TCONS_00063657 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063657
Unique NameTCONS_00063657
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3208

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063657 ID=TCONS_00063657|Name=TCONS_00063657|organism=Clytia hemisphaerica|type=transcript|length=3208bp
AAAGGTTTAATTATGTACTTACTCACTTAGTTGGTAAGAAGCAAATAACC
AAATATGACAAGCACGTGATAATCTTTGTTTTCCCACACTTAAATCGCCg
ccattttgattgttttgcttCTACTGAAACTGAAAGGTCTGGGACCTACT
GGCATTCTTGGAATTCTACCTAGGCTTCTTTTTGCAAAGAGGCAAAAAAG
ACTAGGTCCGGGGTTGCGTGATTCGTAGAAATGGTAGCctcaatttgaaa
aacaaaagcaaaaaaattctgGTACGTTTGGTGGTCGTCCATGACTTTCA
CACCACAAAAGAAGgtctttttaaaatcatttttgacattttctggATTC
AGGTATGGCATATTTTCTTAGCACAGAGTTCGAAGCATTGAAACATGATG
TCAACAAGCTGTTTTCAAAGTTTCACGAAAAGCAGAGTGTaagatttgat
gatttttgtgaggaatggaaaaaattgaactttagTGCACTTTTCGGTGC
AACTTACAGAAATACTCCTGGTTCAAAAATGAGGATTGCTGAGCGACTTT
TTCGTATCGCTAGTGAATTTCTTTCGGAAGACTCTACTTTTTTATATAGA
GTTGCTGCTATTTACACGTTTTATGCTGTGTATTTCAAGCAAGTTACTCc
tgtgaaaacaaaaataagaatGACTCCTGCCATGTGGACCGACCTGATGC
AATTCACGGAAGTTTTAAAGAAGCATAGTCACTATGATGTTGTCTATATT
ATTCATGTTTTACGCAAGAGTAAGGCATTTTGCTTTACAGCGTTTCCCAA
AGAACTTTTTTTCGGTAAAATAGAGTTTATGCTCGGTGTTGAAGGCATAT
CTGGATTTAAGCATTCTCAAGAGCGCAGCGAGTATCTCACAGAGATTCTT
GATGATGAAAGGATTGTACCAAAGCTCCAAGCAATCCAGAATGATTATGC
TGCTATAAAAGAGAAATTGATTGCAGAATCTCAGGAGAATGAGCGAGAAG
ATTTATCAAAGGTTCTGTTTTACAttaatcaagattttcctgaagACGTT
TCTACAATGATTAACTCTTACAAGAGGAAGTATGATGATTCAATGACAAC
CTATCAATCAAACGACGAGGCAACTCAAAGACCTGTTTTAACACAACTTC
GAAAGATAAAAGAAACTACCACTGCTCCTACTACTACTATCATTACTGAC
AGTGATTCTCAAGCGGAAGATGAAACACGTGCAtccaagatttttaaatt
gaaagaaaagCTATGGTCTTCCAACATtcaagttgacaaaagtaaaGGCT
ATGAaattaaaaaggagaaaaaaaaattgtcagcattggaggaaagtatt
gcagaaaaagaaagagaaaaggaAGATAAGAGACATTATTACAAGAAAAG
TGCAATGTTACAAGTTAAATCAAAGGTTCCAGGATCAAAATCGAAAAGCA
AACATCCTTATATACGGTTTGAACTTCCCACTCAAGCAGATGTCTATGAA
CATTAGTTTTCaagaaagaatattttaatattGGTATTTTTAACATTTGA
CAATTGCAAAATATAACCTGGTTTTTATGAACTAAAAGCATATTTAAATA
TCTTGGattgattataaaaaaattgtactcTGTCTTAAATCTCTCATTTT
GGATCAAATACAGGACATCACATATTTTGTACATTCTACGGTATCATTAT
ATATACGATGAAAAGGATATGAGGCTGTCTATGTATAtggtgttgttttt
ttatatttcttaaaaatctagTTGCTTGTAtaagtttgttgtttgtgatg
TTGTAGTTGATGTTGTGTTGCTTCCAAGGATAAACCAATGGGCGCGGTAA
GCGTTTTTACGGCAGGGAACTACCACTGTCAATCTGGTGTGTTGTTTTTC
TGATGGTGTTTTTGCAACTGGTgttctttctttgaaaattcaatttttat
agaGATTTATGGGGGAGATGTCTGTTTCTGTTCAAtttaagtttttataa
aaatttgtttatataatgtatttatttttcagaaaaataaaaaaaccatc
