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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063635 ID=TCONS_00063635|Name=TCONS_00063635|organism=Clytia hemisphaerica|type=transcript|length=3988bp
AGATAGTTGTggaaatattatattgtttggtGAATATTGATCCTGAACTG
AAAATAAATCCTAAAATTATGACTATCGTTTACTTATTGTGTGTGTTTGT
GTGTACTTGTCGTGAGTTGAACAGGAAAAAGGGGGAAAAGGAGGAAAATG
GTACTTTCAAGAGAATTATGGGAAAAAGATTTGTAAGAATTTTCCCCAAC
ACAGATGGATTGTGGGAGTTCTGATTAATCATTCGTCCAGGCTTAGTAAG
ACCTGTGAATCTTTCAGATAACCATAGCTGCTGGGATATAGTTTAATAAT
GAAGGTCTTTGAGTATGATTGGATTTGATTAAGTTCTTTTTATACAAGGG
GTATTAAATTAAGTACATGGACTAAAATAGAGCTTAGAAATAAGGGGAAA
ATAGAGCCTTTTTTCTACTCTAGTATTCCATTATGTCTGAACTAAAAAGA
AGGGAATAAATTTAGCATAAACGACTAAATATATGTATGTTTGAAAGAGA
GACCGAGCCAAAATCTTAATAAAATCCTGTTGATAAACGATTTTAAAAGG
GGATCAGGGCTAGTAAAAAGAAGGGGatagaaaaagtaaaatacaATCCT
TTATAGTGTGTTTAAGTAAACACATTTTTCAGTGATGATAAGATAGGGAT
TCTCTCTTGAGTAAGAGTATAAGGAGCCTTTATATATACTTGTTTCACga
tatttaaaatttcttccACATTCACATACATACATGACAGGGGAAAATAT
GAGTCTTGTTTTTTGTTATAGATAGTTTAGTATATAATTTGTTTGTCAAA
TTACTGTGTGTGAGCTTGACACGTCTTTGTTGGTAATATTGACACATTTc
gtcaatcaataaataaatagaaTTTCCATAAAAGtataaactttgttttt
tcatttatttacctTCATTCTTTTTATCTCGTTTAGGGGTCAAAGAGAGA
CATTTGGATGAACAAAGTATAATTACATACAACAACACGTAAAAAGACAA
CAAGAAGCCCTTCAGTGAGTGATTTATTACAAAACGGAAACAACCCACTC
GTCCGAAAAAAACAGAATACGGAATCCCCTATAGGAGCGGAACAAAGACG
GATTTTCGATTTCATGGTGTGCATTAGATCCGGAACTAACTGATCATCGA
ATCCATTAGATAGTCAACAAAATAACCAGACGAATGCTATGCTATAATTG
AGATATCTACTTCATACTTACATTACACTGAGGGAGACGCACTTGACCTG
CGATCTctctaaaatcaaaatgaataCAAATTCAGTATCACAAGTGACTA
TTTTACTTTTGCTTTGTTGTGGAACATTGGTAGATTCGCTTGGTCGTGGA
CGAACGCGTCCAAAAGCTAAGAAATGTGAGAAAATTACAATACCCTTGTG
CAAAGACGTTGGATATAACGAAACATACATGCCCAATAATTTCGGACAGA
GTTCTCAATTCGAGGCTGGGCTAATCATTCATCAGTTTTGGCCGTTGGTT
TTAATCAACTGTTCACCGTTACTGAAACATTTCGTGTGCTCGTTATATGC
ACCTATGTGTGATCCAATATACTTCAAAGAGATTGTACCGTGTCGTTCAT
TTTGTGAAGACGTTCGCGATTCGTGTACGGCCATTATGAAAAACAATGGT
TTTGATTGGCCTTCTCATCTAAAATGCGAACAATTTCCAACACGTAAAGA
GAACAGTATTTGCATGAAGCCTAGTAATGCACACGTcagcaaaaataata
aaacgaCCAACAAACCAACCAGCTCACCAAACTCAAAAACAGTTAAACCT
AATACTAATAATCATGGAACGAGTGGTGGCGGAACGAAACAATCGGACGG
ACCATACCGCCCACCTACCCATATTAATACGAACGGAGGTGCTAGAGGAT
GTGGGTGCATGTGTAAAGCACCCTTTGTTTATCCAAACGCCTCCAGTAGA
GGAGAACTTCCACCTTGCGTGTTACCATGTAAACAATTCTACTTCAAAGA
