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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063617 ID=TCONS_00063617|Name=TCONS_00063617|organism=Clytia hemisphaerica|type=transcript|length=927bp
TTCACATCTACCTTTACAGCCACAACGAATGACTTTTAAAAGATCTGGTG
AGCCAGCTTCCTCATCCGTCATGACTGGTTCATACGATTCACCGAGTAGC
TGAAATCCCAAGTCCAGTGGCATTTGGTCTGAATCTTTTAGCTCACACCA
TACCTTTATTTGATGGTATACACGTAATCCATGGTAATACGCTGCTCTAG
GTGATGGTGGTAGCATTGAAGGGTCGATAACGGATCGATTTGACGAAACC
ATTTGCTCATATTTCTTCTTTCGAATGGTTGGTAAGGTGTCGTTCACTGA
ATGCAAAAGCTCGAATAAACAGATTGTTGCATTGCCAATAATTTCTGGCG
AGTTTTCTTTGTAAAACTCGCTGATTATTGATTGGATTGCAGGCGAATCG
tttactttgttgaaaattgaagtttttCCAAAGTTGTGGATAGCAGAAGT
GGTGTCGCATCCCGTGAATGCATGTGCGAATAGGAGGAACTCTGCGTTGC
TTTCGTTGCTTTGTAGCATATTTGATACGTTGTAGCACTCTCTGGATCGG
TTTTTCTTCTTAGTCACATCTACCATAAAGATTTCTTTCAATGATGGATC
CTTGGCGATGTGATGAAGCAAGAGACAAAGGATGTCAGTATCATCAGAAT
ATACAGCAATAGACGAAGATTTGGCAGCAGTTAAAGCCTCTTTCACAATC
GTTGTATCAGCATCACTTGGGCACTCGACCACTGTGAAGTTGCGCTTTCC
ACTTAGAAAACTTGCAAGACATGTAACAAATCGTTTTTTGTTACGGTAGT
TACCAAGAAACGTGTTTCGATTGGCTGGACAAGGATTTACGATTTTGATT
TCAACCTCTTGGGAAACAGCACCTGCTCGTTTTTAGTGTGTTGAATCCTT
CGTTGATAGCTCATATCCATCGAAAAC Run BLAST on NCBI protein sequence of TCONS_00063617-protein >TCONS_00063617-protein ID=TCONS_00063617-protein|Name=TCONS_00063617-protein|organism=Clytia hemisphaerica|type=polypeptide|length=192bp
MVDVTKKKNRSRECYNVSNMLQSNESNAEFLLFAHAFTGCDTTSAIHNFG
KTSIFNKVNDSPAIQSIISEFYKENSPEIIGNATICLFELLHSVNDTLPT
IRKKKYEQMVSSNRSVIDPSMLPPSPRAAYYHGLRVYHQIKVWCELKDSD
QMPLDLGFQLLGESYEPVMTDEEAGSPDLLKVIRCGCKGRCE Run BLAST on NCBI transcript from alignment at scaffold_396:4696..5622 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063617 ID=TCONS_00063617|Name=TCONS_00063617|organism=Clytia hemisphaerica|type=transcript|length=927bp|location=Sequence derived from alignment at scaffold_396:4696..5622 (Clytia hemisphaerica)
GTTTTCGATGGATATGAGCTATCAACGAAGGATTCAACACACTAAAAACG
AGCAGGTGCTGTTTCCCAAGAGGTTGAAATCAAAATCGTAAATCCTTGTC
CAGCCAATCGAAACACGTTTCTTGGTAACTACCGTAACAAAAAACGATTT
GTTACATGTCTTGCAAGTTTTCTAAGTGGAAAGCGCAACTTCACAGTGGT
CGAGTGCCCAAGTGATGCTGATACAACGATTGTGAAAGAGGCTTTAACTG
CTGCCAAATCTTCGTCTATTGCTGTATATTCTGATGATACTGACATCCTT
TGTCTCTTGCTTCATCACATCGCCAAGGATCCATCATTGAAAGAAATCTT
TATGGTAGATGTGACTAAGAAGAAAAACCGATCCAGAGAGTGCTACAACG
TATCAAATATGCTACAAAGCAACGAAAGCAACGCAGAGTTCCTCCTATTC
GCACATGCATTCACGGGATGCGACACCACTTCTGCTATCCACAACTTTGG
aaaaacttcaattttcaacaaagtaaaCGATTCGCCTGCAATCCAATCAA
TAATCAGCGAGTTTTACAAAGAAAACTCGCCAGAAATTATTGGCAATGCA
ACAATCTGTTTATTCGAGCTTTTGCATTCAGTGAACGACACCTTACCAAC
CATTCGAAAGAAGAAATATGAGCAAATGGTTTCGTCAAATCGATCCGTTA
TCGACCCTTCAATGCTACCACCATCACCTAGAGCAGCGTATTACCATGGA
TTACGTGTATACCATCAAATAAAGGTATGGTGTGAGCTAAAAGATTCAGA
CCAAATGCCACTGGACTTGGGATTTCAGCTACTCGGTGAATCGTATGAAC
CAGTCATGACGGATGAGGAAGCTGGCTCACCAGATCTTTTAAAAGTCATT
CGTTGTGGCTGTAAAGGTAGATGTGAA Coding sequence (CDS) from alignment at scaffold_396:4696..5622 >TCONS_00063617 ID=TCONS_00063617|Name=TCONS_00063617|organism=Clytia hemisphaerica|type=CDS|length=576bp|location=Sequence derived from alignment at scaffold_396:4696..5622 (Clytia hemisphaerica)
ATGGTAGATGTGACTAAGAAGAAAAACCGATCCAGAGAGTGCTACAACGT
ATCAAATATGCTACAAAGCAACGAAAGCAACGCAGAGTTCCTCCTATTCG
CACATGCATTCACGGGATGCGACACCACTTCTGCTATCCACAACTTTGGa
aaaacttcaattttcaacaaagtaaaCGATTCGCCTGCAATCCAATCAAT
AATCAGCGAGTTTTACAAAGAAAACTCGCCAGAAATTATTGGCAATGCAA
CAATCTGTTTATTCGAGCTTTTGCATTCAGTGAACGACACCTTACCAACC
ATTCGAAAGAAGAAATATGAGCAAATGGTTTCGTCAAATCGATCCGTTAT
CGACCCTTCAATGCTACCACCATCACCTAGAGCAGCGTATTACCATGGAT
TACGTGTATACCATCAAATAAAGGTATGGTGTGAGCTAAAAGATTCAGAC
CAAATGCCACTGGACTTGGGATTTCAGCTACTCGGTGAATCGTATGAACC
AGTCATGACGGATGAGGAAGCTGGCTCACCAGATCTTTTAAAAGTCATTC
GTTGTGGCTGTAAAGGTAGATGTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063617-exon-scaffold_396-1491911889:4696..5622 | TCONS_00063617-exon-scaffold_396-1491911889:4696..5622 | Clytia hemisphaerica | exon |
| TCONS_00063617-exon-scaffold_396-1510915933:4696..5622 | TCONS_00063617-exon-scaffold_396-1510915933:4696..5622 | Clytia hemisphaerica | exon |
| TCONS_00063617-exon-scaffold_396-1575043694:4696..5622 | TCONS_00063617-exon-scaffold_396-1575043694:4696..5622 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_396 | supercontig | scaffold_396:4696..5622 . |
Blast
The following BLAST results are available for this feature:
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