TCONS_00063622 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063622
Unique NameTCONS_00063622
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length251

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063622 ID=TCONS_00063622|Name=TCONS_00063622|organism=Clytia hemisphaerica|type=transcript|length=251bp
TAgattttgaaatagaaaattgcAAGCATTCAATCAACTGCACCATCGGA
GTTAAACAAGGGGACATTCTTGGGCCTGTACTCTTCGTTGTTTACATAGC
GGCTATAATGATCACCTGGCGTAAACTGCACGATCGACCTCTTTGTATGT
TCAGAACCAAGAAGGATTTCTGTACGACAGGGAGACGAGTTACTGCCTCC
GGAATCGATTTCGACTTCCCTGACTCAAAGTACGCAGATGATACAGCCGT
G
Run BLAST on NCBI

transcript from alignment at scaffold_396:57340..57590

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063622 ID=TCONS_00063622|Name=TCONS_00063622|organism=Clytia hemisphaerica|type=transcript|length=251bp|location=Sequence derived from alignment at scaffold_396:57340..57590 (Clytia hemisphaerica)
CACGGCTGTATCATCTGCGTACTTTGAGTCAGGGAAGTCGAAATCGATTC
CGGAGGCAGTAACTCGTCTCCCTGTCGTACAGAAATCCTTCTTGGTTCTG
AACATACAAAGAGGTCGATCGTGCAGTTTACGCCAGGTGATCATTATAGC
CGCTATGTAAACAACGAAGAGTACAGGCCCAAGAATGTCCCCTTGTTTAA
CTCCGATGGTGCAGTTGATTGAATGCTTgcaattttctatttcaaaatcT
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039878XLOC_039878Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063622-exon-scaffold_396-1491911889:57340..57590TCONS_00063622-exon-scaffold_396-1491911889:57340..57590Clytia hemisphaericaexon
TCONS_00063622-exon-scaffold_396-1510915933:57340..57590TCONS_00063622-exon-scaffold_396-1510915933:57340..57590Clytia hemisphaericaexon
TCONS_00063622-exon-scaffold_396-1575043694:57340..57590TCONS_00063622-exon-scaffold_396-1575043694:57340..57590Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_396supercontigscaffold_396:57340..57590 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.26383	1.47173	0.854409	1.67181	0	0	0	0	0.635896	0.78766	0	1.00513	0.501868	0	0.428493	0	0	0.580628	1.60434	1.67882	0	0	0	1.57323	0.810192	0	1.03472	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063622 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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