AGACGAGGCGAATttcgtcacattttggttaGGCTTATGGTCTATCATCG
CCTTTATTGGAACTCTTATAACAATCGCAACCTTCTTCATTGATCGCTCT
CGATTCACACAAGCGGAACGACCCATTGTTTTCATGTCATTCTGTTACTT
TCTAGTCGCTTTCGGCTACATTGTGCGGTTAATATACGGACATGACGCTA
TCGCTTGTGATAGTAAGACCGGGCTGGCTCGATACGCAGCCACTGGTCCA
GCACACTGCACAACTGTATTTTTCATGACTTACTTTTTCGCTAATGTAGC
GTGGATCTGGTGGGTTGTACTATCTATGAATTGGTTTTTATCGAGCGGAC
TCAGATGGCCCAGTAAAGCTATATCGAGTTATTCCCAGTATTTCCATTTT
ATCGCATGGATTGTACCAACTGTCCAGACAATGGCTATTTTGGCCATGTC
CGCAATCGATGGTGACCCGGTCAGTGGTTTATGTTCAGTTGGTAACCATA
ACAACAATAACTTAACAATTTTTATGATCGCACCACTATTGATCTACACT
ATGTTGTCGCTTTCGTTTTTCGTAGCAGGAGTGATAGCAATTGTTCAACG
TAAAAGACATAATAAGTCCAATAACGGTCAAATAACACCTGAATATTTCG
ACGAAGAAAGACAAGCATGTAGTTATGTCTCAAAAATTGGGGTATACACT
TTTATGGTATTCTTCCCTGCGTTCACCCTTATTGGCTGTTATTTTTATGA
ACACAACAATAAGGAAATATGGGAAAAATCAACGAACTGCCCGTGTGTCC
GGGATAAAGTACGCCCGAACTATTATGTgtatttattgaaatatttcatg
tCTCTTGTTATTGGATTGATTTCTGGTTTTTGGGTTTTGGACTCAAGGAC
AGTCGATTCATGGAAAAGATTTCTGTTGAAATTTGTTAAAGACGATTGTA
ATGAGAATAATAATTTACTGGCAGCTCAGAAATATAACGGAGCTCCAGTA
CAGTTATAAATTCcgacatttcaaaattttattaaaatatttttgtgttt
ttgtgttGATATTTATATAGatgataaaaaactaaaaattttcgttattg
ttattattataattattattCTGTACGAAGTAgtcatttgaaaatattga
atttttttgagtttaaaacaAATAGTTGTTAAATTTATACTGAAAGAagc
ttaaaattttgttttgaaatcaaactAAACAAATTACCATTCTACTTGAA
GAAAGCTTGTGTAAAAAATAGCAGTAACAATAGTTGACTGTAGAGAAATA
GTGAAACGTNTCGAAGAAAGCTTGCGTAAAAAAATTGCAGAACTATAGTT
GACTGTAAAGAAATATTGAAACGGTATCTTCGCTTTAGTAACCATAGTTC
CTTGAATTATCCTCTCCATAATTGAGTCTTGTCTTGTTTTCGTAGGACTG
AAAAGAGGCGGTCTTACAAGACCATAATATAATTTTCATGTTTCATTATT
AATAATATTTATATGTTGAGATTATAAGAAACTTGCTCTGTGAAACATTT
TTGCCACCTTTCAAAATCATAGTGGAATAGTACCATCCTTATTATAGCAA
GttctttaatttcaaattggTAGTAATTCTGATGCTAAGTTGTTTAGAAG
AATGCGATAATGAGATGAATGAGTCGGTCCAATTATGACTAAATTTGTGT
TACGTCATTTGAGTATCAACCTGATATTAATTATAGGAACTTTATTAACG
ACTCCTTTACCTTCTCGTGTGCTTATATGAGAAAAATTTTTGTGTCTTAA
CATTCGAAATGTATATTGAAAAGTTAAGATTACATTTTACATGACAATTT
TATATTCGTAACTTATggaaaaagatagtatttatgtGTTATATATGGcc
ccaaacaattttttgtacaacttttttctccatttaaaattatattaaat
ttaTTAAGAAAGACTActgcaaaataaaaataatgttg Run BLAST on NCBI transcript from alignment at scaffold_397:52586..56573+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063635 ID=TCONS_00063635|Name=TCONS_00063635|organism=Clytia hemisphaerica|type=transcript|length=3988bp|location=Sequence derived from alignment at scaffold_397:52586..56573+ (Clytia hemisphaerica)