aaaatggTCTTAAGAAAACCAAAACGATAAAACAGATGTGGATTCGCTAT
caaaagatatcttcaaagaTGGCTTCATTTGATCCAAGAGAATTAACCAA
GAATAAAGAAGAAACAATCAAGTACCCTTTAAAGAGATTTGAGACAACAT
TAGGAAAATCATTGCGCATTGTGATTCTCACAAATTTAGACCGTTTGAGA
AAACATAGAAGTAATATTGAAAAGTTTGCCAAtgaaagaagatggaaaga
tCTCAATATGGAACAAATAAATGCATCCAGGACTGTACAGCAATTGAAAG
CTACAATACGTGAATTAGACAAAGTAAAAGACCAATTGGTCGAAACTGAT
GTTAATGCTTTCAAAAAGCGAATTGAACCAACAAGAAATGAAGCACTTGA
GGCTATACAAGAATTCAGTCGGCTTTATGATGTTATTTCAAGACAAGTCC
AAGATTCTTTGCTGGAAGCTCAGAATGCTGAAGGTGATCTCGTTGAAGTG
CCATTACAATCACCACCAACATCACGAGGAAATTCACCACAGATCAACAC
ATTTGAAGAAGGATCTCTTATGGGAAATATACAAATAAGAGATAACCAAA
GGGAACATGAAGAAATTGCTGTTTGCCAATCATGGGATCATTTGAGAGAT
GGATTGGTTGAACTTAACTTACTTGTCAAGGATTTTGCTGTTGTTGTCCA
TAATCAACAAGAAATGGTGGATAATATTGAAGATAATATTGAAAAAGCCC
ATGAAAATGTTCGAGAGGGAACTGGGTTTTTGGCACAGGCCAGTAAATAT
AAAGCCGCTGCAATCCCAGTTGGTGGTGCCATTGTTGGTGGAATCATAGG
TGGACCCATCGGTTTAATGGCGGGTTTTAAACTAGCCGGTGTGGCTGCAG
CTGTTGGTGGAGGGATAGCTGGATACACAGgtggaaaatatttgaaaaac
aaacacGATGCCAGAGTTGAAATGGAAATGAGtaatttgagtaagaaaga
tgACGATTTTCAAAGAAGGTGATATTCATGTCATTACAATATTTTCCGGG
ATTATTTTGATTTGTGGTGAGTGATTAAGTCATGAATTGATAGAATGTAA
TTTTATCACATGGAATGTTATCTTGGAacatattttggaaattttttaaa
tatttaaa
Run BLAST on NCBI

protein sequence of TCONS_00063657-protein

>TCONS_00063657-protein ID=TCONS_00063657-protein|Name=TCONS_00063657-protein|organism=Clytia hemisphaerica|type=polypeptide|length=383bp
MAYFLSTEFEALKHDVNKLFSKFHEKQSVRFDDFCEEWKKLNFSALFGAT
YRNTPGSKMRIAERLFRIASEFLSEDSTFLYRVAAIYTFYAVYFKQVTPV
KTKIRMTPAMWTDLMQFTEVLKKHSHYDVVYIIHVLRKSKAFCFTAFPKE
LFFGKIEFMLGVEGISGFKHSQERSEYLTEILDDERIVPKLQAIQNDYAA
IKEKLIAESQENEREDLSKVLFYINQDFPEDVSTMINSYKRKYDDSMTTY
QSNDEATQRPVLTQLRKIKETTTAPTTTIITDSDSQAEDETRASKIFKLK
EKLWSSNIQVDKSKGYEIKKEKKKLSALEESIAEKEREKEDKRHYYKKSA
MLQVKSKVPGSKSKSKHPYIRFELPTQADVYEH
Run BLAST on NCBI

transcript from alignment at scaffold_397:140684..146350-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063657 ID=TCONS_00063657|Name=TCONS_00063657|organism=Clytia hemisphaerica|type=transcript|length=5667bp|location=Sequence derived from alignment at scaffold_397:140684..146350- (Clytia hemisphaerica)
AAAGGTTTAATTATGTACTTACTCACTTAGTTGGTAAGAAGCAAATAACC
AAATATGACAAGCACGTGATAATCTTTGTTTTCCCACACTTAAATCGCCG
CCATTTTGATTGTTTTGCTTCTACTGAAACTGAAAGGTCTGGGACCTACT
GGCATTCTTGGAATTCTACCTAGGCTTCTTTTTGCAAAGAGGCAAAAAAG
ACTAGGTCCGGGGTTGCGTGATTCGTAGAAATGGTAGCCTCAATTTGAAA
AACAAAAGCAAAAAAATTCTGGTACGTTTGGTGGTCGTCCATGACTTTCA
