TCONS_00063613 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063613
Unique NameTCONS_00063613
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1284

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063613 ID=TCONS_00063613|Name=TCONS_00063613|organism=Clytia hemisphaerica|type=transcript|length=1284bp
CTTCTAGAACATTGTCTCAGGAGCAAATTCTTCAATACCGCCAACATctg
gaatttctcaaaagtcAGGAAGCTGAGGTTCTTGAATCCATTAGGGTAGA
CCAAGAGAAGTTATTAAATGAAGAGGAGTCGCTCAGACAAGAAATACGAc
ggcaaacagaaaagttggATCGCTTGAAAGCCTCAAGAAGCCATGCCGCT
CGTTCCGCCTTTCCGCCCGAACCTCAAAGCAACCACTCAGGGGGAAACCG
TTCCGCCATTTTTAATCGTTCCCGACCCGACCTCTCCTTTCCtcgcaaca
acaacaacaatcatCTCGTTCTTCGTTCAATTTTGCTGGTTCTGCTGCTG
CTCCATTGTTGAATTTTGGTTTGTCAAACTCACATTCCCAAGAATCATCT
TTAATTAATCGTCATATCTCGCAAAGTGAACTGTTTTTTCGTCCGACCCG
TGCAAATGATGTTACTAGAGGTAAAGCATTACGAATTATAGACTTTGTTT
CCCGAATTCGTCCAGCTGAAGATGAGAAAATCCTCTCTTACGATAATAAC
TGTAAACTTGCTCTGATCTTACAGGACACAAAACCTAAGCTTAATAGTGT
CACTATGGAACAGTTTAACATTGCCAATCTTAGAATTTTTTACGAATTAT
TATTTTCTGGGAAGCTCTCCACCCTTCTTCATGTGCAGGAATACCTCTCC
TATGCGATTAAGGTCTTGGAACTGGCGACTAAGTATACATGGCAATCCGT
GCTGCACTACGATGATGAGTTTCGTATCTTGAAGCATACTTATGGATTCT
CATGGAGTACTGACCACAGTCACCTATATGAGGTTGTTCTCATACCTCGC
TGGGCTGCGAAGCTACCTCGTGGGCTTGGGCAAAGCACTGATACTTCCTC
ATCCAAAAGTGATTCTTCTTTGTTTGGTCTTGCGGGTAACAATAAGGGTT
TTGGTCCTGCCATTATGACACACCTCTCTTCTGGATCAGAAATTTGTAGA
ATGTTTAATTCCAGGAAAGGATGTCAGAAGTCCCCCTGCAGGTTTGCACA
TGCCTGTAACCGTAAGGTTGGCTCACAGGCTTGTGGGAAATCTCACCAGG
GTTTCCTACATCCTGTGGGCGAGGGTGACCCTCAATGACTCCTTTCCATT
TATTTTATATTCTAGTTTTTATTCCTGTACATATTTGCCATGTCACTGTC
TTCatttcaagaactgaaaataccatgtagaATATACTGTGTGCCTTCCT
GCCTAGTCCCCCCTTTCGACCACTTGTGTTtaag
Run BLAST on NCBI

transcript from alignment at scaffold_396:145368..149429-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063613 ID=TCONS_00063613|Name=TCONS_00063613|organism=Clytia hemisphaerica|type=transcript|length=4062bp|location=Sequence derived from alignment at scaffold_396:145368..149429- (Clytia hemisphaerica)
CTTCTAGAACATTGTCTCAGGAGCAAATTCTTCAATACCGCCAACATCTG
GAATTTCTCAAAAGTCAGGAAGCTGAGGTTCTTGAATCCATTAGGGTAGA
CCAAGAGAAGTTATTAAATGAAGAGGAGTCGCTCAGACAAGAAATACGAC
GGCAAACAGAAAAGTTGGATCGCTTGAAAGCCTCAAGAAGCCATGCCGCT
CGTTCCGCCTTTCCGCCCGAACCTCAAAGCAACCACTCAGGGGGAAACCG
TTCCGCCATTTTTAATCGTTCCCGACCCGACCTCTCCTTTCCTCGCAACA
ACAACAACAATCATCTCGTTCTTCGTTCAATTTTGCTGGTTCTGCTGCTG
CTCCATTGTTGAATTTTGGTTTGTCAAACTCACATTCCCAAGAATCATCT
TTAATTAATCGTCATATCTCGCAAAGTGAACTGTTTTTTCGTCCGACCCG
TGCAAATGATGTTACTAGAGGTAAAGCATTACGAATTATAGACTTTGTTT
CCCGAATTCGTCCAGCTGAAGATGAGAAAATCCTCTCTTACGATAATAAC
