TCONS_00063612 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063612
Unique NameTCONS_00063612
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length850

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063612 ID=TCONS_00063612|Name=TCONS_00063612|organism=Clytia hemisphaerica|type=transcript|length=850bp
TGTCATTTGACTCTCTTAATCAAGATACCTATTCAGAACAATGTGTTCCC
TTTTCTTCAATCATAATGAATCACTGTGTTCCTTTTCAATGTTGAAAACA
ATAGAttgctaaatattttcaaaaggtaTTGTGAGTACCGAAAAAATGGT
AGCCTCTAATTATTTCAAACTTAAATTAAAGAGACCTTCCTCAAGGGAAA
AAGGAACTCTTTTATTCGAAAACGTATAAAACAATTATCATAACCAAAAT
GACGAATTTCTTTTGACAAAGGAACCATCTTGGGATAACTTGACTGCAAA
CATAGAAGAACTTCATGAACATGAAATGAGCAAAATGTTTGACACTTTGA
ATGTTAATGTTGATGATTGTGACATCAATGAAGAGGACTTCTTGACTGAG
ATAAATTCATATCCATACGACGAGCCAAAGCCATTGTGCAGAGGAGTAAA
TATGTCACTTGAAAATTCGCTGCTTCTTCACATGGCATTTTCCAGGAGGC
ACAATCTTACAAAGGCTGCGTTGAAAGATCTGTTATCCTTGACATCATTG
CATTTATGTAAACCAAATGGATTCCCAACGACCATTGATCAAATGTATAA
TGTACTTGGTTTGCAAGAAAGTGAAGTAACAAATGTATATTACTGCAGTA
ATTGTAATATATCGTTGGATAAACCAAGTGACAAATGTATTCATTGTCCA
AGTAAAAAACAAGACCATTTTGTATACAATAATGTTCAATCCCAACTGAA
AAGGATTTTAAAAAGTAAGGACTTTTATATTTGTATCAAGATTTATGTAC
TGACTTTACATGTATGTAATGGGAAAAACTTTCGTGAATTTGAATAATTG
Run BLAST on NCBI

protein sequence of TCONS_00063612-protein

>TCONS_00063612-protein ID=TCONS_00063612-protein|Name=TCONS_00063612-protein|organism=Clytia hemisphaerica|type=polypeptide|length=173bp
MSKMFDTLNVNVDDCDINEEDFLTEINSYPYDEPKPLCRGVNMSLENSLL
LHMAFSRRHNLTKAALKDLLSLTSLHLCKPNGFPTTIDQMYNVLGLQESE
VTNVYYCSNCNISLDKPSDKCIHCPSKKQDHFVYNNVQSQLKRILKSKDF
YICIKIYVLTLHVCNGKNFREFE
Run BLAST on NCBI