CACCACAAAAGAAGGTCTTTTTAAAATCATTTTTGACATTTTCTGGATTC
AGGTATGGCATATTTTCTTAGCACAGAGTTCGAAGCATTGAAACATGATG
TCAACAAGCTGTTTTCAAAGTTTCACGAAAAGCAGAGTGTAAGATTTGAT
GATTTTTGTGAGGAATGGAAAAAATTGAACTTTAGTGCACTTTTCGGTGC
AACTTACAGAAATACTCCTGGTTCAAAAATGAGGATTGCTGAGCGACTTT
TTCGTATCGCTAGTGAATTTCTTTCGGAAGACTCTACTTTTTTATATAGA
GTTGCTGCTATTTACACGTTTTATGCTGTGTATTTCAAGCAAGTTACTCC
TGTGAAAACAAAAATAAGAATGACTCCTGCCATGTGGACCGACCTGATGC
AATTCACGGAAGTTTTAAAGAAGCATAGTCACTATGATGTTGTCTATATT
ATTCATGTTTTACGCAAGAGTAAGGCATTTTGCTTTACAGCGTTTCCCAA
AGAACTTTTTTTCGGTAAAATAGAGTTTATGCTCGGTGTTGAAGGCATAT
CTGGATTTAAGCATTCTCAAGAGCGCAGCGAGTATCTCACAGAGATTCTT
GATGATGAAAGGATTGTACCAAAGCTCCAAGCAATCCAGAATGATTATGC
TGCTATAAAAGAGAAATTGATTGCAGAATCTCAGGAGAATGAGCGAGAAG
ATTTATCAAAGGTTCTGTTTTACATTAATCAAGATTTTCCTGAAGACGTT
TCTACAATGATTAACTCTTACAAGAGGAAGTATGATGATTCAATGACAAC
CTATCAATCAAACGACGAGGCAACTCAAAGACCTGTTTTAACACAACTTC
GAAAGATAAAAGAAACTACCACTGCTCCTACTACTACTATCATTACTGAC
AGTGATTCTCAAGCGGAAGATGAAACACGTGCATCCAAGATTTTTAAATT
GAAAGAAAAGCTATGGTCTTCCAACATTCAAGTTGACAAAAGTAAAGGCT
ATGAAATTAAAAAGGAGAAAAAAAAATTGTCAGCATTGGAGGAAAGTATT
GCAGAAAAAGAAAGAGAAAAGGAAGATAAGAGACATTATTACAAGAAAAG
TGCAATGTTACAAGTTAAATCAAAGGTTCCAGGATCAAAATCGAAAAGCA
AACATCCTTATATACGGTTTGAACTTCCCACTCAAGCAGATGTCTATGAA
CATTAGTTTTCAAGAAAGAATATTTTAATATTGGTATTTTTAACATTTGA
CAATTGCAAAATATAACCTGGTTTTTATGAACTAAAAGCATATTTAAATA
TCTTGGATTGATTATAAAAAAATTGTACTCTGTCTTAAATCTCTCATTTT
GGATCAAATACAGGACATCACATATTTTGTACATTCTACGGTATCATTAT
ATATACGATGAAAAGGATATGAGGCTGTCTATGTATATGGTGTTGTTTTT
TTATATTTCTTAAAAATCTAGTTGCTTGTATAAGTTTGTTGTTTGTGATG
TTGTAGTTGATGTTGTGTTGCTTCCAAGGATAAACCAATGGGCGCGGTAA
GCGTTTTTACGGCAGGGAACTACCACTGTCAATCTGGTGTGTTGTTTTTC
TGATGGTGTTTTTGCAACTGGTGTTCTTTCTTTGAAAATTCAATTTTTAT
AGAGATTTATGGGGGAGATGTCTGTTTCTGTTCAATTTAAGTTTTTATAA
AAATTTGTTTATATAATGTATTTATTTTTCAGAAAAATAAAAAAACCATC
AAAATGGTCTTAAGAAAACCAAAACGATAAAACAGATGTGGATTCGCTAT
CAAAAGATATCTTCAAAGATGGCTTCATTTGATCCAAGAGAATGTACCTT
TTTTTTCTGATAACTTATTTATATTCTGAGAATTATGGGTTACAGCCATA
CTTTAGGCGTACAAACTTTCGCGAGCAGAAACTTTCGCGATTTTCGCGAA
TTTTGGCCCTTTTCGCAAAAGTAAATGTCTTTTAAAATTCTAGGAAGGGC
CATTCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNCTGCTCGCGAAAAATATTTTTCTG
TTAAATTCGCGAAAGTAAATGTCGTGAATTTCGCGATTTTTCGTCCTCGC
GAAAGTTTCTGCTTGCGAAAGTTTCTGCTCGCGAAAGTTGTACGCCTAAA
GTAGTCATCTTCAGTACTTCTCAAACTCGCAATAGTATTGTTGAGAGTTT
ATCTGAACAATTTGAGACAATCCAAGACAATCGTTATGCTCAAAATTTTT
ACTGTGTTTTTTAATATAGCAATAGAAGATAGGAAAAAAGAATCTTCCAT
TGTATTAAAATACCAAAATTATATTCAATTCAATTTACTCAATACAAAAT
