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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063647 ID=TCONS_00063647|Name=TCONS_00063647|organism=Clytia hemisphaerica|type=transcript|length=856bp
TGCGCCATTTTTAATGGCTGATACCTTATCACCTGTAATTAAAACATCCT
TCACCGATTCAAAAGTGGCACAGTCATATTCATCTGGTCGTACTAAAAGC
ACACAAATGATCAACACTGCATTAAAACCATATTTCAAATCTAAACTTGT
TAATCAAATGAAGCAAGGGCCATATGCATTATGCACAGATGGATCAAATG
CCGAAGGGCTATTCAAATTGAATCCTTTACTGGTCCGAGTTTTTTATATA
AATGAGAGGAAGGTTGTGTCTCAGCTTCTTGACATGTGTACCTCAAAGAA
GAACGATGCTGAAAACCTCTTCAATTTAATTGACGATGCGATAGAACAGA
ATTGTATGGACTGGAACCACTGTGTAGCAATAGGAATGGACAATACTTCT
GTCAACATGGGAGTACGCAACTCCATCAAATCAAgagttttgaagaaaaa
ttcttcaATTCATGTCAATGACTGTCCTTGTCACATTGTCCATAACACAG
CTGGCAATGGAGCAGAGGACTGCACTGCAGTCACATCATTCGATATTGAG
GATTTTCTTGTTGATCTATATCATTATTTTGACAAAAGCTCAAAACGAAA
AGTGACTCTTGAagagtttttcttgttttgtgaGCAAGAATACAAGAAAA
TCATCAAGTATGTATCGACAAGATGGCTCTCCCTAGAAGCTGCTGTCACA
AGGTCCTTAAAGATTCATCCCTCCTTAAAATCTTACTTTCTCAGTGCTGA
TGATGAAACCGGACCACGCTTCCATCGACTTGTTCAACATTATTCTGGAA
CAATGTTAGAGGTTCAcctgtttttctttcaaagcgtccttcaaactttc
attcgc Run BLAST on NCBI protein sequence of TCONS_00063647-protein >TCONS_00063647-protein ID=TCONS_00063647-protein|Name=TCONS_00063647-protein|organism=Clytia hemisphaerica|type=polypeptide|length=285bp
APFLMADTLSPVIKTSFTDSKVAQSYSSGRTKSTQMINTALKPYFKSKLV
NQMKQGPYALCTDGSNAEGLFKLNPLLVRVFYINERKVVSQLLDMCTSKK
NDAENLFNLIDDAIEQNCMDWNHCVAIGMDNTSVNMGVRNSIKSRVLKKN
SSIHVNDCPCHIVHNTAGNGAEDCTAVTSFDIEDFLVDLYHYFDKSSKRK
VTLEEFFLFCEQEYKKIIKYVSTRWLSLEAAVTRSLKIHPSLKSYFLSAD
DETGPRFHRLVQHYSGTMLEVHLFFFQSVLQTFIR Run BLAST on NCBI transcript from alignment at scaffold_397:302605..303661+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063647 ID=TCONS_00063647|Name=TCONS_00063647|organism=Clytia hemisphaerica|type=transcript|length=1057bp|location=Sequence derived from alignment at scaffold_397:302605..303661+ (Clytia hemisphaerica)
TGCGCCATTTTTAATGGCTGATACCTTATCACCTGTAATTAAAACATCCT
TCACCGATTCAAAAGTGGCACAGTCATATTCATCTGGTCGTACTAAAAGC
ACACAAATGATCAACACTGCATTAAAACCATATTTCAAGTGAGTGTATTT
TAATCTTGTTTTTTCCATAATCAATGGAAATTTAGGTTGCTATAGTTcta
gaaaattttaataaaagctCTTGAAAATCTACAGTCCGTCTCAGGGTTAC
ATCTCACCATCATCCAAAATGAGAGAGTAACCCTAAAGAACATTGATTTG
TGTGTCATGTGTAACGGTCTTTCAATATTGTCTTTACAGATCTAAACTTG
TTAATCAAATGAAGCAAGGGCCATATGCATTATGCACAGATGGATCAAAT
GCCGAAGGGCTATTCAAATTGAATCCTTTACTGGTCCGAGTTTTTTATAT
AAATGAGAGGAAGGTTGTGTCTCAGCTTCTTGACATGTGTACCTCAAAGA
AGAACGATGCTGAAAACCTCTTCAATTTAATTGACGATGCGATAGAACAG
AATTGTATGGACTGGAACCACTGTGTAGCAATAGGAATGGACAATACTTC
TGTCAACATGGGAGTACGCAACTCCATCAAATCAAgagttttgaagaaaa
attcttcaATTCATGTCAATGACTGTCCTTGTCACATTGTCCATAACACA
GCTGGCAATGGAGCAGAGGACTGCACTGCAGTCACATCATTCGATATTGA
GGATTTTCTTGTTGATCTATATCATTATTTTGACAAAAGCTCAAAACGAA
AAGTGACTCTTGAagagtttttcttgttttgtgaGCAAGAATACAAGAAA
ATCATCAAGTATGTATCGACAAGATGGCTCTCCCTAGAAGCTGCTGTCAC
AAGGTCCTTAAAGATTCATCCCTCCTTAAAATCTTACTTTCTCAGTGCTG
ATGATGAAACCGGACCACGCTTCCATCGACTTGTTCAACATTATTCTGGA
ACAATGTTAGAGGTTCAcctgtttttctttcaaagcgtccttcaaacttt