transcript from alignment at scaffold_396:105272..109855-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063612 ID=TCONS_00063612|Name=TCONS_00063612|organism=Clytia hemisphaerica|type=transcript|length=4584bp|location=Sequence derived from alignment at scaffold_396:105272..109855- (Clytia hemisphaerica)
TGTCATTTGACTCTCTTAATCAAGATACCTATTCAGAACAATGTGTTCCC
TTTTCTTCAATCATAATGAATCACTGTGTTCCTTTTCAATGTTGAAAACA
ATAGATTGCTAAATATTTTCAAAAGGTATTGTGAGTACCGAAAAAATGGT
AGCCTCTAATTATTTCAAACTTAAATTAAAGAGACCTTCCTCAAGGGAAA
AAGGAACTCTTTTATTCGAAAACGTATAAAACAATTATCATAACCAAAAT
GACGAATTTCTTTTGACAAAGGAACCATCTTGGGATAACTTGACTGCAAA
CATAGAAGAACTTCATGAACATGAAATGAGTAAGTGTGTGTACGCATACC
AAAAGAAAATACAATTATCTACAGTACAGTATAAGTATAGCAAGCATGCA
TGCAGTCTTGCTCTGCTGACAGTCATGCAGGAGGCGCTTGGCAGTATATT
AAATGTAATGTCATGTCACATCGTTGGCAGTATGTTATAACCAGGCCAGA
CGATCTCAATCGAACGGAATCGACGATCGAACCAAATCGAATGCAATCGA
CCGATTGAAATTCGATTGTCGAACGCAATCGAATCTCAATCGAACGTCAA
AATTCTGGGTAATATTCGATTGGTTCGATTGTTNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNGATTGAGATCGTCTGGCTTTATTCTTGCAGCTTCC
CAACATCCAAGCTCTCAAACATCACAAGCCGAATGAAATTAATTTCGATT
TCCCGTAGAAATTATGCGATGAACAATCCGGGGGTCAATGATGAATCGGC
GATCGATTGCGTTCGATTTGGTTCGACTGGTTCGATCGTCGATTCCGTTC
GATTGAGATCGTCTGGTTATAATGTATTGCCACATACATAGACCTTTTTT
CAAAGAGGCCACCCTGTTGAATAATTATGTAGTCCAGCAGAAAAACAATG
ATAAAACCATGCATAATTATTACAATATGCATGATACAGCAATTATGCAT
GGCTCTATCATTGTTTTTATGGCTGGACTACATAGTCATTCAACAGGACG
TCCTCTTTGAAAAAAGGTCTATTAGATTACCAATAACAACAATTGTTGCA
CAAACACTTGTAATTTATGGGCGCGAGCACCCTGTTGCTAAGAGGTTGGC
TTAAAATCGAAAATGAAACCACTGAAAATAAAAGTAAAATTGGCTCGCAC
TTAAAATCCCGTAATCTTGATATACTAGTTTCCGTTCCACTTGTCCGTTA
ATTTTTTTAATCAAACTTTAATCGTTCGATGAAGTTCGATTAGTTCGATG
GTTCGATTGGTACGACAAGTCCACGATTGATTGGGTCTGGTTTAGTAGGT
CTTTACTGTCTGGACGACCCTGTCGGGGCGCACCGGACAGTCTGGTGTTT
TTGTCCGGTGCCAAAAAGTATCCTTTCTTTACACCGTGGTGGTGGTGAGT
CCAGTGTCCAGTGTCAAATGCCGGGAGCTCTAGGCACCGGACATGCGTCA
GAAAAAAATTAATGCGCACCAGACACATCGGACTTCGGACTTCCATAAGT
CCAGTGTTGGGGTTGTCCAGTGGTAAAAAGTATTCTTATCTGACACCAGA
CATCCACTATGTCAGACGTGCTGTCGAGTCCGGTGCGCCGGCAGGGTCGT
CTGTCTGGAAGTTAGTCCGGCGGCGACCCAGGATCACCCTTACAATTAGT
AAATATGGGTTTTTGTTTTATTTTCCCATCATATGGTCCCTTGGGACCCC
AAAACCGGTTTTTGCCAAGCTGGCAAAGGTGGGGAAAATTTTTTATGGGG
GCTTGAAGGGGGTAGGGTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNCACTAATGATCGCAACTTTGAGAGTTTTT
GTGTGTAAATAAAGAAGTTACTAATTCTATGTGAATTACAATTTCTTTTG
GAAATTTCACAACGCATCTGACAAATTTTTCGAAGGCACCAAAAGTAATT
GGGTCGGACATTTCAGCAATTGGGTCGGACAATGTCCGATGTCCGACCGT
TATTTCGAGCCCTGTGCACTGGTAGAAATTTCTCAAACTTTCAACAATGA
GGTCTTGATTTAGAAAGGGCTGAGCATTTTAGCCTCCACTGTTGCAAGTT
ACCCTTTCTCACGGTATTAGTCTGTACTTTGAAAAATATATTTGAATTTT
TCCTGTTTTTCAGGCAAAATGTTTGACACTTTGAATGTTAATGTTGATGA
TTGTGACATCAATGAAGAGGACTTCTTGACTGAGATAAATTCATATCCAT
ACGACGAGCCAAAGCCATTGTGCAGAGGAGTAAATATGTCACTTGAAAAT
TCGCTGCTTCTTCACATGGCATTTTCCAGGAGGCACAATCTTACAAAGGC
TGCGTTGAAAGATCTGTTATCCTTGACATCATTGCATTTATGTAAACCAA
ATGGATTCCCAACGACCATTGATCAAATGTATAATGTACTTGGTTTGCAA
GAAAGTGAAGTAACAAATGTATATTACTGCAGTAATTGTAATATATCGTT
GGATAAACCAAGTGACAAATGTATTCATTGTCCAAGTAAAAAACAAGACC
ATTTTGTATACAATAATGTTCAATCCCAACTGAAAAGGATTTTAAAAAGT
AAGGACTTTTATATTTGTATCAAGATTTATGTACTGACTTTACATGTATG
TAATGGGAAAAACTTTCGTGAATTTGAATAATTG

