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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063670 ID=TCONS_00063670|Name=TCONS_00063670|organism=Clytia hemisphaerica|type=transcript|length=2194bp
attgaaaataaatacataTCTACAATTTCATATTCACAATTTAGCAGAAA
ATCCTTTATGTTCACAATAGCACTCTtgcaaaagaaaaagcaaagatTTG
ATTAAGCCAACATAACAGTGTCCTATCATTCTTGCTCTGAAGGCTTAATC
AATGAAGaccacaaatacaaagaaaatattcaatgaaagagttAGTGAGA
GCCACTATGTTCTGAAAACATCCTTTGTGTGCACAGAGTTGCATTTAACA
AATGCTCTAGCAGGAGCATCACAAATAATTGCTTTCAATTCGAAGATAAT
AATGGTCCCATCAAATTCTATACCATTTCTCACAAGATCAACAACTTCAT
CCACAAAATCTGAGAGGAAAACTTCTGCTGAAGATGGTTTGCTAGTTCCA
TGATAAATAGCGattggaaaaacaaatttggaTCTAAAAACAGCTCCTAG
AATTGGCCATAGCTGAGACTTGCTGGATTTCGAAATAGGAACTCCGTCAA
TGTTAACAAGAAGTTTCAATTTGTTTTCAGACAAGTCAAGAAGATTTTCT
GATAATAAcaaaagtaaattatttttgattccAAAATATCTGTAAGAGCT
CTCATCTCCAGGGTTGTGGATTATGTCATCAATAGTCCTTTGTGTTTTTA
GTAGTGTTCTGCTGTCTTTAGGAACTTCCACTCCGTAATCTATTAGCGCA
GACAGTAGATCATTGACACAACCACGACTTAATCTATATTTTGTTGCTAC
ATTTCTTAGATTACTCTGTAACTTTGAATTATCGTCTAATTGATTCTCAT
CACAAAAAAGGATTTCTGTAAGATTGTTGTCATTGTCAGAGGATAAAGTT
TCGAAACTAGTATCTAAGGCATGCAATGATTCATCTGTTGAAGAACTGTA
TGTGCTCCCAAAGTCGGACtgttcaaaaatattattcaaattttGTGAAG
TATTTAGGTCAGCAGCAGCACTCTCAACAACTTGAACTTTAGgttgtttt
tctccaaaaagtttttccCTCAACCTCTGCACTTTTCTgcgttttttcct
tttttctgattCTTCCATATATACAAATACCTTTAAATATTACATAAcat
caaaaatagtttcaatAGGTTAGTGATTCAATAACAATAGGTACTTAAAA
CTCCATATCTCCAAATTCAAAAGGGGCTTaagtaaatcttttttttgaaa
tttatgatttttggtttttataaaTCTCTGCCTTGCTGGTGGCTTTCTTT
TGATGTATGTATCATACTGAAGGTCTGAAAATCAAAAGTCAATCAACTTT
TTACAGTTCAAGGGCCTAAGTCTAATAAAATTGAGTATTGGCCTTTATCT
TATTGATGTTTTCTTTATCTAAAATCTAGGTGTAGGTagactttgaaatt
gaaaaggcAGAAAAGTAACCATTCAACTTTCCTACAAATTTATGTTCAGT
TTAAAAAAGGCATGTGTTCACTTCACAAAATTTACTAAGTCACACCTGTT
AGGTAAACAAATATCTACTTTCCAGCAATATGCCTtctaatcaaataaac
aaattaaagctttaagagccattttctaaGAGATCCAGGCAAATTGAGGA
agttttgaaatgatttttagCCCATTTTGAGCATAAAGAGGTCCCAATTT
CTCCATTTCTTGGTAATATGGGATGAATTctacacaaaaataaaaaatga
ggtTCTGAATATTCCTCGGTGTGTAGAAATCATAGGCCGAAACCACAACG
GCTCTTTAAATGCTTAGATGAAATGCTGTGATGGCCACACCCATTGTTGG
cctatgaattttttttgttgacaTGAAAGTAAGTTCAGTTGTTTATCAGA
AAATCTGATAAACTGGTACATGTAGAAGTGAGGCCCAAGTAAGATATTTG
ATCTCAAAAAGGAcagaaatttggcaaaaatgtGGTTTTGGCCTATGATT
TCTAGACACCGAGGAATATTCAGAaccttgttttttattttttgtgtaga
acttaccgggtgacccacgaaaaagttcggacgtttctcggcgtcttgag
gctgaacaaatgtcccaaagtgcttggagttttattatttagaaagtaga
tatcctaacttaaaatccgagccattactttttaaatttgacgcacaagt
