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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063620 ID=TCONS_00063620|Name=TCONS_00063620|organism=Clytia hemisphaerica|type=transcript|length=809bp
ttttgaaatttcatcaaGCTTTTCTAATTCTATGCAACATCCTAACTTTT
TTGCTAAAGGAAAACAAAGTACTTACTCAAATtctacttttcaaagaatt
ctattGACTGTAAAGCACGATACTCAAAACTTTGAACTATtgaattattt
cttttaaaagataatttagattttctaaaatatcttgatttttttcatag
aattttcaaaaagatttttacatAACCTAGAACTGATAATGAACCAAGAC
ATAAATGGGGACTTCAGAGGAGCATGCACTATATGTGGGTGTAAAATGTA
TGTATACGAAAGATCTTCATCCGTCATGTGTGCCTTTTGTGGACATTACC
CAATTAAACATTTGCCACTAATGGAAAAGGAACAGTGTGAAGCTTCAAAT
TCATGTAAACATCTTGAATCCATTGAGAAGCAAGACACCGATTCTGATCT
ATACAAACATCTTGAATCCATTGAGAAGCAAGACACCGAATCTCGCCCAT
GCAAGCATTCTGAATCCGTTGAGAAGCAAGACACCGATTCTCACCCATAC
AAACAGTCTGAATTTGATGAAAACGTGGAAGAATCTCAGTCTGCTATTGA
CTTGTCCATTTCGTATGACACTTCTGCATCTAATGAACTTATTATTACTT
CTGCAAATATTGCATCTAATCTTTCTGATTTCGAAAGGCAATTCATAATT
GCGAAAGAAGAATTCGAGTCTGAGGAACACTCAAATAACATTTACATTTT
GGACAGGGAAAACAAAACCGTTAAATGTTCACTTTGTAACATTAAACTTA
ATCTCCAGA Run BLAST on NCBI protein sequence of TCONS_00063620-protein >TCONS_00063620-protein ID=TCONS_00063620-protein|Name=TCONS_00063620-protein|organism=Clytia hemisphaerica|type=polypeptide|length=190bp
MNQDINGDFRGACTICGCKMYVYERSSSVMCAFCGHYPIKHLPLMEKEQC
EASNSCKHLESIEKQDTDSDLYKHLESIEKQDTESRPCKHSESVEKQDTD
SHPYKQSEFDENVEESQSAIDLSISYDTSASNELIITSANIASNLSDFER
QFIIAKEEFESEEHSNNIYILDRENKTVKCSLCNIKLNLQ Run BLAST on NCBI transcript from alignment at scaffold_396:49827..50635 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063620 ID=TCONS_00063620|Name=TCONS_00063620|organism=Clytia hemisphaerica|type=transcript|length=809bp|location=Sequence derived from alignment at scaffold_396:49827..50635 (Clytia hemisphaerica)
TCTGGAGATTAAGTTTAATGTTACAAAGTGAACATTTAACGGTTTTGTTT
TCCCTGTCCAAAATGTAAATGTTATTTGAGTGTTCCTCAGACTCGAATTC
TTCTTTCGCAATTATGAATTGCCTTTCGAAATCAGAAAGATTAGATGCAA
TATTTGCAGAAGTAATAATAAGTTCATTAGATGCAGAAGTGTCATACGAA
ATGGACAAGTCAATAGCAGACTGAGATTCTTCCACGTTTTCATCAAATTC
AGACTGTTTGTATGGGTGAGAATCGGTGTCTTGCTTCTCAACGGATTCAG
AATGCTTGCATGGGCGAGATTCGGTGTCTTGCTTCTCAATGGATTCAAGA
TGTTTGTATAGATCAGAATCGGTGTCTTGCTTCTCAATGGATTCAAGATG
TTTACATGAATTTGAAGCTTCACACTGTTCCTTTTCCATTAGTGGCAAAT
GTTTAATTGGGTAATGTCCACAAAAGGCACACATGACGGATGAAGATCTT
TCGTATACATACATTTTACACCCACATATAGTGCATGCTCCTCTGAAGTC
CCCATTTATGTCTTGGTTCATTATCAGTTCTAGGTTatgtaaaaatcttt
ttgaaaattctatgaaaaaaatcaagatattttagaaaatctaaattatc
ttttaaaagaaataattcaATAGTTCAAAGTTTTGAGTATCGTGCTTTAC
AGTCaatagaattctttgaaaagtagaATTTGAGTAAGTACTTTGTTTTC
CTTTAGCAAAAAAGTTAGGATGTTGCATAGAATTAGAAAAGCttgatgaa
atttcaaaa Coding sequence (CDS) from alignment at scaffold_396:49827..50635 >TCONS_00063620 ID=TCONS_00063620|Name=TCONS_00063620|organism=Clytia hemisphaerica|type=CDS|length=570bp|location=Sequence derived from alignment at scaffold_396:49827..50635 (Clytia hemisphaerica)
CTGGAGATTAAGTTTAATGTTACAAAGTGAACATTTAACGGTTTTGTTTT
CCCTGTCCAAAATGTAAATGTTATTTGAGTGTTCCTCAGACTCGAATTCT
TCTTTCGCAATTATGAATTGCCTTTCGAAATCAGAAAGATTAGATGCAAT
ATTTGCAGAAGTAATAATAAGTTCATTAGATGCAGAAGTGTCATACGAAA
TGGACAAGTCAATAGCAGACTGAGATTCTTCCACGTTTTCATCAAATTCA
GACTGTTTGTATGGGTGAGAATCGGTGTCTTGCTTCTCAACGGATTCAGA
ATGCTTGCATGGGCGAGATTCGGTGTCTTGCTTCTCAATGGATTCAAGAT
GTTTGTATAGATCAGAATCGGTGTCTTGCTTCTCAATGGATTCAAGATGT
TTACATGAATTTGAAGCTTCACACTGTTCCTTTTCCATTAGTGGCAAATG
TTTAATTGGGTAATGTCCACAAAAGGCACACATGACGGATGAAGATCTTT
CGTATACATACATTTTACACCCACATATAGTGCATGCTCCTCTGAAGTCC
CCATTTATGTCTTGGTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063620-exon-scaffold_396-1491911889:49827..50635 | TCONS_00063620-exon-scaffold_396-1491911889:49827..50635 | Clytia hemisphaerica | exon |
| TCONS_00063620-exon-scaffold_396-1510915933:49827..50635 | TCONS_00063620-exon-scaffold_396-1510915933:49827..50635 | Clytia hemisphaerica | exon |
| TCONS_00063620-exon-scaffold_396-1575043694:49827..50635 | TCONS_00063620-exon-scaffold_396-1575043694:49827..50635 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_396 | supercontig | scaffold_396:49827..50635 . |
Blast
The following BLAST results are available for this feature:
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