CTAACGTGACCAATAGATTAAGTTTGAGTAATTTAATTACAAATATTTTC
AGTACTTTTAAAAATGATTCAAATAATTACTATGAAACTTTTTAACAAAG
TTACTTTTTCAGATTTTAATTTTTGTATAATTTTCATTTCTTATTTTAGT
AACCAAGAATAAAGAAGAAACAATCAAGTACCCTTTAAAGAGATTTGAGA
CAACATTAGGAAAATCATTGCGCATTGTGATTCTCACAAATTTAGACCGT
TTGAGAAAACATAGAAGTAATATTGAAAAGGTAGTTCAAATCAAAAATAA
TAAACCGACACAATAGAGAACACCATGGTTCAAACCCATTCTCATTCGGG
GTTATCTTGTTTGAATATATATTGAATACAGTAAAACTTATTAAAAAATT
TCTAAAAAATATTCATTTACAAGGCTTATACACGATGTTAACATCACAGT
TACGCAATTAAGCATTTTACCTTATTCTAATTTATCCTTTTTTAACTTTT
AGGCTAGAAATTACAAATATTAGTCCCATTAAAGCATTTATGATTATAAT
TTAATTGAACTATGAGTAATGCATTATGTTTTTCTGACAGTTTGCCAATG
AAAGAAGATGGAAAGATCTCAATATGGAACAAATAAATGCATCCAGGACT
GTACAGGTTTATACAGGCCTTTATTTTCACTTTTGTTTTTAGAATTGTTG
AAATAAGACTGTGTAGCTAAATCTTTGTTTGCAAGTTACATTTTAAATTT
CACTAGACTCAGAGGATGGGAGGTCATCCCATCTAAAAGCTACCATATGT
GCAAACAAGGGTCTCAAAATCAAACCTTTACAATGCAGAGAAAATCAAGT
CAAATTTGCGTAAGTTTCATAAAAAAATTGACCCTAATAGTGCATTATTT
TGAAACTTTCTAAGGCAAAAAATGGTCAGATTGTCAAAATTTTGCCCGAA
ATACCTTGTTCTTGTCAATTTTTCACACTTACAGGGAAGCCTGAAAAGCT
AGGTTGCGACCAGACTAGATTTTATCAAAGTTAATCTTTGCAAAGTGTTA
ACAAAACAAAACTAAAATGAATCCTAAATAGGCTGTTTTGTCCTTATTTC
TAGCAATTGAAAGCTACAATACGTGAATTAGACAAAGTAAAAGACCAATT
GGTCGAAACTGATGTTAATGCTTTCAAAAAGCGAATTGAACCAACAAGAA
ATGAAGCACTTGAGGCTATACAAGAATTCAGTCGGCTTTATGATGTTATT
TCAAGACAAGTCCAAGATTCTTTGCTGGAAGCTCAGAATGGTTAGTATTG
TTAAAATTTTAAGATATCTTTAAATTGCTTTTTTCCACAGGTTAAACCTG
GTTAAACAATACTATTTTCAAATTTTCAAATTCCTGATTTGTCACATTCT
ATCTAATTAATGAAAAGTTTTCAAAAGTTGATTTTTTGTGATCAAGTCAT
TTTCGTCGTGCAAAATGACAAATTCCATTGCATTGAGTATTCTCTCTTTC
TAATAACTTTTCAAAGCTGAAGGTGATCTCGTTGAAGTGCCATTACAATC
ACCACCAACATCACGAGGAAATTCACCACAGATCAACACATTTGAAGAAG
GATCTCTTATGGGAAATATACAAATAAGAGATAACCAAAGGGAACATGAA
GAAATTGCTGTTTGCCAATCATGGGATCATTTGAGAGATGTAGGTCTCCC
TTCCCTGATTACCCTTTTGCAATGCCTACAGTAATGGAATATAACTTAAT
CCACAAGTGGATCTCCTCAAATTGTTTAAGAAATCGGTATTTCAAGGATC
CTTTTTTCTGTGATTTAAAGAAAAAGTGAAATGTATATTTATCAATTTTA
TTAATTTTATCTTGCAGGGATTGGTTGAACTTAACTTACTTGTCAAGGAT
TTTGCTGTTGTTGTCCATGTAAGAATATGTCAATCTCACTGTAAATAAAT
ATAAAAAAGTGCTCGCCTACTGTAAAATAAATTTCTGTATAGAAAAAATC
ATGGTGAAAAAAAAATTAACTGAAGTTTTTTTCACCATGTAATATGAAAA
TCTCACGACAGTAAAAGTATACGATGATTTGTTCATTTGAAAGTATCGAA
ATCTGTGGAATAATCCAGGATAAAATCATACTTTTGTGCAGTGAGAAGTG
ATAAATTATTTTATTTATTCAATTGTAGAATCAACAAGAAATGGTGGATA
ATATTGAAGATAATATTGAAAAAGCCCATGAAAATGTTCGAGAGGGAACT
GGGTTTTTGGCACAGGTTTGGATTTTTTAGTTTTATCTCAAAGAAAAGCC
ACTTTATTATAACATTTCCTAAATTCTACTCCCTTTTTTTAGGCTAATCC