tccctagttatgagcttttaaactcaaaattcacttttcggaaa Run BLAST on NCBI protein sequence of TCONS_00063670-protein >TCONS_00063670-protein ID=TCONS_00063670-protein|Name=TCONS_00063670-protein|organism=Clytia hemisphaerica|type=polypeptide|length=287bp
MEESEKRKKRRKVQRLREKLFGEKQPKVQVVESAAADLNTSQNLNNIFEQ
SDFGSTYSSSTDESLHALDTSFETLSSDNDNNLTEILFCDENQLDDNSKL
QSNLRNVATKYRLSRGCVNDLLSALIDYGVEVPKDSRTLLKTQRTIDDII
HNPGDESSYRYFGIKNNLLLLLSENLLDLSENKLKLLVNIDGVPISKSSK
SQLWPILGAVFRSKFVFPIAIYHGTSKPSSAEVFLSDFVDEVVDLVRNGI
EFDGTIIIFELKAIICDAPARAFVKCNSVHTKDVFRT Run BLAST on NCBI transcript from alignment at scaffold_397:198770..200963 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063670 ID=TCONS_00063670|Name=TCONS_00063670|organism=Clytia hemisphaerica|type=transcript|length=2194bp|location=Sequence derived from alignment at scaffold_397:198770..200963 (Clytia hemisphaerica)
tttccgaaaagtgaattttgagtttaaaagctcataactagggaacttgt
gcgtcaaatttaaaaagtaatggctcggattttaagttaggatatctact
ttctaaataataaaactccaagcactttgggacatttgttcagcctcaag
acgccgagaaacgtccgaactttttcgtgggtcacccggtaagttctaca
caaaaaataaaaaacaaggtTCTGAATATTCCTCGGTGTCTAGAAATCAT
AGGCCAAAACCacatttttgccaaatttctgTCCTTTTTGAGATCAAATA
TCTTACTTGGGCCTCACTTCTACATGTACCAGTTTATCAGATTTTCTGAT
AAACAACTGAACTTACTTTCAtgtcaacaaaaaaaattcataggCCAACA
ATGGGTGTGGCCATCACAGCATTTCATCTAAGCATTTAAAGAGCCGTTGT
GGTTTCGGCCTATGATTTCTACACACCGAGGAATATTCAGAacctcattt
tttatttttgtgtagAATTCATCCCATATTACCAAGAAATGGAGAAATTG
GGACCTCTTTATGCTCAAAATGGGctaaaaatcatttcaaaactTCCTCA
ATTTGCCTGGATCTCttagaaaatggctcttaaagctttaatttgtttat
ttgattagaAGGCATATTGCTGGAAAGTAGATATTTGTTTACCTAACAGG
TGTGACTTAGTAAATTTTGTGAAGTGAACACATGCCTTTTTTAAACTGAA
CATAAATTTGTAGGAAAGTTGAATGGTTACTTTTCTgccttttcaatttc
aaagtctACCTACACCTAGATTTTAGATAAAGAAAACATCAATAAGATAA
AGGCCAATACTCAATTTTATTAGACTTAGGCCCTTGAACTGTAAAAAGTT
GATTGACTTTTGATTTTCAGACCTTCAGTATGATACATACATCAAAAGAA
AGCCACCAGCAAGGCAGAGAtttataaaaaccaaaaatcataaatttcaa
aaaaaagatttacttAAGCCCCTTTTGAATTTGGAGATATGGAGTTTTAA
GTACCTATTGTTATTGAATCACTAACCTattgaaactatttttgatgTTA
TGTAATATTTAAAGGTATTTGTATATATGGAAGaatcagaaaaaaggaaa
aaacgcAGAAAAGTGCAGAGGTTGAGggaaaaactttttggagaaaaaca
acCTAAAGTTCAAGTTGTTGAGAGTGCTGCTGCTGACCTAAATACTTCAC
aaaatttgaataatatttttgaacaGTCCGACTTTGGGAGCACATACAGT
TCTTCAACAGATGAATCATTGCATGCCTTAGATACTAGTTTCGAAACTTT
ATCCTCTGACAATGACAACAATCTTACAGAAATCCTTTTTTGTGATGAGA
ATCAATTAGACGATAATTCAAAGTTACAGAGTAATCTAAGAAATGTAGCA
ACAAAATATAGATTAAGTCGTGGTTGTGTCAATGATCTACTGTCTGCGCT
AATAGATTACGGAGTGGAAGTTCCTAAAGACAGCAGAACACTACTAAAAA
CACAAAGGACTATTGATGACATAATCCACAACCCTGGAGATGAGAGCTCT
