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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063690 ID=TCONS_00063690|Name=TCONS_00063690|organism=Clytia hemisphaerica|type=transcript|length=289bp
AGGCGGAAGCAAAAGCAAAATTAAAACCGCCCTCCAAACGAAAAGCTATA
CGTGAAAAACACCATCAGCACGGCAAAGGCGCATTCCCTAAAGTTCCAAA
AGACAAATGGCCGCTATGCGTGACGTGCAAGAACAACCCTTGGGGCAAGA
AATGTGAATACAATTTATGTAAAACTTGTTGTAAAGATATGACCGCTATC
AAAGTACTCAATTGTTCAGGTCACAAATTCAAATTCTTATTCAACAAACT
GAGACGTGAAAAAGAAGACgaagaagaagcagaaaagca Run BLAST on NCBI transcript from alignment at scaffold_398:137595..140175+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063690 ID=TCONS_00063690|Name=TCONS_00063690|organism=Clytia hemisphaerica|type=transcript|length=2581bp|location=Sequence derived from alignment at scaffold_398:137595..140175+ (Clytia hemisphaerica)
AGGCGGAAGCAAAAGCAAAATTAAAACCGCCCTCCAAACGAAAAGCTATA
CGTGAAAAACACCATCAGCACGGCAAAGGCGCATTCCCTAAAGGTACCTc
aagtttttttgacttttttttttttgcttttttcgctACCctaagggaac
tttttttgacGGGAACTAATTTGGCGGGCAGCAaatatctttaaattttt
ttaattttggcaaacagtgaatttttattaattttggttggaactaattt
tggcgaataacAGCGTAAATCtcttctattttgccttattttgagcaatt
ttggtgaatttcaggggttatttaggcaaggaaacaagaaatttaatttt
ggcgggaacttattttggcgagtgagcaaaatatttaattttggcgggaa
ctaattttggcgaatttcgtctaaattcgccaactctgccaaaattagtt
cccgcaaaaataagttcccttaaggtgtACTATGAAAAATGTTTCGATCT
CAAGCATTGTTTAAGGCGTACGCATTTGTTTAGCTCGGTGTTTTTCTCAg
ccttctttttttatgagGGCTCAAATAGAAGATTTTAGTAAAAACGGCAT
AGAATCTAGAATCATATACATCTGATTGATGTCCTGATGGCATTTCATAG
AATTGGTCAATCGAATCGGTTTGATGTCAGCGGCCCAATGTCCCATGACA
GGAatgataccttatcggggaaaacttcgtcggggaaaagtgacgaaatt
ttggacaagtgacgaatattttcctcgacgaaaattttccccgacgaaaa
ttttccccgacgaagttttccccgataaggtagtcaGTCGACCTGATGTT
TCGTATTCCCGGCCGGGTTCAACTGCCCTTGTTAATAAGCctgaaaaata
tttcggttggaccagTTAATACCCGAAAACGAGGGGTAGAGTTTAGGCCT
CCCACTGCAAAATCCACGAGGCAGTCGGGCAAAATTCTGTCATCTAagcc
ttccagatgttgaaaattatCCCCGAACTTCAGAGAtatagcgtgtcgga
agaaaatttctaaatagTGCCAGTACAAGAGATAAGTTTGTGAGGATCAA
ATATTCTTTCTTTGCTTCATAGTTCCAAAAGACAAATGGCCGCTATGCGT
GACGTGCAAGAACAACCCTTGGGTAAGTTAAATATGTTTTGACATTTCTT
TATTTGGAACACACAATTCCTTAGCCGTGCCGGTGCGAGAATAGCCATtt
ccttaaagggacataaaagtagtaaaatgtaaacattgatcgaaccacgt
gtcattaaagagaacaattaaaatcacgtgtccaaaacaaacttgtaaaa
caattgaacaatcaaaattagccatgtttggtttgatttttttattttga
catgtgacatttgttttgattttgtatccgctgcatacagtttgtttaca
aatttcgcaagtactgttatgtccctttaaactgGTCACCTGTCAATTAG
CAGTGTTGTCAGTTTGAATCTTTTGCTCTCATTATGTAATtatttcagtt
tttctttgggggggggttggaaacgAATGCACAATTTATCCTTTCTCTGA
GTGCTTCGTCCCAAATGTACTAAAATTAAgcaattttttattgaattttc
ctcccgattttcttttaatattaATTGAAAAAGGCTATACTAGGCGGCTT
TTTTACGCGGTAACAGACATTTCATTTTGCGACTTGAATGTTTCGAGCCC
TAGTGAAATAATTGagtttgcgtcaaaacacttgagaACTGTTGCGAAAG
GCTTATTATTTCCCGAACATCATCAAAgtgtaaaaaattatttttggtga
aGTCCCCTTTTGCGTAGCGTAAAACTTGTCCTCCTttacttttaaaactt