TGTATTATCTAGTAAACCCAAATTAAATGTACATACAAAAAGTATTAGTT
TAAGTTAAAATTAACATAATTAGGTCTTATGAAAATATGAAATTTTAACT
TGATCGATTGGCTGCAATAATTGATAATCTGATGATTATATTTTCAGGCC
AGTAAATATAAAGCCGCTGCAATCCCAGTTGGTGGTGCCATTGTTGGTGG
AATCATAGGTGGACCCATCGGTTTAATGGCGGGTTTTAAACTAGCCGGTG
TGGCTGCAGCTGTTGGTGGAGGGATAGCTGGATACACAGGTGGAAAATAT
TTGAAAAACAAACACGATGCCAGAGTTGAAATGGAAATGAGTAATTTGAG
TAAGAAAGATGACGATTTTCAAAGAAGGTGATATTCATGTCATTACAATA
TTTTCCGGGATTATTTTGATTTGTGGTGAGTGATTAAGTCATGAATTGAT
AGAATGTAATTTTATCACATGGAATGTTATCTTGGAACATATTTTGGAAA
TTTTTTAAATATTTAAA

Coding sequence (CDS) from alignment at scaffold_397:140684..146350-

>TCONS_00063657 ID=TCONS_00063657|Name=TCONS_00063657|organism=Clytia hemisphaerica|type=CDS|length=1152bp|location=Sequence derived from alignment at scaffold_397:140684..146350- (Clytia hemisphaerica)
ATGGCATATTTTCTTAGCACAGAGTTCGAAGCATTGAAACATGATGTCAA
CAAGCTGTTTTCAAAGTTTCACGAAAAGCAGAGTGTAAGATTTGATGATT
TTTGTGAGGAATGGAAAAAATTGAACTTTAGTGCACTTTTCGGTGCAACT
TACAGAAATACTCCTGGTTCAAAAATGAGGATTGCTGAGCGACTTTTTCG
TATCGCTAGTGAATTTCTTTCGGAAGACTCTACTTTTTTATATAGAGTTG
CTGCTATTTACACGTTTTATGCTGTGTATTTCAAGCAAGTTACTCCTGTG
AAAACAAAAATAAGAATGACTCCTGCCATGTGGACCGACCTGATGCAATT
CACGGAAGTTTTAAAGAAGCATAGTCACTATGATGTTGTCTATATTATTC
ATGTTTTACGCAAGAGTAAGGCATTTTGCTTTACAGCGTTTCCCAAAGAA
CTTTTTTTCGGTAAAATAGAGTTTATGCTCGGTGTTGAAGGCATATCTGG
ATTTAAGCATTCTCAAGAGCGCAGCGAGTATCTCACAGAGATTCTTGATG
ATGAAAGGATTGTACCAAAGCTCCAAGCAATCCAGAATGATTATGCTGCT
ATAAAAGAGAAATTGATTGCAGAATCTCAGGAGAATGAGCGAGAAGATTT
ATCAAAGGTTCTGTTTTACATTAATCAAGATTTTCCTGAAGACGTTTCTA
CAATGATTAACTCTTACAAGAGGAAGTATGATGATTCAATGACAACCTAT
CAATCAAACGACGAGGCAACTCAAAGACCTGTTTTAACACAACTTCGAAA
GATAAAAGAAACTACCACTGCTCCTACTACTACTATCATTACTGACAGTG
ATTCTCAAGCGGAAGATGAAACACGTGCATCCAAGATTTTTAAATTGAAA
GAAAAGCTATGGTCTTCCAACATTCAAGTTGACAAAAGTAAAGGCTATGA
AATTAAAAAGGAGAAAAAAAAATTGTCAGCATTGGAGGAAAGTATTGCAG
AAAAAGAAAGAGAAAAGGAAGATAAGAGACATTATTACAAGAAAAGTGCA
ATGTTACAAGTTAAATCAAAGGTTCCAGGATCAAAATCGAAAAGCAAACA
TCCTTATATACGGTTTGAACTTCCCACTCAAGCAGATGTCTATGAACATT
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039899XLOC_039899Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063657-exon-scaffold_397-1575043694:144208..146350TCONS_00063657-exon-scaffold_397-1575043694:144208..146350Clytia hemisphaericaexon
TCONS_00063657-exon-scaffold_397-1575043694:143271..143401TCONS_00063657-exon-scaffold_397-1575043694:143271..143401Clytia hemisphaericaexon