AGATAGTTGTggaaatattatattgtttggtGAATATTGATCCTGAACTG
AAAATAAATCCTAAAATTATGACTATCGTTTACTTATTGTGTGTGTTTGT
GTGTACTTGTCGTGAGTTGAACAGGAAAAAGGGGGAAAAGGAGGAAAATG
GTACTTTCAAGAGAATTATGGGAAAAAGATTTGTAAGAATTTTCCCCAAC
ACAGATGGATTGTGGGAGTTCTGATTAATCATTCGTCCAGGCTTAGTAAG
ACCTGTGAATCTTTCAGATAACCATAGCTGCTGGGATATAGTTTAATAAT
GAAGGTCTTTGAGTATGATTGGATTTGATTAAGTTCTTTTTATACAAGGG
GTATTAAATTAAGTACATGGACTAAAATAGAGCTTAGAAATAAGGGGAAA
ATAGAGCCTTTTTTCTACTCTAGTATTCCATTATGTCTGAACTAAAAAGA
AGGGAATAAATTTAGCATAAACGACTAAATATATGTATGTTTGAAAGAGA
GACCGAGCCAAAATCTTAATAAAATCCTGTTGATAAACGATTTTAAAAGG
GGATCAGGGCTAGTAAAAAGAAGGGGatagaaaaagtaaaatacaATCCT
TTATAGTGTGTTTAAGTAAACACATTTTTCAGTGATGATAAGATAGGGAT
TCTCTCTTGAGTAAGAGTATAAGGAGCCTTTATATATACTTGTTTCACga
tatttaaaatttcttccACATTCACATACATACATGACAGGGGAAAATAT
GAGTCTTGTTTTTTGTTATAGATAGTTTAGTATATAATTTGTTTGTCAAA
TTACTGTGTGTGAGCTTGACACGTCTTTGTTGGTAATATTGACACATTTc
gtcaatcaataaataaatagaaTTTCCATAAAAGtataaactttgttttt
tcatttatttacctTCATTCTTTTTATCTCGTTTAGGGGTCAAAGAGAGA
CATTTGGATGAACAAAGTATAATTACATACAACAACACGTAAAAAGACAA
CAAGAAGCCCTTCAGTGAGTGATTTATTACAAAACGGAAACAACCCACTC
GTCCGAAAAAAACAGAATACGGAATCCCCTATAGGAGCGGAACAAAGACG
GATTTTCGATTTCATGGTGTGCATTAGATCCGGAACTAACTGATCATCGA
ATCCATTAGATAGTCAACAAAATAACCAGACGAATGCTATGCTATAATTG
AGATATCTACTTCATACTTACATTACACTGAGGGAGACGCACTTGACCTG
CGATCTctctaaaatcaaaatgaataCAAATTCAGTATCACAAGTGACTA
TTTTACTTTTGCTTTGTTGTGGAACATTGGTAGATTCGCTTGGTCGTGGA
CGAACGCGTCCAAAAGCTAAGAAATGTGAGAAAATTACAATACCCTTGTG
CAAAGACGTTGGATATAACGAAACATACATGCCCAATAATTTCGGACAGA
GTTCTCAATTCGAGGCTGGGCTAATCATTCATCAGTTTTGGCCGTTGGTT
TTAATCAACTGTTCACCGTTACTGAAACATTTCGTGTGCTCGTTATATGC
ACCTATGTGTGATCCAATATACTTCAAAGAGATTGTACCGTGTCGTTCAT
TTTGTGAAGACGTTCGCGATTCGTGTACGGCCATTATGAAAAACAATGGT
TTTGATTGGCCTTCTCATCTAAAATGCGAACAATTTCCAACACGTAAAGA
GAACAGTATTTGCATGAAGCCTAGTAATGCACACGTcagcaaaaataata
aaacgaCCAACAAACCAACCAGCTCACCAAACTCAAAAACAGTTAAACCT
AATACTAATAATCATGGAACGAGTGGTGGCGGAACGAAACAATCGGACGG
ACCATACCGCCCACCTACCCATATTAATACGAACGGAGGTGCTAGAGGAT
GTGGGTGCATGTGTAAAGCACCCTTTGTTTATCCAAACGCCTCCAGTAGA
GGAGAACTTCCACCTTGCGTGTTACCATGTAAACAATTCTACTTCAAAGA
AGACGAGGCGAATttcgtcacattttggttaGGCTTATGGTCTATCATCG
