TCONS_00063648 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063648
Unique NameTCONS_00063648
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length647

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063648 ID=TCONS_00063648|Name=TCONS_00063648|organism=Clytia hemisphaerica|type=transcript|length=647bp
AAGTGGATGTTTTCCATGATGGTGCACGAGCCTTTCTGCAAAAGGCTTTC
AAGTACGCTCGTAACAACTTACCAATAAACGATCCAGTTTTTCTTAATGC
AAAAGTTCTAAACTTCCACGAAAGAAGAGGTGACTCAGTCAACGTAGACC
AACTAAAATTCTTCATTGACAGACATCCCTCTCTACTTGGGCACTTTAAT
GATCCTCTCGAATTTGATCTGCTTCGAACCGAATTCCATCTTTACTAACT
TTTAAATGATAGAGATATTCCGGATTGTGTATGGGCAAAGGTGAAAACCA
AGGAAGGAACGATCTTCCTCGACCAATTATGCTTTCACATCGGTACTATG
AAAAATCCGGATGGAACTGATCGTTTTGCCAAACTTTTCGAGGTTGCCAA
GCTCATCCTTGTTATTCCTCACTCGAATGCTGCTGAAGAATGCATCTTCT
CTCAAGTGAAGAAGAACAAGACAGCATTTCGTTCCTCACTGAACCTGGAT
GAATCTTTGGCCGGGATAATAACAGCTAAATTAGTTATAGCTGacaaaaa
cattccaaaaatgGATTTTGATGACGAGCTGCTTAAGTTGGCTAAAACAG
CTACAATGAAATATAACAGAGCTCATTCCAAAGCTCATGCAAATCGG
Run BLAST on NCBI

protein sequence of TCONS_00063648-protein

>TCONS_00063648-protein ID=TCONS_00063648-protein|Name=TCONS_00063648-protein|organism=Clytia hemisphaerica|type=polypeptide|length=100bp
MKNPDGTDRFAKLFEVAKLILVIPHSNAAEECIFSQVKKNKTAFRSSLNL
DESLAGIITAKLVIADKNIPKMDFDDELLKLAKTATMKYNRAHSKAHANR
Run BLAST on NCBI

transcript from alignment at scaffold_397:304057..304951+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063648 ID=TCONS_00063648|Name=TCONS_00063648|organism=Clytia hemisphaerica|type=transcript|length=895bp|location=Sequence derived from alignment at scaffold_397:304057..304951+ (Clytia hemisphaerica)
AAGTGGATGTTTTCCATGATGGTGCACGAGCCTTTCTGCAAAAGGCTTTC
AAGTACGCTCGTAACAACTTACCAATAAACGATCCAGTTTTTCTTAATGC
AAAAGTTCTAAACTTCCACGAAAGAAGAGGTGACTCAGTCAACGTAGACC
AACTAAAATTCTTCATTGACAGGTAGATAAATAATTACtactcaaatttt
gattttacacTCAATGTGTAAATGATTATATCTTCCGTACTGAATCACTT
ATTATCACAGATTATCAATAACATAAGCACACACGTAGCTACTTCTTCAA
AAATGATTATTCTTTAAAGGCGCCGATACGTTCGGAAAGGCTGCCACGAA
TTGGGCGCGATCTTATTAATGAATAGTCTTGAAATGTAGTCTTGAAAATC
TTTCCCTTCTTTTGTTTCAGACATCCCTCTCTACTTGGGCACTTTAATGA
TCCTCTCGAATTTGATCTGCTTCGAACCGAATTCCATCTTTACTAACTTT
TAAATGATAGAGATATTCCGGATTGTGTATGGGCAAAGGTGAAAACCAAG
GAAGGAACGATCTTCCTCGACCAATTATGCTTTCACATCGGTACTATGAA
AAATCCGGATGGAACTGATCGTTTTGCCAAACTTTTCGAGGTTGCCAAGC
TCATCCTTGTTATTCCTCACTCGAATGCTGCTGAAGAATGCATCTTCTCT
CAAGTGAAGAAGAACAAGACAGCATTTCGTTCCTCACTGAACCTGGATGA
ATCTTTGGCCGGGATAATAACAGCTAAATTAGTTATAGCTGacaaaaaca
ttccaaaaatgGATTTTGATGACGAGCTGCTTAAGTTGGCTAAAACAGCT
ACAATGAAATATAACAGAGCTCATTCCAAAGCTCATGCAAATCGG

Coding sequence (CDS) from alignment at scaffold_397:304057..304951+

>TCONS_00063648 ID=TCONS_00063648|Name=TCONS_00063648|organism=Clytia hemisphaerica|type=CDS|length=300bp|location=Sequence derived from alignment at scaffold_397:304057..304951+ (Clytia hemisphaerica)
ATGAAAAATCCGGATGGAACTGATCGTTTTGCCAAACTTTTCGAGGTTGC
CAAGCTCATCCTTGTTATTCCTCACTCGAATGCTGCTGAAGAATGCATCT
TCTCTCAAGTGAAGAAGAACAAGACAGCATTTCGTTCCTCACTGAACCTG
GATGAATCTTTGGCCGGGATAATAACAGCTAAATTAGTTATAGCTGacaa
aaacattccaaaaatgGATTTTGATGACGAGCTGCTTAAGTTGGCTAAAA
CAGCTACAATGAAATATAACAGAGCTCATTCCAAAGCTCATGCAAATCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039894XLOC_039894Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063648-proteinTCONS_00063648-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063648-exon-scaffold_397-1491911889:304057..304228TCONS_00063648-exon-scaffold_397-1491911889:304057..304228Clytia hemisphaericaexon
TCONS_00063648-exon-scaffold_397-1510915933:304057..304228TCONS_00063648-exon-scaffold_397-1510915933:304057..304228Clytia hemisphaericaexon
TCONS_00063648-exon-scaffold_397-1575043694:304057..304228TCONS_00063648-exon-scaffold_397-1575043694:304057..304228Clytia hemisphaericaexon
TCONS_00063648-exon-scaffold_397-1491911889:304477..304951TCONS_00063648-exon-scaffold_397-1491911889:304477..304951Clytia hemisphaericaexon
TCONS_00063648-exon-scaffold_397-1510915933:304477..304951TCONS_00063648-exon-scaffold_397-1510915933:304477..304951Clytia hemisphaericaexon
TCONS_00063648-exon-scaffold_397-1575043694:304477..304951TCONS_00063648-exon-scaffold_397-1575043694:304477..304951Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_397supercontigscaffold_397:304057..304951 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.091597
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008906HATC_C_dom
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046983 protein dimerization activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063648 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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