TCONS_00063657-exon-scaffold_397-1575043694:142895..142960TCONS_00063657-exon-scaffold_397-1575043694:142895..142960Clytia hemisphaericaexon
TCONS_00063657-exon-scaffold_397-1575043694:142261..142447TCONS_00063657-exon-scaffold_397-1575043694:142261..142447Clytia hemisphaericaexon
TCONS_00063657-exon-scaffold_397-1575043694:141862..142034TCONS_00063657-exon-scaffold_397-1575043694:141862..142034Clytia hemisphaericaexon
TCONS_00063657-exon-scaffold_397-1575043694:141633..141683TCONS_00063657-exon-scaffold_397-1575043694:141633..141683Clytia hemisphaericaexon
TCONS_00063657-exon-scaffold_397-1575043694:141286..141372TCONS_00063657-exon-scaffold_397-1575043694:141286..141372Clytia hemisphaericaexon
TCONS_00063657-exon-scaffold_397-1575043694:140684..141053TCONS_00063657-exon-scaffold_397-1575043694:140684..141053Clytia hemisphaericaexon
TCONS_00063657-exon-scaffold_397-1510915933:144208..146350TCONS_00063657-exon-scaffold_397-1510915933:144208..146350Clytia hemisphaericaexon
TCONS_00063657-exon-scaffold_397-1510915933:143271..143401TCONS_00063657-exon-scaffold_397-1510915933:143271..143401Clytia hemisphaericaexon
TCONS_00063657-exon-scaffold_397-1510915933:142895..142960TCONS_00063657-exon-scaffold_397-1510915933:142895..142960Clytia hemisphaericaexon
TCONS_00063657-exon-scaffold_397-1510915933:142261..142447TCONS_00063657-exon-scaffold_397-1510915933:142261..142447Clytia hemisphaericaexon
TCONS_00063657-exon-scaffold_397-1510915933:141862..142034TCONS_00063657-exon-scaffold_397-1510915933:141862..142034Clytia hemisphaericaexon
TCONS_00063657-exon-scaffold_397-1510915933:141633..141683TCONS_00063657-exon-scaffold_397-1510915933:141633..141683Clytia hemisphaericaexon
TCONS_00063657-exon-scaffold_397-1510915933:141286..141372TCONS_00063657-exon-scaffold_397-1510915933:141286..141372Clytia hemisphaericaexon
TCONS_00063657-exon-scaffold_397-1510915933:140684..141053TCONS_00063657-exon-scaffold_397-1510915933:140684..141053Clytia hemisphaericaexon
TCONS_00063657-exon-scaffold_397-1491911889:144208..146350TCONS_00063657-exon-scaffold_397-1491911889:144208..146350Clytia hemisphaericaexon
TCONS_00063657-exon-scaffold_397-1491911889:143271..143401TCONS_00063657-exon-scaffold_397-1491911889:143271..143401Clytia hemisphaericaexon
TCONS_00063657-exon-scaffold_397-1491911889:142895..142960TCONS_00063657-exon-scaffold_397-1491911889:142895..142960Clytia hemisphaericaexon
