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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063614 ID=TCONS_00063614|Name=TCONS_00063614|organism=Clytia hemisphaerica|type=transcript|length=1618bp
CTTCTAGAACATTGTCTCAGGAGCAAATTCTTCAATACCGCCAACATctg
gaatttctcaaaagtcAGGAAGCTGAGGTTCTTGAATCCATTAGGGTAGA
CCAAGAGAAGTTATTAAATGAAGAGGAGTCGCTCAGACAAGAAATACGAc
ggcaaacagaaaagttggATCGCTTGAAAGCCTCAAGAAGCCATGCCGCT
CGTTCCGCCTTTCCGCCCGAACCTCAAAGCAACCACTCAGGGGGAAACCG
TTCCGCCATTTTTAATCGTTCCCGACCCGACCTCTCCTTTCCtcgcaaca
acaacaacaatcatCTCGTTCTTCGTTCAATTTTGCTGGTTCTGCTGCTG
CTCCATTGTTGAATTTTGGTTTGTCAAACTCACATTCCCAAGAATCATCT
TTAATTAATCGTCATATCTCGCAAAGTGAACTGTTTTTTCGTCCGACCCG
TGCAAATGATGTTACTAGAGAGTTTGCGTCCTCGCTACTGGCAGAAGTGC
AGTTATATCGTGAAGCCACCTATGCTGTCAATACCCGCAAGGCCTACCGT
ACTCACCGTAAGGTCTATCTCCAGTTTTGCAATATGCTTGATATTCCGCC
TGCTCCTGTTCAATGTTCTCACCTCTGTATGTATGCTGCCTATTTGGCGC
GGTTCCTGTTGCCGCAGTCTGTTTGTATTTATTTGAATTTTGTTGGTCTT
CTTCACCGGGAAATGGGTTTCCCCAACCCTCTCCTTGACAACTGGTTCCT
GTCCTCTGTGCTCAAGGGTATTAAGCGTTCTAAGGGTGTCCCACCTGTCC
CCAAGCTTCCCATCACCGTGGATATCCTCTCCTTCATTCATTCCCAACTC
AACCTCCTGGATAGCAAGCAGGCTTCTTTTTGGGCATTGTGTCTTGTTTC
CTTTTTTGGTCTTTTCCGGAAGAGCCACCTTTTGCCCGTTTCCCAGAGGG
ACTTTTCACCGAGCACCTTTCTCACTAGGTCTGATTTTTCATTTGTTGGT
TCTGGGGTTCATATCAGAGTGAGGTGGAGTAAAACCATCCAGTTTGGTCA
GCGTACTGTTACCATACCACTGGTGGCCATACCCTCTTCTCATCTCTGTC
CAGTTTTGGCTGTGTCTCGTGCTTTTTCCCTCACCCCAGGGGCCCTACCT
TGTGATCAAGCCTTTTGTTGGAGGGATTCCCACCTTGCATCCAATCGGGT
TTTTGTGTACCGGGATTTCATGTGCATTCTCCAGGCTCACCTCTCTCGGT
CTGGGCTCTCTCCTCGTCAATATGGGTCACACTCATTCAGACGTGGTGGG
GCCACTTTTGCGTTGGAGGCCGGGGTTCCACTTGACTCCATTGCAGTCAT
GGGTGATTGGAAGTCTGATGCAATGTACCTTTATTTACATATGCCCTTGT
CCCAGCGCCTGCACGCCCAGCATTCAATTTCTTCATATATTTCGTCTCTA
CCTAACTAACTACCACACATTGGATTTGGACATTTATTTTATATTCTAGT
TTTTATTCCTGTACATATTTGCCATGTCACTGTCTTCatttcaagaactg
aaaataccatgtagaATATACTGTGTGCCTTCCTGCCTAGTCCCCCCTTT
CGACCACTTGTGTTtaag Run BLAST on NCBI protein sequence of TCONS_00063614-protein >TCONS_00063614-protein ID=TCONS_00063614-protein|Name=TCONS_00063614-protein|organism=Clytia hemisphaerica|type=polypeptide|length=291bp
MLDIPPAPVQCSHLCMYAAYLARFLLPQSVCIYLNFVGLLHREMGFPNPL
LDNWFLSSVLKGIKRSKGVPPVPKLPITVDILSFIHSQLNLLDSKQASFW
ALCLVSFFGLFRKSHLLPVSQRDFSPSTFLTRSDFSFVGSGVHIRVRWSK
TIQFGQRTVTIPLVAIPSSHLCPVLAVSRAFSLTPGALPCDQAFCWRDSH
LASNRVFVYRDFMCILQAHLSRSGLSPRQYGSHSFRRGGATFALEAGVPL
