TCONS_00063696 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063696
Unique NameTCONS_00063696
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length958

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063696 ID=TCONS_00063696|Name=TCONS_00063696|organism=Clytia hemisphaerica|type=transcript|length=958bp
ttcAGTACGGGTACTTTGGAGATCCCACAGAGACTGAGATCTAGTTCGTT
TTCTTCAATtcttgatttaattttttgtgtGGACCATTTTTCATCCGCCA
TATTTGTTGTtgtgtttttattgattatgCCGGCTAACGAAACGTTCGGT
TacgaaaaattatatttcccgCCAAGTCTGAACATTATGCAAATGAACTC
GTCTccgttaaaaaaatgaaaacaattagAAAAGAAAACAAGCTATGGTT
AAACTgactaaaacaaaaaaacaaaaaatcaactATTTTCAGATGCAATC
GACATTTTAGGCACAACCATACATCGATCAAAATGTAAATTCTCTTTACC
ACATGAGAAGGAAAAAATTGCATTACAGCGTGGTATAAATGGATGAAACG
CCTCCTTCATAACATCACAACGCATTGAAATCTTGCAGTACGGACGTCTC
TGTTGTCGAAAATTTGTTATCATCACTTCACGAAAACTAAAATGGCTGAC
AAACCAGACATCTCTGAAGTTTCAACTTTcgacaaaacaaaattgaagaa
gaCTGAAACTCAAGAAAAAAATACCTTACCTAGCAAAGAGACTATCCAAC
AAGAGAAGACTtcgtaaaatgttaaaaagaaattgtacaaatgtattttt
taattttgttaattttattaCCCCACACAATAACATACCTTCAAGAGATA
TAATGGAATTGGAAGTTACCGAAATGTTTATAACAGGGCAGATGTGAGAA
TGTAATTTATGATATCTTttactgaaataaaaatatttgtaataaaCACA
AAAGGTTTTAGCTCTTTTGATCTTCTTTCAGAAACAGAACAGAGGGTACt
ctcagaaaaatattttcacttggaaatcctttgaaattttgatagaaGTT
TAGAAATCATACGGTcagaatttaatgaaaattttagcttgagaaaagag
acattttg
Run BLAST on NCBI

transcript from alignment at scaffold_398:46323..47581-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063696 ID=TCONS_00063696|Name=TCONS_00063696|organism=Clytia hemisphaerica|type=transcript|length=1259bp|location=Sequence derived from alignment at scaffold_398:46323..47581- (Clytia hemisphaerica)
TTCAGTACGGGTACTTTGGAGATCCCACAGAGACTGAGATCTAGTTCGTT
TTCTTCAATTCTTGATTTAATTTTTTGTGTGGACCATTTTTCATCCGCCA
TATTTGTTGTTGTGTTTTTATTGATTATGCCGGCTAACGAAACGTTCGGT
TACGAAAAATTATATTTCCCGCCAAGTCTGAACATTATGCAAATGAACTC
GTCTCCGTTAAAAAAATGAAAACAATTAGAAAAGAAAACAAGCTATGGTT
AAACTGACTAAAACAAAAAAACAAAAAATCAACTATTTTCAGATGCAATC
GACATTTTAGGCACAACCATACATCGATCAAAATGTAAATTCTCTTTACC
ACATGAGAAGGAAAAAATTGCATTACAGCGTGGTATAAATGGATGAAACG
CCTCCTTCATAACATCACAACGCATTGAAATCTTGCAGTACGGACGTCTC
TGTTGTCGAAAAGTGAGTATCTTTACCATTATGCTTAGACGACAAACTAC
AAGTTTTCATCAACCAGGATTAAGATGTATTTTTTTTCTTTATATATCTT
AATTTAACTTTTTCTTTACAGTTTGTTATCATCACTTCACGAAAACTAAA
ATGGCTGACAAACCAGACATCTCTGAAGTTTCAACTTTCGACAAAACAAA
ATTGAAGAAGACTGAAACTCAAGAAAAAAATACCTTACCTAGCAAAGAGA
GTAAGTAAATTCTCGTTGTACGTTGTTTTCCAGAATGGGAAATATATTTC
TGAGCGTTTTCTACTTTTAGTTTGTAATCTGAACTCTAAACTTTCCTCTC
GTAAAGGGAAACGCCCACTTCCGCATGCTCGTGTCAAAATCGGTTGACTA
TCAAATTACAGCATTATGATAATCGTCTTTTTTCTCTTTAAGCTATCCAA
CAAGAGAAGACTTCGTAAAATGTTAAAAAGAAATTGTACAAATGTATTTT
TTAATTTTGTTAATTTTATTACCCCACACAATAACATACCTTCAAGAGAT
ATAATGGAATTGGAAGTTACCGAAATGTTTATAACAGGGCAGATGTGAGA
ATGTAATTTATGATATCTTTTACTGAAATAAAAATATTTGTAATAAACAC
AAAAGGTTTTAGCTCTTTTGATCTTCTTTCAGAAACAGAACAGAGGGTAC
TCTCAGAAAAATATTTTCACTTGGAAATCCTTTGAAATTTTGATAGAAGT
TTAGAAATCATACGGTCAGAATTTAATGAAAATTTTAGCTTGAGAAAAGA
GACATTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039923XLOC_039923Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063696-exon-scaffold_398-1575043694:47120..47581TCONS_00063696-exon-scaffold_398-1575043694:47120..47581Clytia hemisphaericaexon
TCONS_00063696-exon-scaffold_398-1575043694:46882..47010TCONS_00063696-exon-scaffold_398-1575043694:46882..47010Clytia hemisphaericaexon
TCONS_00063696-exon-scaffold_398-1575043694:46323..46689TCONS_00063696-exon-scaffold_398-1575043694:46323..46689Clytia hemisphaericaexon
TCONS_00063696-exon-scaffold_398-1510915933:47120..47581TCONS_00063696-exon-scaffold_398-1510915933:47120..47581Clytia hemisphaericaexon
TCONS_00063696-exon-scaffold_398-1510915933:46882..47010TCONS_00063696-exon-scaffold_398-1510915933:46882..47010Clytia hemisphaericaexon
TCONS_00063696-exon-scaffold_398-1510915933:46323..46689TCONS_00063696-exon-scaffold_398-1510915933:46323..46689Clytia hemisphaericaexon
TCONS_00063696-exon-scaffold_398-1491911889:47120..47581TCONS_00063696-exon-scaffold_398-1491911889:47120..47581Clytia hemisphaericaexon
TCONS_00063696-exon-scaffold_398-1491911889:46882..47010TCONS_00063696-exon-scaffold_398-1491911889:46882..47010Clytia hemisphaericaexon
TCONS_00063696-exon-scaffold_398-1491911889:46323..46689TCONS_00063696-exon-scaffold_398-1491911889:46323..46689Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_398supercontigscaffold_398:46323..47581 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1721.64	1733.08	2345.58	2683.45	1675.64	1229.44	2396.25	2517.87	1170.65	1083.05	688.79	608.965	458.698	333.13	973.762	1012.65	557.03	685.028	708.401	710.117	663.243	631.741	1524.74	1225.04	615.258	978.505	638.3	382.351	2107.94	2206.66
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063696 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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