TGTAAACTTGCTCTGATCTTACAGGACACAAAACCTAAGCTTAATAGTGT
CACTATGGAACAGTTTAACATTGCCAATCTTAGAATTTTTTACGAATTAT
TATTTTCTGGGAAGCTCTCCACCCTTCTTCATGTGCAGGAATACCTCTCC
TATGCGATTAAGGTCTTGGAACTGGCGACTAAGTATACATGGCAATCCGT
GCTGCACTACGATGATGAGTTTCGTATCTTGAAGCATACTTATGGATTCT
CATGGAGTACTGACCACAGTCACCTATATGAGGTTGTTCTCATACCTCGC
TGGGCTGCGAAGCTACCTCGTGGGCTTGGGCAAAGCACTGATACTTCCTC
ATCCAAAAGTGATTCTTCTTTGTTTGGTCTTGCGGGTAACAATAAGGGTT
TTGGTCCTGCCATTATGACACACCTCTCTTCTGGATCAGAAATTTGTAGA
ATGTTTAATTCCAGGAAAGGATGTCAGAAGTCCCCCTGCAGGTTTGCACA
TGCCTGTAACCGTAAGGTTGGCTCACAGGCTTGTGGGAAATCTCACCAGG
GTTTCCTACATCCTGTGGGCGAGGGTGACCCTCAATGACTCCTTTCCATA
GAGCCTTCTCCATCTCCGCTTGACTCTGCTATTTGGGACAAGGAGTTACT
GAATGACCCTGACCGTCAGTTTTTATTTGATGGGGTGGTTAACGGTTTTC
AATTGCTCCCAGCAGATGCAAAAATTAGCCCTGCGGAAATGGAGAATTAT
AACTCTGCAGTTGGCCCTGGTTCTAAAGAAAAAGTTGAAGCCACTATTTT
GGAAGAACTGTCGGCCGGAAATTATATTGTTACTTCTGAAAAGCCTGTTA
TTGTCAGTGCCCTTGGAGCAGTTCCAAAGCCTGATTCAGAGGATCTCCGT
TTGATCCATGACTGTTCTATGCCCCACGGTTTGGGCGTCAATTCTTACAT
AGATATTGAGAAGCAATCTTTTCAGACTCTAAATGATGCCTGTAGGCTGA
TAGGGAAAGGTTTCTTCATCGCTAAGATAGATTTGAGACACGCGTACAGA
TCTGTCTCAGTCCACCCAGCCAACCGAGATGCTCTCGGGTTGAAGTGGAA
ATTTAGTGGGGACAAACACTACACGTATCTAAAAGACACACGTCTCCCCT
TTGGCGCACGTAGTGCACCAGGAATTTTTCACCGTTTGACTCAGAGTGTA
AGGCGTATGATGCAGAGAAGAGGCTTTCCTTTGATCATAGTATATCTTGA
CGATTTCTTGATCATTGGTAGGTCTCAGCATGAATGCCAGGCTGCTTTTG
TTGCACTCANTTGTTTGACTCAGAGTGTAAGGCATATGATGCAGAGAAGA
GGCTTTCCTTTGATCATAGTATATCTTGACGATTTCTTGATCATTGGTAG
GTCTCAGCATGAATGCCAGGCTGCTTTTGTTGCACTCAGCTCCCTGCTAG
TTTCTCTAGGATTCACAATCAGCCCTTCCAAGGTTGTTCCACCATGTCAA
AAATTAGTGTTTCTAGGGGTTGAGATTGATACCACAACATTGACTCTCTC
ACTCCCTGATAAGAAGCTAGGTGATCTGAAAGATGTCTTAATGTCTTTTC
AATCCCGAACTCGTGCCTCAAAGAGACAGCTCCAGCAGCTTGCCGGGCGT
CTCAACTGGGCCTGTAAAGTCATTTATGGTGGAAGAACCTTTCTACGTCG
CATTTTGGACCTTATGGGCTCCTTACAAAAACAGTCATCCAAGTGTCTGT
TGAGTGAGGAGTTCTTTAAAGATATTTCTTGGTGGTTGGACTTTCTTGAT
ATTTTTAATGGCCAGTGTTCATTCCATGACACTAGGCCTGTTACTAACAT
CCACACAGATGCCTGTTCTTCAGGTATTGGTGCAGTGTTTGGAAATGACT
GGTTCTACTCTAACTTGTGGGTTGATGCGCCTGCCTTGGCAGGTTTGCAC
ATCAACTACAAAGAGGCTCTTTGCATTGTGTTTGCCTTAGAACGTTGGGC
TCCTTTTCTCAGTAATAAGGTAGTCCATATCTATTGCGACAACACTGCTG
CAGTGGGCATGTTGAATAAGGGATCATCTCGCAACCCACTCATGATGACT
TACCTCAGGCGTCTGTTCTGGTGCTCTGCCACATACAACTTTCGCCTCAA
AGTTTACCATGTTCCGGGGGTCCTGAATGTTGTTGCTGATCATGTCTCTC
GATTGCATGAACACAAACATCTTGCAGCTTTTCTTGAGTATCTTTGTGAC
AATTTTGATCTGTTTGATCCTTCTGATGACATTGCCTGGCACATGTCTGA
GAACTGTTTCTTTTTCCTTCTTGGTTTATATGGGTCTGGCTCATGCCTTC
GCTCTGCCTTTTAGAGTTTGCGTCCTCGCTACTGGCAGAAGTGCAGTTAT
ATCGTGAAGCCACCTATGCTGTCAATACCCGCAAGGCCTACCGTACTCAC
CGTAAGGTCTATCTCCAGTTTTGCAATATGCTTGATATTCCGCCTGCTCC