DSIAVMGDWKSDAMYLYLHMPLSQRLHAQHSISSYISSLPN Run BLAST on NCBI transcript from alignment at scaffold_396:145368..149429- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063614 ID=TCONS_00063614|Name=TCONS_00063614|organism=Clytia hemisphaerica|type=transcript|length=4062bp|location=Sequence derived from alignment at scaffold_396:145368..149429- (Clytia hemisphaerica)
CTTCTAGAACATTGTCTCAGGAGCAAATTCTTCAATACCGCCAACATCTG
GAATTTCTCAAAAGTCAGGAAGCTGAGGTTCTTGAATCCATTAGGGTAGA
CCAAGAGAAGTTATTAAATGAAGAGGAGTCGCTCAGACAAGAAATACGAC
GGCAAACAGAAAAGTTGGATCGCTTGAAAGCCTCAAGAAGCCATGCCGCT
CGTTCCGCCTTTCCGCCCGAACCTCAAAGCAACCACTCAGGGGGAAACCG
TTCCGCCATTTTTAATCGTTCCCGACCCGACCTCTCCTTTCCTCGCAACA
ACAACAACAATCATCTCGTTCTTCGTTCAATTTTGCTGGTTCTGCTGCTG
CTCCATTGTTGAATTTTGGTTTGTCAAACTCACATTCCCAAGAATCATCT
TTAATTAATCGTCATATCTCGCAAAGTGAACTGTTTTTTCGTCCGACCCG
TGCAAATGATGTTACTAGAGGTAAAGCATTACGAATTATAGACTTTGTTT
CCCGAATTCGTCCAGCTGAAGATGAGAAAATCCTCTCTTACGATAATAAC
TGTAAACTTGCTCTGATCTTACAGGACACAAAACCTAAGCTTAATAGTGT
CACTATGGAACAGTTTAACATTGCCAATCTTAGAATTTTTTACGAATTAT
TATTTTCTGGGAAGCTCTCCACCCTTCTTCATGTGCAGGAATACCTCTCC
TATGCGATTAAGGTCTTGGAACTGGCGACTAAGTATACATGGCAATCCGT
GCTGCACTACGATGATGAGTTTCGTATCTTGAAGCATACTTATGGATTCT
CATGGAGTACTGACCACAGTCACCTATATGAGGTTGTTCTCATACCTCGC
TGGGCTGCGAAGCTACCTCGTGGGCTTGGGCAAAGCACTGATACTTCCTC
ATCCAAAAGTGATTCTTCTTTGTTTGGTCTTGCGGGTAACAATAAGGGTT
TTGGTCCTGCCATTATGACACACCTCTCTTCTGGATCAGAAATTTGTAGA
ATGTTTAATTCCAGGAAAGGATGTCAGAAGTCCCCCTGCAGGTTTGCACA
TGCCTGTAACCGTAAGGTTGGCTCACAGGCTTGTGGGAAATCTCACCAGG
GTTTCCTACATCCTGTGGGCGAGGGTGACCCTCAATGACTCCTTTCCATA
GAGCCTTCTCCATCTCCGCTTGACTCTGCTATTTGGGACAAGGAGTTACT
GAATGACCCTGACCGTCAGTTTTTATTTGATGGGGTGGTTAACGGTTTTC
AATTGCTCCCAGCAGATGCAAAAATTAGCCCTGCGGAAATGGAGAATTAT
AACTCTGCAGTTGGCCCTGGTTCTAAAGAAAAAGTTGAAGCCACTATTTT
GGAAGAACTGTCGGCCGGAAATTATATTGTTACTTCTGAAAAGCCTGTTA
TTGTCAGTGCCCTTGGAGCAGTTCCAAAGCCTGATTCAGAGGATCTCCGT
TTGATCCATGACTGTTCTATGCCCCACGGTTTGGGCGTCAATTCTTACAT
AGATATTGAGAAGCAATCTTTTCAGACTCTAAATGATGCCTGTAGGCTGA
TAGGGAAAGGTTTCTTCATCGCTAAGATAGATTTGAGACACGCGTACAGA
TCTGTCTCAGTCCACCCAGCCAACCGAGATGCTCTCGGGTTGAAGTGGAA
ATTTAGTGGGGACAAACACTACACGTATCTAAAAGACACACGTCTCCCCT
TTGGCGCACGTAGTGCACCAGGAATTTTTCACCGTTTGACTCAGAGTGTA
AGGCGTATGATGCAGAGAAGAGGCTTTCCTTTGATCATAGTATATCTTGA
CGATTTCTTGATCATTGGTAGGTCTCAGCATGAATGCCAGGCTGCTTTTG
TTGCACTCANTTGTTTGACTCAGAGTGTAAGGCATATGATGCAGAGAAGA
GGCTTTCCTTTGATCATAGTATATCTTGACGATTTCTTGATCATTGGTAG