TCONS_00063657-exon-scaffold_397-1491911889:142261..142447TCONS_00063657-exon-scaffold_397-1491911889:142261..142447Clytia hemisphaericaexon
TCONS_00063657-exon-scaffold_397-1491911889:141862..142034TCONS_00063657-exon-scaffold_397-1491911889:141862..142034Clytia hemisphaericaexon
TCONS_00063657-exon-scaffold_397-1491911889:141633..141683TCONS_00063657-exon-scaffold_397-1491911889:141633..141683Clytia hemisphaericaexon
TCONS_00063657-exon-scaffold_397-1491911889:141286..141372TCONS_00063657-exon-scaffold_397-1491911889:141286..141372Clytia hemisphaericaexon
TCONS_00063657-exon-scaffold_397-1491911889:140684..141053TCONS_00063657-exon-scaffold_397-1491911889:140684..141053Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063657-proteinTCONS_00063657-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_397supercontigscaffold_397:140684..146350 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
18.8448	18.431	36.0131	37.5954	19.439	14.6451	17.4717	18.9053	13.9998	12.9868	13.2751	12.7639	13.7574	13.5824	17.9008	16.8952	18.0299	19.932	19.6758	18.1816	23.9486	20.5061	24.5186	23.0109	19.8079	22.9142	23.046	19.4554	18.2125	18.0947
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019188SNAPc_SNAP43
Blast
[Close]
BLAST of TCONS_00063657 vs. Swiss-Prot (Human)
Match: STX17 (Syntaxin-17 OS=Homo sapiens GN=STX17 PE=1 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 2.136e-33
Identity = 88/229 (38.43%), Postives = 134/229 (58.52%), Query Frame = 1 
Query: 2170 KYPLKRFETTLGKSLRIVILTNLDRLRKHRSNIEKFANERRWKDLNMEQINASRTVQQLKATIRELDKVKDQLVETDVNAFKKRIEPTRNEALEAIQEFSRLYDVISRQVQDSLLEAQNAEGDLVEVPLQSPPTSRGNSPQINTFE-EGSLMGNIQIRDNQREHEEIAVCQSWDHLRDGLVELNLLVKDFAVVVHNQQEMVDNIEDNIEKAHENVREGTGFLAQASKYK 2853
            K  L+R E  + K ++IVI T+L+RLRKH+ NIEK+   R W  L+ E INA RTVQQL++ IRE++K+  ++ + D+   K+ I+P + EA  A  EF +L+     +  + L +  N E  L++ PL    T  G     +T E E S     QI       ++    +SW+ L   L+EL+ LV DF+++V++QQE +D+I D++  A  NV EGT  L +A+KYK
Sbjct:    7 KVKLRRLEPAIQKFIKIVIPTDLERLRKHQINIEKYQRCRIWDKLHEEHINAGRTVQQLRSNIREIEKLCLKVRKDDLVLLKRMIDPVKEEASAATAEFLQLH----LESVEELKKQFNDEETLLQPPLTRSMTVGG---AFHTTEAEASSQSLTQIYALPEIPQDQNAAESWETLEADLIELSQLVTDFSLLVNSQQEKIDSIADHVNSAAVNVEEGTKNLGKAAKYK 228
The following BLAST results are available for this feature:
BLAST of TCONS_00063657 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
STX172.136e-3338.43Syntaxin-17 OS=Homo sapiens GN=STX17 PE=1 SV=2[more]
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