TGTTCAATGTTCTCACCTCTGTATGTATGCTGCCTATTTGGCGCGGTTCC
TGTTGCCGCAGTCTGTTTGTATTTATTTGAATTTTGTTGGTCTTCTTCAC
CGGGAAATGGGTTTCCCCAACCCTCTCCTTGACAACTGGTTCCTGTCCTC
TGTGCTCAAGGGTATTAAGCGTTCTAAGGGTGTCCCACCTGTCCCCAAGC
TTCCCATCACCGTGGATATCCTCTCCTTCATTCATTCCCAACTCAACCTC
CTGGATAGCAAGCAGGCTTCTTTTTGGGCATTGTGTCTTGTTTCCTTTTT
TGGTCTTTTCCGGAAGAGCCACCTTTTGCCCGTTTCCCAGAGGGACTTTT
CACCGAGCACCTTTCTCACTAGGTCTGATTTTTCATTTGTTGGTTCTGGG
GTTCATATCAGAGTGAGGTGGAGTAAAACCATCCAGTTTGGTCAGCGTAC
TGTTACCATACCACTGGTGGCCATACCCTCTTCTCATCTCTGTCCAGTTT
TGGCTGTGTCTCGTGCTTTTTCCCTCACCCCAGGGGCCCTACCTTGTGAT
CAAGCCTTTTGTTGGAGGGATTCCCACCTTGCATCCAATCGGGTTTTTGT
GTACCGGGATTTCATGTGCATTCTCCAGGCTCACCTCTCTCGGTCTGGGC
TCTCTCCTCGTCAATATGGGTCACACTCATTCAGACGTGGTGGGGCCACT
TTTGCGTTGGAGGCCGGGGTTCCACTTGACTCCATTGCAGTCATGGGTGA
TTGGAAGTCTGATGCAATGTACCTTTATTTACATATGCCCTTGTCCCAGC
GCCTGCACGCCCAGCATTCAATTTCTTCATATATTTCGTCTCTACCTAAC
TAACTACCACACATTGGATTTGGACATTTATTTTATATTCTAGTTTTTAT
TCCTGTACATATTTGCCATGTCACTGTCTTCATTTCAAGAACTGAAAATA
CCATGTAGAATATACTGTGTGCCTTCCTGCCTAGTCCCCCCTTTCGACCA
CTTGTGTTTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039871XLOC_039871Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063613-exon-scaffold_396-1575043694:148283..149429TCONS_00063613-exon-scaffold_396-1575043694:148283..149429Clytia hemisphaericaexon
TCONS_00063613-exon-scaffold_396-1575043694:145368..145504TCONS_00063613-exon-scaffold_396-1575043694:145368..145504Clytia hemisphaericaexon
TCONS_00063613-exon-scaffold_396-1510915933:148283..149429TCONS_00063613-exon-scaffold_396-1510915933:148283..149429Clytia hemisphaericaexon
TCONS_00063613-exon-scaffold_396-1510915933:145368..145504TCONS_00063613-exon-scaffold_396-1510915933:145368..145504Clytia hemisphaericaexon
TCONS_00063613-exon-scaffold_396-1491911889:148283..149429TCONS_00063613-exon-scaffold_396-1491911889:148283..149429Clytia hemisphaericaexon
TCONS_00063613-exon-scaffold_396-1491911889:145368..145504TCONS_00063613-exon-scaffold_396-1491911889:145368..145504Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_396supercontigscaffold_396:145368..149429 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.137626	0.184104	0	0.0596451	0.0669396	0.0844641	0.321886	0.264984	0.156347	0	0.341546	0	0.590981	0.463759	0.72171	0.499446	0.775575	0.965044	1.11305	1.05459	0.537086	0.485697	0.552117	0.36023	0.891519	0.640072	0.333778	0.282254	0.638346	0.219436
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063613 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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