TCONS_00063704 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063704
Unique NameTCONS_00063704
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length455

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063704 ID=TCONS_00063704|Name=TCONS_00063704|organism=Clytia hemisphaerica|type=transcript|length=455bp
cagattttaccATGCAGAACGcaagatttttactgtcagtgGTATCCTCA
ACATTGAAGCGAATTCTCCCTCGGGCGTCATTCTCACCCTTCACAGTGAT
GGCACCGCGCTCAATTCCCTCCGCACCGGTATTTTCACCAACAAAGAAAC
AGGTTTGACTGTCTCTTCGTACAGCATTGCTGGCATCTTGGAGTTACCAT
CCGAAGTCCCTTTACAACTCTTCATTTACTTGAGTAACATGGAGCAGTAT
AAAGTGTTGGCGGGAAGTCGTGTCAGTGTAGCAGTTACCCAACAAGACTA
CCAAGCATTCCATATTGTACAACCCTCTCCTGTAAGTTTCTTTCAGTGTG
AACTATTGTTTATAAAGATGGCttgtatggcgcgccaaagcggaaataaa
tactatctttcatttcgcgacactatctttcatttcgcgacactatcttt
cattt
Run BLAST on NCBI

protein sequence of TCONS_00063704-protein

>TCONS_00063704-protein ID=TCONS_00063704-protein|Name=TCONS_00063704-protein|organism=Clytia hemisphaerica|type=polypeptide|length=151bp
RFYHAERKIFTVSGILNIEANSPSGVILTLHSDGTALNSLRTGIFTNKET
GLTVSSYSIAGILELPSEVPLQLFIYLSNMEQYKVLAGSRVSVAVTQQDY
QAFHIVQPSPVSFFQCELLFIKMACMARQSGNKYYLSFRDTIFHFATLSF
I
Run BLAST on NCBI

transcript from alignment at scaffold_398:111613..112067

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063704 ID=TCONS_00063704|Name=TCONS_00063704|organism=Clytia hemisphaerica|type=transcript|length=455bp|location=Sequence derived from alignment at scaffold_398:111613..112067 (Clytia hemisphaerica)
aaatgaaagatagtgtcgcgaaatgaaagatagtgtcgcgaaatgaaaga
tagtatttatttccgctttggcgcgccatacaaGCCATCTTTATAAACAA
TAGTTCACACTGAAAGAAACTTACAGGAGAGGGTTGTACAATATGGAATG
CTTGGTAGTCTTGTTGGGTAACTGCTACACTGACACGACTTCCCGCCAAC
ACTTTATACTGCTCCATGTTACTCAAGTAAATGAAGAGTTGTAAAGGGAC
TTCGGATGGTAACTCCAAGATGCCAGCAATGCTGTACGAAGAGACAGTCA
AACCTGTTTCTTTGTTGGTGAAAATACCGGTGCGGAGGGAATTGAGCGCG
GTGCCATCACTGTGAAGGGTGAGAATGACGCCCGAGGGAGAATTCGCTTC
AATGTTGAGGATACcactgacagtaaaaatcttgCGTTCTGCATggtaaa
atctg

Coding sequence (CDS) from alignment at scaffold_398:111613..112067

>TCONS_00063704 ID=TCONS_00063704|Name=TCONS_00063704|organism=Clytia hemisphaerica|type=CDS|length=453bp|location=Sequence derived from alignment at scaffold_398:111613..112067 (Clytia hemisphaerica)
aatgaaagatagtgtcgcgaaatgaaagatagtgtcgcgaaatgaaagat
agtatttatttccgctttggcgcgccatacaaGCCATCTTTATAAACAAT
AGTTCACACTGAAAGAAACTTACAGGAGAGGGTTGTACAATATGGAATGC
TTGGTAGTCTTGTTGGGTAACTGCTACACTGACACGACTTCCCGCCAACA
CTTTATACTGCTCCATGTTACTCAAGTAAATGAAGAGTTGTAAAGGGACT
TCGGATGGTAACTCCAAGATGCCAGCAATGCTGTACGAAGAGACAGTCAA
ACCTGTTTCTTTGTTGGTGAAAATACCGGTGCGGAGGGAATTGAGCGCGG
TGCCATCACTGTGAAGGGTGAGAATGACGCCCGAGGGAGAATTCGCTTCA
ATGTTGAGGATACcactgacagtaaaaatcttgCGTTCTGCATggtaaaa
tct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039930XLOC_039930Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063704-proteinTCONS_00063704-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063704-exon-scaffold_398-1491911889:111613..112067TCONS_00063704-exon-scaffold_398-1491911889:111613..112067Clytia hemisphaericaexon
TCONS_00063704-exon-scaffold_398-1510915933:111613..112067TCONS_00063704-exon-scaffold_398-1510915933:111613..112067Clytia hemisphaericaexon
TCONS_00063704-exon-scaffold_398-1575043694:111613..112067TCONS_00063704-exon-scaffold_398-1575043694:111613..112067Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_398supercontigscaffold_398:111613..112067 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.144972	0.304552	0.052689	3.13856e-09	0	0	0	0	0.16148	0	0	0.133146	1.03576	1.72128	0.3728	0	0.437097	0	3.06943	1.96159	0.39849	0	0	0.229424	0.721519	0.486283	0	0	0	0.0422002
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063704 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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