cattcgc Coding sequence (CDS) from alignment at scaffold_397:302605..303661+ >TCONS_00063647 ID=TCONS_00063647|Name=TCONS_00063647|organism=Clytia hemisphaerica|type=CDS|length=1710bp|location=Sequence derived from alignment at scaffold_397:302605..303661+ (Clytia hemisphaerica)
GCGCCATTTTTAATGGCTGATACCTTATCACCTGTAATTAAAACATCCTT
CACCGATTCAAAAGTGGCACAGTCATATTCATCTGGTCGTACTAAAAGCA
CACAAATGATCAACACTGCATTAAAACCATATTTCAAATCTAAACTTGTT
AATCAAATGAAGCAAGGGCCATATGCATTATGCACAGATGGATCAAATGC
CGAAGGGCTATTCAAATTGAATCCTTTACTGGTCCGAGTTTTTTATATAA
ATGAGAGGAAGGTTGTGTCTCAGCTTCTTGACATGTGTACCTCAAAGAAG
AACGATGCTGAAAACCTCTTCAATTTAATTGACGATGCGATAGAACAGAA
TTGTATGGACTGGAACCACTGTGTAGCAATAGGAATGGACAATACTTCTG
TCAACATGGGAGTACGCAACTCCATCAAATCAAgagttttgaagaaaaat
tcttcaATTCATGTCAATGACTGTCCTTGTCACATTGTCCATAACACAGC
TGGCAATGGAGCAGAGGACTGCACTGCAGTCACATCATTCGATATTGAGG
ATTTTCTTGTTGATCTATATCATTATTTTGACAAAAGCTCAAAACGAAAA
GTGACTCTTGAagagtttttcttgttttgtgaGCAAGAATACAAGAAAAT
CATCAAGTATGTATCGACAAGATGGCTCTCCCTAGAAGCTGCTGTCACAA
GGTCCTTAAAGATTCATCCCTCCTTAAAATCTTACTTTCTCAGTGCTGAT
GATGAAACCGGACCACGCTTCCATCGACTTGTTCAACATTATTCTGGAAC
AATGTTAGAGGTTCAcctgtttttctttcaaagcgtccttcaaactttca
ttcgcGCGCCATTTTTAATGGCTGATACCTTATCACCTGTAATTAAAACA
TCCTTCACCGATTCAAAAGTGGCACAGTCATATTCATCTGGTCGTACTAA
AAGCACACAAATGATCAACACTGCATTAAAACCATATTTCAAATCTAAAC
TTGTTAATCAAATGAAGCAAGGGCCATATGCATTATGCACAGATGGATCA
AATGCCGAAGGGCTATTCAAATTGAATCCTTTACTGGTCCGAGTTTTTTA
TATAAATGAGAGGAAGGTTGTGTCTCAGCTTCTTGACATGTGTACCTCAA
AGAAGAACGATGCTGAAAACCTCTTCAATTTAATTGACGATGCGATAGAA
CAGAATTGTATGGACTGGAACCACTGTGTAGCAATAGGAATGGACAATAC
TTCTGTCAACATGGGAGTACGCAACTCCATCAAATCAAgagttttgaaga
aaaattcttcaATTCATGTCAATGACTGTCCTTGTCACATTGTCCATAAC
ACAGCTGGCAATGGAGCAGAGGACTGCACTGCAGTCACATCATTCGATAT
TGAGGATTTTCTTGTTGATCTATATCATTATTTTGACAAAAGCTCAAAAC
GAAAAGTGACTCTTGAagagtttttcttgttttgtgaGCAAGAATACAAG
AAAATCATCAAGTATGTATCGACAAGATGGCTCTCCCTAGAAGCTGCTGT
CACAAGGTCCTTAAAGATTCATCCCTCCTTAAAATCTTACTTTCTCAGTG
CTGATGATGAAACCGGACCACGCTTCCATCGACTTGTTCAACATTATTCT
GGAACAATGTTAGAGGTTCAcctgtttttctttcaaagcgtccttcaaac
tttcattcgc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063647-exon-scaffold_397-1491911889:302605..302742 | TCONS_00063647-exon-scaffold_397-1491911889:302605..302742 | Clytia hemisphaerica | exon |
| TCONS_00063647-exon-scaffold_397-1510915933:302605..302742 | TCONS_00063647-exon-scaffold_397-1510915933:302605..302742 | Clytia hemisphaerica | exon |
| TCONS_00063647-exon-scaffold_397-1575043694:302605..302742 | TCONS_00063647-exon-scaffold_397-1575043694:302605..302742 | Clytia hemisphaerica | exon |
| TCONS_00063647-exon-scaffold_397-1491911889:302944..303661 | TCONS_00063647-exon-scaffold_397-1491911889:302944..303661 | Clytia hemisphaerica | exon |
| TCONS_00063647-exon-scaffold_397-1510915933:302944..303661 | TCONS_00063647-exon-scaffold_397-1510915933:302944..303661 | Clytia hemisphaerica | exon |
| TCONS_00063647-exon-scaffold_397-1575043694:302944..303661 | TCONS_00063647-exon-scaffold_397-1575043694:302944..303661 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_397 | supercontig | scaffold_397:302605..303661 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012337 | RNaseH-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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