TCONS_00063658 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063658
Unique NameTCONS_00063658
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length623

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063658 ID=TCONS_00063658|Name=TCONS_00063658|organism=Clytia hemisphaerica|type=transcript|length=623bp
CCACGAGAAACGTGCTTTTTGTGGTCacttattgattttatttttgacca
aTCGATGCAGTATAAATAGGATTAGTGGACCCCTTAATCTACATTCAACA
CATTGTTTGGAGTATTGACGGATACAAAGTGAAGAAGATGTTGAAGTTAA
TTTTGGGTTTTGCGTTTATTGCGATATGTAGTGCAAGTACTATTCAGCTT
TTGCGAGTACGCACGACAAAAAGTATCAAGACATCACAATACACTATCCA
TCGGAAAGCCTACACATGGACTGACGCACAAAAGGAATGCAGAAGATGTG
GTGGTTACCTAGCAACCATTAATGACTCAGCAGAACATTTCTACTTGGCT
AACGAACTCCAACGGAGAAAAATCAGTACAGCTTGGATTGGGTTGAACGA
TAGAACTAAAGAAGGAACGTACCGCTGGGATCGATACAACTCGTTGGGTG
GTTACAAGAGATGGTGTAAAGGACAACCCAATAATTGGAGGAACAGTCAA
GATTGCGTTATGCTTACTGGCAATAGCAAATGTTTGAACGATCGCGCTTG
TCTTTCCcgaaaatttttcatttgtgAAGTTAATGTTTATAAGACTTTGA
GTGTCCAAACTGTTTGATTTTCA
Run BLAST on NCBI

protein sequence of TCONS_00063658-protein

>TCONS_00063658-protein ID=TCONS_00063658-protein|Name=TCONS_00063658-protein|organism=Clytia hemisphaerica|type=polypeptide|length=159bp
MLKLILGFAFIAICSASTIQLLRVRTTKSIKTSQYTIHRKAYTWTDAQKE
CRRCGGYLATINDSAEHFYLANELQRRKISTAWIGLNDRTKEGTYRWDRY
NSLGGYKRWCKGQPNNWRNSQDCVMLTGNSKCLNDRACLSRKFFICEVNV
YKTLSVQTV
Run BLAST on NCBI