GTCTCAGCATGAATGCCAGGCTGCTTTTGTTGCACTCAGCTCCCTGCTAG
TTTCTCTAGGATTCACAATCAGCCCTTCCAAGGTTGTTCCACCATGTCAA
AAATTAGTGTTTCTAGGGGTTGAGATTGATACCACAACATTGACTCTCTC
ACTCCCTGATAAGAAGCTAGGTGATCTGAAAGATGTCTTAATGTCTTTTC
AATCCCGAACTCGTGCCTCAAAGAGACAGCTCCAGCAGCTTGCCGGGCGT
CTCAACTGGGCCTGTAAAGTCATTTATGGTGGAAGAACCTTTCTACGTCG
CATTTTGGACCTTATGGGCTCCTTACAAAAACAGTCATCCAAGTGTCTGT
TGAGTGAGGAGTTCTTTAAAGATATTTCTTGGTGGTTGGACTTTCTTGAT
ATTTTTAATGGCCAGTGTTCATTCCATGACACTAGGCCTGTTACTAACAT
CCACACAGATGCCTGTTCTTCAGGTATTGGTGCAGTGTTTGGAAATGACT
GGTTCTACTCTAACTTGTGGGTTGATGCGCCTGCCTTGGCAGGTTTGCAC
ATCAACTACAAAGAGGCTCTTTGCATTGTGTTTGCCTTAGAACGTTGGGC
TCCTTTTCTCAGTAATAAGGTAGTCCATATCTATTGCGACAACACTGCTG
CAGTGGGCATGTTGAATAAGGGATCATCTCGCAACCCACTCATGATGACT
TACCTCAGGCGTCTGTTCTGGTGCTCTGCCACATACAACTTTCGCCTCAA
AGTTTACCATGTTCCGGGGGTCCTGAATGTTGTTGCTGATCATGTCTCTC
GATTGCATGAACACAAACATCTTGCAGCTTTTCTTGAGTATCTTTGTGAC
AATTTTGATCTGTTTGATCCTTCTGATGACATTGCCTGGCACATGTCTGA
GAACTGTTTCTTTTTCCTTCTTGGTTTATATGGGTCTGGCTCATGCCTTC
GCTCTGCCTTTTAGAGTTTGCGTCCTCGCTACTGGCAGAAGTGCAGTTAT
ATCGTGAAGCCACCTATGCTGTCAATACCCGCAAGGCCTACCGTACTCAC
CGTAAGGTCTATCTCCAGTTTTGCAATATGCTTGATATTCCGCCTGCTCC
TGTTCAATGTTCTCACCTCTGTATGTATGCTGCCTATTTGGCGCGGTTCC
TGTTGCCGCAGTCTGTTTGTATTTATTTGAATTTTGTTGGTCTTCTTCAC
CGGGAAATGGGTTTCCCCAACCCTCTCCTTGACAACTGGTTCCTGTCCTC
TGTGCTCAAGGGTATTAAGCGTTCTAAGGGTGTCCCACCTGTCCCCAAGC
TTCCCATCACCGTGGATATCCTCTCCTTCATTCATTCCCAACTCAACCTC
CTGGATAGCAAGCAGGCTTCTTTTTGGGCATTGTGTCTTGTTTCCTTTTT
TGGTCTTTTCCGGAAGAGCCACCTTTTGCCCGTTTCCCAGAGGGACTTTT
CACCGAGCACCTTTCTCACTAGGTCTGATTTTTCATTTGTTGGTTCTGGG
GTTCATATCAGAGTGAGGTGGAGTAAAACCATCCAGTTTGGTCAGCGTAC
TGTTACCATACCACTGGTGGCCATACCCTCTTCTCATCTCTGTCCAGTTT
TGGCTGTGTCTCGTGCTTTTTCCCTCACCCCAGGGGCCCTACCTTGTGAT
CAAGCCTTTTGTTGGAGGGATTCCCACCTTGCATCCAATCGGGTTTTTGT
GTACCGGGATTTCATGTGCATTCTCCAGGCTCACCTCTCTCGGTCTGGGC
TCTCTCCTCGTCAATATGGGTCACACTCATTCAGACGTGGTGGGGCCACT
TTTGCGTTGGAGGCCGGGGTTCCACTTGACTCCATTGCAGTCATGGGTGA
TTGGAAGTCTGATGCAATGTACCTTTATTTACATATGCCCTTGTCCCAGC
GCCTGCACGCCCAGCATTCAATTTCTTCATATATTTCGTCTCTACCTAAC
TAACTACCACACATTGGATTTGGACATTTATTTTATATTCTAGTTTTTAT
TCCTGTACATATTTGCCATGTCACTGTCTTCATTTCAAGAACTGAAAATA
CCATGTAGAATATACTGTGTGCCTTCCTGCCTAGTCCCCCCTTTCGACCA
CTTGTGTTTAAG Coding sequence (CDS) from alignment at scaffold_396:145368..149429- >TCONS_00063614 ID=TCONS_00063614|Name=TCONS_00063614|organism=Clytia hemisphaerica|type=CDS|length=876bp|location=Sequence derived from alignment at scaffold_396:145368..149429- (Clytia hemisphaerica)