CCTTTATTGGAACTCTTATAACAATCGCAACCTTCTTCATTGATCGCTCT
CGATTCACACAAGCGGAACGACCCATTGTTTTCATGTCATTCTGTTACTT
TCTAGTCGCTTTCGGCTACATTGTGCGGTTAATATACGGACATGACGCTA
TCGCTTGTGATAGTAAGACCGGGCTGGCTCGATACGCAGCCACTGGTCCA
GCACACTGCACAACTGTATTTTTCATGACTTACTTTTTCGCTAATGTAGC
GTGGATCTGGTGGGTTGTACTATCTATGAATTGGTTTTTATCGAGCGGAC
TCAGATGGCCCAGTAAAGCTATATCGAGTTATTCCCAGTATTTCCATTTT
ATCGCATGGATTGTACCAACTGTCCAGACAATGGCTATTTTGGCCATGTC
CGCAATCGATGGTGACCCGGTCAGTGGTTTATGTTCAGTTGGTAACCATA
ACAACAATAACTTAACAATTTTTATGATCGCACCACTATTGATCTACACT
ATGTTGTCGCTTTCGTTTTTCGTAGCAGGAGTGATAGCAATTGTTCAACG
TAAAAGACATAATAAGTCCAATAACGGTCAAATAACACCTGAATATTTCG
ACGAAGAAAGACAAGCATGTAGTTATGTCTCAAAAATTGGGGTATACACT
TTTATGGTATTCTTCCCTGCGTTCACCCTTATTGGCTGTTATTTTTATGA
ACACAACAATAAGGAAATATGGGAAAAATCAACGAACTGCCCGTGTGTCC
GGGATAAAGTACGCCCGAACTATTATGTgtatttattgaaatatttcatg
tCTCTTGTTATTGGATTGATTTCTGGTTTTTGGGTTTTGGACTCAAGGAC
AGTCGATTCATGGAAAAGATTTCTGTTGAAATTTGTTAAAGACGATTGTA
ATGAGAATAATAATTTACTGGCAGCTCAGAAATATAACGGAGCTCCAGTA
CAGTTATAAATTCcgacatttcaaaattttattaaaatatttttgtgttt
ttgtgttGATATTTATATAGatgataaaaaactaaaaattttcgttattg
ttattattataattattattCTGTACGAAGTAgtcatttgaaaatattga
atttttttgagtttaaaacaAATAGTTGTTAAATTTATACTGAAAGAagc
ttaaaattttgttttgaaatcaaactAAACAAATTACCATTCTACTTGAA
GAAAGCTTGTGTAAAAAATAGCAGTAACAATAGTTGACTGTAGAGAAATA
GTGAAACGTNTCGAAGAAAGCTTGCGTAAAAAAATTGCAGAACTATAGTT
GACTGTAAAGAAATATTGAAACGGTATCTTCGCTTTAGTAACCATAGTTC
CTTGAATTATCCTCTCCATAATTGAGTCTTGTCTTGTTTTCGTAGGACTG
AAAAGAGGCGGTCTTACAAGACCATAATATAATTTTCATGTTTCATTATT
AATAATATTTATATGTTGAGATTATAAGAAACTTGCTCTGTGAAACATTT
TTGCCACCTTTCAAAATCATAGTGGAATAGTACCATCCTTATTATAGCAA
GttctttaatttcaaattggTAGTAATTCTGATGCTAAGTTGTTTAGAAG
AATGCGATAATGAGATGAATGAGTCGGTCCAATTATGACTAAATTTGTGT
TACGTCATTTGAGTATCAACCTGATATTAATTATAGGAACTTTATTAACG
ACTCCTTTACCTTCTCGTGTGCTTATATGAGAAAAATTTTTGTGTCTTAA
CATTCGAAATGTATATTGAAAAGTTAAGATTACATTTTACATGACAATTT
TATATTCGTAACTTATggaaaaagatagtatttatgtGTTATATATGGcc
ccaaacaattttttgtacaacttttttctccatttaaaattatattaaat
ttaTTAAGAAAGACTActgcaaaataaaaataatgttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063635-exon-scaffold_397-1491911889:52586..56573 | TCONS_00063635-exon-scaffold_397-1491911889:52586..56573 | Clytia hemisphaerica | exon |