transcript from alignment at scaffold_397:183140..184700-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063658 ID=TCONS_00063658|Name=TCONS_00063658|organism=Clytia hemisphaerica|type=transcript|length=1561bp|location=Sequence derived from alignment at scaffold_397:183140..184700- (Clytia hemisphaerica)
CCACGAGAAACGTGCTTTTTGTGGTCACTTATTGATTTTATTTTTGACCA
ATCGATGCAGTATAAATAGGATTAGTGGACCCCTTAATCTACATTCAACA
CATTGTTTGGAGTATTGACGGATACAAAGTGAAGAAGATGTTGAAGTTAA
TTTTGGGTTTTGCGTTTATTGCGATATGTAGTGCAAGTACTATTCGTAAG
TACTTTGGTATTTTTTTTGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGCT
GGTGTCTCCTGGGGCGTTGTTCTTAGAATTCACTATATAAGAAATATGGT
TTAAGTCGAAGGGAGATTCGTGAACCTTTTTCGATGTCGAAGCAAGTTTA
CAGTCGATAAGGTCCAAACTCTACCATGGCAGTTTTCTTTCCACTACCGT
CATTATGGGCAACAAACTCTGCTCATTTACTATCTCTACATTGGTCGCTA
ACATTCTGTGTAGTTTGGAGTTGCCCTGTTTATGGTCGTGTTTCCAAAGC
ATGTCTTGCCATGAGCATCAGAGTCGAAATTCCAATGGATATATTAGATT
GTACTTTCGGTACTCTAGTCTTCGAGGTTGTTTTTCGTAGAGTACTTGAA
AAAGATTTTATTCTTTTTTTATGTAGAGCTTTTGCGAGTACGCACGACAA
AAAGTATCAAGACATCACAATACACTATCCATCGGAAAGCCTACACATGG
ACTGACGCACAAAAGGAATGCAGAAGATGTGGTGGTTACCTAGCAACCAT
TAATGACTCAGCAGAACATTTCTACTTGGCTAACGAACTCCAGTAAGTCA
TTAATACACAACCAAGAGACTCGCGCGACCCGGCGAGAGAAAAATTGTCG
CCCATCATGGTTGTGCGATGACGAAATTCTTTAAATTTAGCACACTAAAA
ACACTATAATAGATCTTATTTGAATTTTTTATTTTTCTAAAAAAGCGATG
AATTGTTGGATTGTTTCGGGGGTATAACAATAGAAATCTCATAGAAATTC
CTCGAGGGAATTCTGTTGTAATACCCTCGAAACAATCCCACAATGCATCG
CTATTTTAGCAAAATCAAAAACTCCGATAAGATCTATTGGACAAAAACAG
GCTTACTGCAGAAAGAGAGCCATGACATCCTCCCCCTCATGGGTCCATGA
AAGAACCAAAAAGAAACCCTTTTTAGGTTTGCTTAAAATCTTGTTGCAAT
TTTCCCAAAGTTTGAAAGTTTTGCAGATGAATGATGAAAGATATCTAACT
GAAGTTTCACTCGCAAGGAACTAATTCTATTCTACTCTTGATATTTTAGA
CGGAGAAAAATCAGTACAGCTTGGATTGGGTTGAACGATAGAACTAAAGA
AGGAACGTACCGCTGGGATCGATACAACTCGTTGGGTGGTTACAAGAGAT
GGTGTAAAGGACAACCCAATAATTGGAGGAACAGTCAAGATTGCGTTATG
CTTACTGGCAATAGCAAATGTTTGAACGATCGCGCTTGTCTTTCCCGAAA
ATTTTTCATTTGTGAAGTTAATGTTTATAAGACTTTGAGTGTCCAAACTG
TTTGATTTTCA