TACAGATATTTTggaatcaaaaataatttacttttgTTATTATCAGAAAA
TCTTCTTGACTTGTCTGAAAACAAATTGAAACTTCTTGTTAACATTGACG
GAGTTCCTATTTCGAAATCCAGCAAGTCTCAGCTATGGCCAATTCTAGGA
GCTGTTTTTAGAtccaaatttgtttttccaatCGCTATTTATCATGGAAC
TAGCAAACCATCTTCAGCAGAAGTTTTCCTCTCAGATTTTGTGGATGAAG
TTGTTGATCTTGTGAGAAATGGTATAGAATTTGATGGGACCATTATTATC
TTCGAATTGAAAGCAATTATTTGTGATGCTCCTGCTAGAGCATTTGTTAA
ATGCAACTCTGTGCACACAAAGGATGTTTTCAGAACATAGTGGCTCTCAC
TaactctttcattgaatattttctttgtatttgtggtCTTCATTGATTAA
GCCTTCAGAGCAAGAATGATAGGACACTGTTATGTTGGCTTAATCAAatc
tttgctttttcttttgcaAGAGTGCTATTGTGAACATAAAGGATTTTCTG
CTAAATTGTGAATATGAAATTGTAGAtatgtatttattttcaat Coding sequence (CDS) from alignment at scaffold_397:198770..200963 >TCONS_00063670 ID=TCONS_00063670|Name=TCONS_00063670|organism=Clytia hemisphaerica|type=CDS|length=864bp|location=Sequence derived from alignment at scaffold_397:198770..200963 (Clytia hemisphaerica)
ATGGAAGaatcagaaaaaaggaaaaaacgcAGAAAAGTGCAGAGGTTGAG
ggaaaaactttttggagaaaaacaacCTAAAGTTCAAGTTGTTGAGAGTG
CTGCTGCTGACCTAAATACTTCACaaaatttgaataatatttttgaacaG
TCCGACTTTGGGAGCACATACAGTTCTTCAACAGATGAATCATTGCATGC
CTTAGATACTAGTTTCGAAACTTTATCCTCTGACAATGACAACAATCTTA
CAGAAATCCTTTTTTGTGATGAGAATCAATTAGACGATAATTCAAAGTTA
CAGAGTAATCTAAGAAATGTAGCAACAAAATATAGATTAAGTCGTGGTTG
TGTCAATGATCTACTGTCTGCGCTAATAGATTACGGAGTGGAAGTTCCTA
AAGACAGCAGAACACTACTAAAAACACAAAGGACTATTGATGACATAATC
CACAACCCTGGAGATGAGAGCTCTTACAGATATTTTggaatcaaaaataa
tttacttttgTTATTATCAGAAAATCTTCTTGACTTGTCTGAAAACAAAT
TGAAACTTCTTGTTAACATTGACGGAGTTCCTATTTCGAAATCCAGCAAG
TCTCAGCTATGGCCAATTCTAGGAGCTGTTTTTAGAtccaaatttgtttt
tccaatCGCTATTTATCATGGAACTAGCAAACCATCTTCAGCAGAAGTTT
TCCTCTCAGATTTTGTGGATGAAGTTGTTGATCTTGTGAGAAATGGTATA
GAATTTGATGGGACCATTATTATCTTCGAATTGAAAGCAATTATTTGTGA
TGCTCCTGCTAGAGCATTTGTTAAATGCAACTCTGTGCACACAAAGGATG
TTTTCAGAACATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063670-exon-scaffold_397-1491911889:198770..200963 | TCONS_00063670-exon-scaffold_397-1491911889:198770..200963 | Clytia hemisphaerica | exon |
| TCONS_00063670-exon-scaffold_397-1510915933:198770..200963 | TCONS_00063670-exon-scaffold_397-1510915933:198770..200963 | Clytia hemisphaerica | exon |
| TCONS_00063670-exon-scaffold_397-1575043694:198770..200963 | TCONS_00063670-exon-scaffold_397-1575043694:198770..200963 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_397 | supercontig | scaffold_397:198770..200963 . |
Blast
The following BLAST results are available for this feature:
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