| TCONS_00063635-exon-scaffold_397-1510915933:52586..56573 | TCONS_00063635-exon-scaffold_397-1510915933:52586..56573 | Clytia hemisphaerica | exon |
| TCONS_00063635-exon-scaffold_397-1575043694:52586..56573 | TCONS_00063635-exon-scaffold_397-1575043694:52586..56573 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_397 | supercontig | scaffold_397:52586..56573 + |
Blast
BLAST of TCONS_00063635 vs. Swiss-Prot (Human)
Match: FZD5 (Frizzled-5 OS=Homo sapiens GN=FZD5 PE=1 SV=2) HSP 1 Score: 449.899 bits (1156), Expect = 2.346e-142 Identity = 217/546 (39.74%), Postives = 320/546 (58.61%), Query Frame = 1
Query: 1339 LGRGRTRPKAKKCEKITIPLCKDVGYNETYMPNNFGQSSQFEAGLIIHQFWPLVLINCSPLLKHFVCSLYAPMCDPIYFKEIVPCRSFCEDVRDSCTAIMKNNGFDWPSHLKCEQFPT--RKENSICMKPSNAHVSKNNKTTNKPTSSPNSKTVKPXXXXXXXXXXXXKQSDGPYRPPTHINTNGGARGCG---CMCKAPFV------YP--NASSRGELPPCVLPCKQFYFKEDEANFVTFWLGLWSIIAFIGTLITIATFFIDRSRFTQAERPIVFMSFCYFLVAFGYIVRLIYGHDAIACDSKTGLARYAATGPAHCTTVFFMTYFFANVAWIWWVVLSMNWFLSSGLRWPSKAISSYSQYFHFIAWIVPTVQTMAILAMSAIDGDPVSGLCSVGNHNNNNLTIFMIAPLLIYTMLSLSFFVAGVIAIVQRKRHNKSNNGQITPEYFDEERQACSYVSKIGVYTFMVFFPAFTLIGCYFYEHNNKEIWEKSTNCPCV-----RDKVRPNYYVYLLKYFMSLVIGLISGFWVLDSRTVDSWKRF 2922
+GR KA C++IT+P+C+ +GYN T+MPN F +Q EAGL +HQFWPLV I CSP L+ F+CS+Y P+C P Y K + PCRS CE + C+ +M+ GF WP + C++ P R +CM +++ TT P P T+ PP + G G C C+ PFV +P N G++P C +PC Q F DE F TFW+GLWS++ FI T T+ATF ID RF ERPI+F+S CY V+ G++VRL+ GH ++AC + Y TGPA CT VF + YFF + IWWV+LS+ WFL++G++W ++AI+ Y+QYFH AW++P+V+++ LA+S++DGDPV+G+C VGN N N+L F++ PL++Y ++ F +AG +++ R R G T D+ + + +IG++T + PA ++ CY YE + +E WE + C C + + +P Y+V +LKYFM LV+G+ SG W+ +TV+SW+RF
Sbjct: 21 VGRAAAASKAPVCQEITVPMCRGIGYNLTHMPNQFNHDTQDEAGLEVHQFWPLVEIQCSPDLRFFLCSMYTPICLPDYHKPLPPCRSVCERAKAGCSPLMRQYGFAWPERMSCDRLPVLGRDAEVLCMD-----YNRSEATTAPPRPFPAKPTLP--------------------GPPGAPASGGECPAGGPFVCKCREPFVPILKESHPLYNKVRTGQVPNCAVPCYQPSFSADERTFATFWIGLWSVLCFISTSTTVATFLIDMERFRYPERPIIFLSACYLCVSLGFLVRLVVGHASVACSREHNHIHYETTGPALCTIVFLLVYFFGMASSIWWVILSLTWFLAAGMKWGNEAIAGYAQYFHLAAWLIPSVKSITALALSSVDGDPVAGICYVGNQNLNSLRGFVLGPLVLYLLVGTLFLLAGFVSLF-RIRSVIKQGGTKT----DKLEK---LMIRIGIFTLLYTVPASIVVACYLYEQHYRESWEAALTCACPGHDTGQPRAKPEYWVLMLKYFMCLVVGITSGVWIWSGKTVESWRRF 533
The following BLAST results are available for this feature:
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