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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063639 ID=TCONS_00063639|Name=TCONS_00063639|organism=Clytia hemisphaerica|type=transcript|length=1149bp
CAACAGTCTTTCAAAAGAACATTCCACAGCTTTGGAATAGATACTGTATG
TGTACCCTATGCAGACCATGAAAGGTACCTACTGTGAgaataaagtaaca
tttttCATGTTCTGGAGGTCAAATTTAGAGAAATTGTTGGAGCGTATTAA
TAAGCATTTTATAAGCAAGAGTCGTTGAAATGCTCTCATCCGAAAAGTTT
CTACTCCTAGCTACAACCCTGTTGGCTCTCAGTGACGTAATCTGGACAAG
ACCTACACTCGAGttcattttgattggtcgaaataTGCGTTCGAATTATA
TTGAATACCAAAGAAAAACAGTCAAACACATAGAGGAATGTTTTATGAGT
TGCCAACACGATGATTATTGTAACTCGGTGATCATCAAACCCAAAACGGT
TTCACTGGATTATTTCGGATTCAAAGAATGTCAGTTTTATGATCGTTATT
TCAAAGAAGAAGATTTGATCGAGGACGGGAGTATTGTAAATGAAATTTAT
GTTGTTAATTATTAGGGTGTATTTTTCTTACTAGTTTCTCTGCTAAtata
ataccttatcgggggaaaaaatgtcggagttttatttcgtcggggaaaaa
tttcgtcacctagaggcattttcgtcactttccccttaccaaaatttcaa
attcgtcacttttccccgacgaaatttacaatttagtcactttcacccaa
ctaagttgtccaaatgaaatggtagCTTGAAAATAGATCTTATAATTCGA
TGTtcaaagcactaatttcggttaataaaggtgtacaaaatttagatttt
aattttgattggggtaaaattgggtaaaagttctggtcggggataaaaaa
atcgggtaaagttttggtcgggtgataacaTATCCCCTAAAAAATCatcc
cctcaaaattttcgtcactttcctccgacatttttttccccgataaggta
cacgtttttttggtACCTTAAACTAGTGTTAGTCATCTGAGCAATGTTTC
GACCAGAGAATTGACAAAATTAATTAGGGAAGAAATCTTGAGCGGAatga
aaatttggcggatttagccaaaatctaccaaattaagttcccgccaaata
tAAATTTTTCCACCATCCACCAAATTTAAATTGTTGTATTCATTCTCCC Run BLAST on NCBI protein sequence of TCONS_00063639-protein >TCONS_00063639-protein ID=TCONS_00063639-protein|Name=TCONS_00063639-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
MLSSEKFLLLATTLLALSDVIWTRPTLEFILIGRNMRSNYIEYQRKTVKH
IEECFMSCQHDDYCNSVIIKPKTVSLDYFGFKECQFYDRYFKEEDLIEDG
SIVNEIYVVNY Run BLAST on NCBI transcript from alignment at scaffold_397:135461..137269+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063639 ID=TCONS_00063639|Name=TCONS_00063639|organism=Clytia hemisphaerica|type=transcript|length=1809bp|location=Sequence derived from alignment at scaffold_397:135461..137269+ (Clytia hemisphaerica)
CAACAGTCTTTCAAAAGAACATTCCACAGCTTTGGAATAGATACTGTATG
TGTACCCTATGCAGACCATGAAAGGTACCTACTGTGAgaataaagtaaca
tttttCATGTTCTGGAGGTCAAATTTAGAGAAATTGTTGGAGCGTATTAA
TAAGCATTTTATAAGCAAGAGTCGTTGAAATGGTAAGGCCAATTTTATCT
GATAATCCCTTTATATATCTACAGTAGGCTGGTGAAAATTGGTTTTTGAG
AGTAGCATTGAAAGGttagaaagaaattcaaaaaatgttctaCTCTAAAA
CAAAGAAACCACCACTAAgttcaaaattttacttttcttcCCCATTTGAT
TTGGAAGATTCACTTTAGCCAATCAGGATTACCTTCATTGATTGAAAAGG
GCCAGATTGTGGGGGTTAATTTAAAGGTCGGGTATCCAGGCAGGGTACTG
GGACGTGGCGCTGGTTAGGGTCCCTCTTTTAGGCTCGGAAGATATCTGAT
AGGGTTCCAAACTTACtaattaattttcaagatgtgtatctggcAGGATc
aacttttggttatttttgaaaatttcagggtGGAGATTAgaaatttttgt
tcaatttttcgttTACTTTAATCTATACTTGCaccactttttcacttttt
gacgTCACTGATGGACGTTAGTACCTTTTGTGATCGctatcaaaatcaca
aaaagggCGAGCTAAGGgaagggactgggttcgaggtCATTCTTGGGAAT
ATCAAAAGGTATTTCTGGAAATGACCGGAATTTCTCCAAAGCTTTAACTA
AATTTGATAACGAGTTAAAGAATGTTTCTTTTCTCATTTCAGCTCTCATC
CGAAAAGTTTCTACTCCTAGCTACAACCCTGTTGGCTCTCAGTGACGTAA
TCTGGACAAGACCTACACTCGAGttcattttgattggtcgaaataTGCGT