Coding sequence (CDS) from alignment at scaffold_397:183140..184700-

>TCONS_00063658 ID=TCONS_00063658|Name=TCONS_00063658|organism=Clytia hemisphaerica|type=CDS|length=1440bp|location=Sequence derived from alignment at scaffold_397:183140..184700- (Clytia hemisphaerica)
ACGGAGAAAAATCAGTACAGCTTGGATTGGGTTGAACGATAGAACTAAAG
AAGGAACGTACCGCTGGGATCGATACAACTCGTTGGGTGGTTACAAGAGA
TGGTGTAAAGGACAACCCAATAATTGGAGGAACAGTCAAGATTGCGTTAT
GCTTACTGGCAATAGCAAATGTTTGAACGATCGCGCTTGTCTTTCCCGAA
AATTTTTCATTTGTGAAGTTAATGTTTATAAGACTTTGAGTGTCCAAACT
GTTTGAAGCTTTTGCGAGTACGCACGACAAAAAGTATCAAGACATCACAA
TACACTATCCATCGGAAAGCCTACACATGGACTGACGCACAAAAGGAATG
CAGAAGATGTGGTGGTTACCTAGCAACCATTAATGACTCAGCAGAACATT
TCTACTTGGCTAACGAACTCCAATGTTGAAGTTAATTTTGGGTTTTGCGT
TTATTGCGATATGTAGTGCAAGTACTATTCACGGAGAAAAATCAGTACAG
CTTGGATTGGGTTGAACGATAGAACTAAAGAAGGAACGTACCGCTGGGAT
CGATACAACTCGTTGGGTGGTTACAAGAGATGGTGTAAAGGACAACCCAA
TAATTGGAGGAACAGTCAAGATTGCGTTATGCTTACTGGCAATAGCAAAT
GTTTGAACGATCGCGCTTGTCTTTCCCGAAAATTTTTCATTTGTGAAGTT
AATGTTTATAAGACTTTGAGTGTCCAAACTGTTTGAAGCTTTTGCGAGTA
CGCACGACAAAAAGTATCAAGACATCACAATACACTATCCATCGGAAAGC
CTACACATGGACTGACGCACAAAAGGAATGCAGAAGATGTGGTGGTTACC
TAGCAACCATTAATGACTCAGCAGAACATTTCTACTTGGCTAACGAACTC
CAATGTTGAAGTTAATTTTGGGTTTTGCGTTTATTGCGATATGTAGTGCA
AGTACTATTCACGGAGAAAAATCAGTACAGCTTGGATTGGGTTGAACGAT
AGAACTAAAGAAGGAACGTACCGCTGGGATCGATACAACTCGTTGGGTGG
TTACAAGAGATGGTGTAAAGGACAACCCAATAATTGGAGGAACAGTCAAG
ATTGCGTTATGCTTACTGGCAATAGCAAATGTTTGAACGATCGCGCTTGT
CTTTCCCGAAAATTTTTCATTTGTGAAGTTAATGTTTATAAGACTTTGAG
TGTCCAAACTGTTTGAAGCTTTTGCGAGTACGCACGACAAAAAGTATCAA
GACATCACAATACACTATCCATCGGAAAGCCTACACATGGACTGACGCAC
AAAAGGAATGCAGAAGATGTGGTGGTTACCTAGCAACCATTAATGACTCA
GCAGAACATTTCTACTTGGCTAACGAACTCCAATGTTGAAGTTAATTTTG
GGTTTTGCGTTTATTGCGATATGTAGTGCAAGTACTATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039900XLOC_039900Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063658-proteinTCONS_00063658-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063658-exon-scaffold_397-1575043694:184506..184700TCONS_00063658-exon-scaffold_397-1575043694:184506..184700Clytia hemisphaericaexon
TCONS_00063658-exon-scaffold_397-1575043694:183909..184074TCONS_00063658-exon-scaffold_397-1575043694:183909..184074Clytia hemisphaericaexon
TCONS_00063658-exon-scaffold_397-1575043694:183140..183401TCONS_00063658-exon-scaffold_397-1575043694:183140..183401Clytia hemisphaericaexon
TCONS_00063658-exon-scaffold_397-1510915933:184506..184700TCONS_00063658-exon-scaffold_397-1510915933:184506..184700Clytia hemisphaericaexon
TCONS_00063658-exon-scaffold_397-1510915933:183909..184074TCONS_00063658-exon-scaffold_397-1510915933:183909..184074Clytia hemisphaericaexon
TCONS_00063658-exon-scaffold_397-1510915933:183140..183401TCONS_00063658-exon-scaffold_397-1510915933:183140..183401Clytia hemisphaericaexon
TCONS_00063658-exon-scaffold_397-1491911889:184506..184700TCONS_00063658-exon-scaffold_397-1491911889:184506..184700Clytia hemisphaericaexon
TCONS_00063658-exon-scaffold_397-1491911889:183909..184074TCONS_00063658-exon-scaffold_397-1491911889:183909..184074Clytia hemisphaericaexon
TCONS_00063658-exon-scaffold_397-1491911889:183140..183401TCONS_00063658-exon-scaffold_397-1491911889:183140..183401Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_397supercontigscaffold_397:183140..184700 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.194057	0.094927	0.115565	0	0.99157	0.309432	0.288854	0.536689	0.434103	0.342434	19.1497	23.2016	4.57408	5.58755	3.98852	8.63776	0.728766	0.476626	0.0828548	0.121241	0	0	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001304C-type_lectin-like
IPR016186C-type_lectin-like/link
IPR018378C-type_lectin_CS
IPR016187CTDL_fold
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063658 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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