	0.620935	5.0117	5.75339	0.827596	0.642153	0	0.370719	12.9359	10.9228	0.784147	0.745452	0.201377	0.549242	0.377137	2.69269	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063705 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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