TCGAATTATATTGAATACCAAAGAAAAACAGTCAAACACATAGAGGAATG
TTTTATGAGTTGCCAACACGATGATTATTGTAACTCGGTGATCATCAAAC
CCAAAACGGTTTCACTGGATTATTTCGGATTCAAAGAATGTCAGTTTTAT
GATCGTTATTTCAAAGAAGAAGATTTGATCGAGGACGGGAGTATTGTAAA
TGAAATTTATGTTGTTAATTATTAGGGTGTATTTTTCTTACTAGTTTCTC
TGCTAAtataataccttatcgggggaaaaaatgtcggagttttatttcgt
cggggaaaaatttcgtcacctagaggcattttcgtcactttccccttacc
aaaatttcaaattcgtcacttttccccgacgaaatttacaatttagtcac
tttcacccaactaagttgtccaaatgaaatggtagCTTGAAAATAGATCT
TATAATTCGATGTtcaaagcactaatttcggttaataaaggtgtacaaaa
tttagattttaattttgattggggtaaaattgggtaaaagttctggtcgg
ggataaaaaaatcgggtaaagttttggtcgggtgataacaTATCCCCTAA
AAAATCatcccctcaaaattttcgtcactttcctccgacatttttttccc
cgataaggtacacgtttttttggtACCTTAAACTAGTGTTAGTCATCTGA
GCAATGTTTCGACCAGAGAATTGACAAAATTAATTAGGGAAGAAATCTTG
AGCGGAatgaaaatttggcggatttagccaaaatctaccaaattaagttc
ccgccaaatatAAATTTTTCCACCATCCACCAAATTTAAATTGTTGTATT
CATTCTCCC Coding sequence (CDS) from alignment at scaffold_397:135461..137269+ >TCONS_00063639 ID=TCONS_00063639|Name=TCONS_00063639|organism=Clytia hemisphaerica|type=CDS|length=672bp|location=Sequence derived from alignment at scaffold_397:135461..137269+ (Clytia hemisphaerica)
ATGCTCTCATCCGAAAAGTTTCTACTCCTAGCTACAACCCTGTTGGCTCT
CAGTGACGTAATCTGGACAAGACCTACACTCGAGttcattttgattggtc
gaaataTGCGTTCGAATTATATTGAATACCAAAGAAAAACAGTCAAACAC
ATAGAGGAATGTTTTATGAGTTGCCAACACGATGATTATTGTAACTCGGT
GATCATCAAACCCAAAACGGTTTCACTGGATTATTTCGGATTCAAAGAAT
GTCAGTTTTATGATCGTTATTTCAAAGAAGAAGATTTGATCGAGGACGGG
AGTATTGTAAATGAAATTTATGTTGTTAATTATTAGATGCTCTCATCCGA
AAAGTTTCTACTCCTAGCTACAACCCTGTTGGCTCTCAGTGACGTAATCT
GGACAAGACCTACACTCGAGttcattttgattggtcgaaataTGCGTTCG
AATTATATTGAATACCAAAGAAAAACAGTCAAACACATAGAGGAATGTTT
TATGAGTTGCCAACACGATGATTATTGTAACTCGGTGATCATCAAACCCA
AAACGGTTTCACTGGATTATTTCGGATTCAAAGAATGTCAGTTTTATGAT
CGTTATTTCAAAGAAGAAGATTTGATCGAGGACGGGAGTATTGTAAATGA
AATTTATGTTGTTAATTATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063639-exon-scaffold_397-1491911889:135461..135642 | TCONS_00063639-exon-scaffold_397-1491911889:135461..135642 | Clytia hemisphaerica | exon |
| TCONS_00063639-exon-scaffold_397-1510915933:135461..135642 | TCONS_00063639-exon-scaffold_397-1510915933:135461..135642 | Clytia hemisphaerica | exon |
| TCONS_00063639-exon-scaffold_397-1575043694:135461..135642 | TCONS_00063639-exon-scaffold_397-1575043694:135461..135642 | Clytia hemisphaerica | exon |
| TCONS_00063639-exon-scaffold_397-1491911889:136303..137269 | TCONS_00063639-exon-scaffold_397-1491911889:136303..137269 | Clytia hemisphaerica | exon |
| TCONS_00063639-exon-scaffold_397-1510915933:136303..137269 | TCONS_00063639-exon-scaffold_397-1510915933:136303..137269 | Clytia hemisphaerica | exon |
| TCONS_00063639-exon-scaffold_397-1575043694:136303..137269 | TCONS_00063639-exon-scaffold_397-1575043694:136303..137269 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_397 | supercontig | scaffold_397:135461..137269 + |
Blast
The following BLAST results are available for this feature:
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