ATGCTTGATATTCCGCCTGCTCCTGTTCAATGTTCTCACCTCTGTATGTA
TGCTGCCTATTTGGCGCGGTTCCTGTTGCCGCAGTCTGTTTGTATTTATT
TGAATTTTGTTGGTCTTCTTCACCGGGAAATGGGTTTCCCCAACCCTCTC
CTTGACAACTGGTTCCTGTCCTCTGTGCTCAAGGGTATTAAGCGTTCTAA
GGGTGTCCCACCTGTCCCCAAGCTTCCCATCACCGTGGATATCCTCTCCT
TCATTCATTCCCAACTCAACCTCCTGGATAGCAAGCAGGCTTCTTTTTGG
GCATTGTGTCTTGTTTCCTTTTTTGGTCTTTTCCGGAAGAGCCACCTTTT
GCCCGTTTCCCAGAGGGACTTTTCACCGAGCACCTTTCTCACTAGGTCTG
ATTTTTCATTTGTTGGTTCTGGGGTTCATATCAGAGTGAGGTGGAGTAAA
ACCATCCAGTTTGGTCAGCGTACTGTTACCATACCACTGGTGGCCATACC
CTCTTCTCATCTCTGTCCAGTTTTGGCTGTGTCTCGTGCTTTTTCCCTCA
CCCCAGGGGCCCTACCTTGTGATCAAGCCTTTTGTTGGAGGGATTCCCAC
CTTGCATCCAATCGGGTTTTTGTGTACCGGGATTTCATGTGCATTCTCCA
GGCTCACCTCTCTCGGTCTGGGCTCTCTCCTCGTCAATATGGGTCACACT
CATTCAGACGTGGTGGGGCCACTTTTGCGTTGGAGGCCGGGGTTCCACTT
GACTCCATTGCAGTCATGGGTGATTGGAAGTCTGATGCAATGTACCTTTA
TTTACATATGCCCTTGTCCCAGCGCCTGCACGCCCAGCATTCAATTTCTT
CATATATTTCGTCTCTACCTAACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063614-exon-scaffold_396-1575043694:148960..149429 | TCONS_00063614-exon-scaffold_396-1575043694:148960..149429 | Clytia hemisphaerica | exon |
| TCONS_00063614-exon-scaffold_396-1575043694:145368..146515 | TCONS_00063614-exon-scaffold_396-1575043694:145368..146515 | Clytia hemisphaerica | exon |
| TCONS_00063614-exon-scaffold_396-1510915933:148960..149429 | TCONS_00063614-exon-scaffold_396-1510915933:148960..149429 | Clytia hemisphaerica | exon |
| TCONS_00063614-exon-scaffold_396-1510915933:145368..146515 | TCONS_00063614-exon-scaffold_396-1510915933:145368..146515 | Clytia hemisphaerica | exon |
| TCONS_00063614-exon-scaffold_396-1491911889:148960..149429 | TCONS_00063614-exon-scaffold_396-1491911889:148960..149429 | Clytia hemisphaerica | exon |
| TCONS_00063614-exon-scaffold_396-1491911889:145368..146515 | TCONS_00063614-exon-scaffold_396-1491911889:145368..146515 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_396 | supercontig | scaffold_396:145368..149429 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006310 | DNA recombination |
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| biological_process |
GO:0006310 |
DNA recombination |
| molecular_function |
GO:0003677 |
DNA binding |
Blast
The following BLAST results are available for this feature:
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