ttttgactggGAAATATGCAAAAGTTGGCTTGGAAAATTACTTTAAATCG
CATGCAATTATtttattcttgtttttttaCAGGGCAAGAAATGTGAATAC
AATTTATGTAAAACTTGTTGTAAAGATATGACCGCTATCAAAGTACTCAA
TTGTTCAGGtacgttttcattttttgtttacttcataCTGGTTTATTTTA
GTTTTCTAGACCATCTATTCGAGAGTGAAATGGGATGCTAAAAATCAGGG
TTTCACTCCGGCAAATGACAAATTATAATTCCGGTGGAGTTGAGATTCTA
GACTGGCAGATCTTTAGCAATGTATTGGTTGGTGTTATGACCATCGGTTG
GCGAATGAAATTTCTAGGCCATTGATTTCTTTAAACATGTTTGCCGTTCG
TTGAGCCTTAATAAACACCCTGACAACTTATAACTAGCGTCTTTGTTGTT
TATTCGAGTTCTACTCCACTCGCCTTTACTCTGATATTAATTATTAATAC
AGAAAAAAGCCAGTAGAGGGGCTTGGTCttgaattttgttttgctttctA
AAAGATCTAGTATAACTGGCCTGCTatcaatctttattttttgttttcgt
tATTTTCGAAGGTCACAAATTCAAATTCTTATTCAACAAACTGAGACGTG
AAAAAGAAGACgaagaagaagcagaaaagca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063690-exon-scaffold_398-1491911889:137595..137687 | TCONS_00063690-exon-scaffold_398-1491911889:137595..137687 | Clytia hemisphaerica | exon |
| TCONS_00063690-exon-scaffold_398-1510915933:137595..137687 | TCONS_00063690-exon-scaffold_398-1510915933:137595..137687 | Clytia hemisphaerica | exon |
| TCONS_00063690-exon-scaffold_398-1575043694:137595..137687 | TCONS_00063690-exon-scaffold_398-1575043694:137595..137687 | Clytia hemisphaerica | exon |
| TCONS_00063690-exon-scaffold_398-1491911889:138717..138766 | TCONS_00063690-exon-scaffold_398-1491911889:138717..138766 | Clytia hemisphaerica | exon |
| TCONS_00063690-exon-scaffold_398-1510915933:138717..138766 | TCONS_00063690-exon-scaffold_398-1510915933:138717..138766 | Clytia hemisphaerica | exon |
| TCONS_00063690-exon-scaffold_398-1575043694:138717..138766 | TCONS_00063690-exon-scaffold_398-1575043694:138717..138766 | Clytia hemisphaerica | exon |
| TCONS_00063690-exon-scaffold_398-1491911889:139577..139652 | TCONS_00063690-exon-scaffold_398-1491911889:139577..139652 | Clytia hemisphaerica | exon |
| TCONS_00063690-exon-scaffold_398-1510915933:139577..139652 | TCONS_00063690-exon-scaffold_398-1510915933:139577..139652 | Clytia hemisphaerica | exon |
| TCONS_00063690-exon-scaffold_398-1575043694:139577..139652 | TCONS_00063690-exon-scaffold_398-1575043694:139577..139652 | Clytia hemisphaerica | exon |
| TCONS_00063690-exon-scaffold_398-1491911889:140106..140175 | TCONS_00063690-exon-scaffold_398-1491911889:140106..140175 | Clytia hemisphaerica | exon |
| TCONS_00063690-exon-scaffold_398-1510915933:140106..140175 | TCONS_00063690-exon-scaffold_398-1510915933:140106..140175 | Clytia hemisphaerica | exon |
| TCONS_00063690-exon-scaffold_398-1575043694:140106..140175 | TCONS_00063690-exon-scaffold_398-1575043694:140106..140175 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_398 | supercontig | scaffold_398:137595..140175 + |
Blast
The following BLAST results are available for this feature:
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