TCONS_00063663 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063663
Unique NameTCONS_00063663
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length420

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063663 ID=TCONS_00063663|Name=TCONS_00063663|organism=Clytia hemisphaerica|type=transcript|length=420bp
ATTGAACTAGCCTGGATGATCCTTTAGACTGAAGGACATATTCCATCGAC
CAATCAGATTCATTCTTTACTTTGTTCACCTTAACCCTTTTGAGGGGGCG
CCTATTCGAGCCAGGACGGCTAATTGAGCCGGGGCGctaattaaattatt
ttcaaaattgcaGTATTTCTTTCATTCCTTCTTTTCATTCATATAGACAT
TACAATTATACAATCTTATATTATATCAATGTCCTCAGGATCCTCATGGT
CTGAATCGATAGTTAGGAAATCAGGTGTCGCTTCGAAAATATCCCCGTCA
TTGATATCTATCTCACTAAATGGATCAACatcttttttagtcaaaatcgA
GAGCTGGCTTTCCAAAATCTCCTTTCCTTTGTGACATGGCTGACCTTCTT
TGAAACAATGTATCTTTTGG
Run BLAST on NCBI

transcript from alignment at scaffold_397:95327..95746

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063663 ID=TCONS_00063663|Name=TCONS_00063663|organism=Clytia hemisphaerica|type=transcript|length=420bp|location=Sequence derived from alignment at scaffold_397:95327..95746 (Clytia hemisphaerica)
CCAAAAGATACATTGTTTCAAAGAAGGTCAGCCATGTCACAAAGGAAAGG
AGATTTTGGAAAGCCAGCTCTcgattttgactaaaaaagatGTTGATCCA
TTTAGTGAGATAGATATCAATGACGGGGATATTTTCGAAGCGACACCTGA
TTTCCTAACTATCGATTCAGACCATGAGGATCCTGAGGACATTGATATAA
TATAAGATTGTATAATTGTAATGTCTATATGAATGAAAAGAAGGAATGAA
AGAAATACtgcaattttgaaaataatttaattagCGCCCCGGCTCAATTA
GCCGTCCTGGCTCGAATAGGCGCCCCCTCAAAAGGGTTAAGGTGAACAAA
GTAAAGAATGAATCTGATTGGTCGATGGAATATGTCCTTCAGTCTAAAGG
ATCATCCAGGCTAGTTCAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039905XLOC_039905Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063663-exon-scaffold_397-1491911889:95327..95746TCONS_00063663-exon-scaffold_397-1491911889:95327..95746Clytia hemisphaericaexon
TCONS_00063663-exon-scaffold_397-1510915933:95327..95746TCONS_00063663-exon-scaffold_397-1510915933:95327..95746Clytia hemisphaericaexon
TCONS_00063663-exon-scaffold_397-1575043694:95327..95746TCONS_00063663-exon-scaffold_397-1575043694:95327..95746Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_397supercontigscaffold_397:95327..95746 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.504423	1.10427	0.761511	0.189094	0.226747	0.361672	0	0.410566	0.566757	0.70202	0.170349	0.453566	0.111825	0.348395	0.763808	0.743472	0.830451	0.388123	0.751024	0.561108	0.664886	1.95688	0.425508	0.359358	0.722102	0	1.31553	0.276102	0.585338	0.780574
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063663 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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