Coding sequence (CDS) from alignment at scaffold_396:105272..109855-

>TCONS_00063612 ID=TCONS_00063612|Name=TCONS_00063612|organism=Clytia hemisphaerica|type=CDS|length=1044bp|location=Sequence derived from alignment at scaffold_396:105272..109855- (Clytia hemisphaerica)
GCAAAATGTTTGACACTTTGAATGTTAATGTTGATGATTGTGACATCAAT
GAAGAGGACTTCTTGACTGAGATAAATTCATATCCATACGACGAGCCAAA
GCCATTGTGCAGAGGAGTAAATATGTCACTTGAAAATTCGCTGCTTCTTC
ACATGGCATTTTCCAGGAGGCACAATCTTACAAAGGCTGCGTTGAAAGAT
CTGTTATCCTTGACATCATTGCATTTATGTAAACCAAATGGATTCCCAAC
GACCATTGATCAAATGTATAATGTACTTGGTTTGCAAGAAAGTGAAGTAA
CAAATGTATATTACTGCAGTAATTGTAATATATCGTTGGATAAACCAAGT
GACAAATGTATTCATTGTCCAAGTAAAAAACAAGACCATTTTGTATACAA
TAATGTTCAATCCCAACTGAAAAGGATTTTAAAAAGTAAGGACTTTTATA
TTTGTATCAAGATTTATGTACTGACTTTACATGTATGTAATGGGAAAAAC
TTTCGTGAATTTGAATAAATGAGCAAAATGTTTGACACTTTGAATGTTAA
TGTTGATGATTGTGACATCAATGAAGAGGACTTCTTGACTGAGATAAATT
CATATCCATACGACGAGCCAAAGCCATTGTGCAGAGGAGTAAATATGTCA
CTTGAAAATTCGCTGCTTCTTCACATGGCATTTTCCAGGAGGCACAATCT
TACAAAGGCTGCGTTGAAAGATCTGTTATCCTTGACATCATTGCATTTAT
GTAAACCAAATGGATTCCCAACGACCATTGATCAAATGTATAATGTACTT
GGTTTGCAAGAAAGTGAAGTAACAAATGTATATTACTGCAGTAATTGTAA
TATATCGTTGGATAAACCAAGTGACAAATGTATTCATTGTCCAAGTAAAA
AACAAGACCATTTTGTATACAATAATGTTCAATCCCAACTGAAAAGGATT
TTAAAAAGTAAGGACTTTTATATTTGTATCAAGATTTATGTACTGACTTT
ACATGTATGTAATGGGAAAAACTTTCGTGAATTTGAATAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039870XLOC_039870Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063612-proteinTCONS_00063612-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063612-exon-scaffold_396-1575043694:109527..109855TCONS_00063612-exon-scaffold_396-1575043694:109527..109855Clytia hemisphaericaexon
TCONS_00063612-exon-scaffold_396-1575043694:105272..105792TCONS_00063612-exon-scaffold_396-1575043694:105272..105792Clytia hemisphaericaexon
TCONS_00063612-exon-scaffold_396-1510915933:109527..109855TCONS_00063612-exon-scaffold_396-1510915933:109527..109855Clytia hemisphaericaexon
TCONS_00063612-exon-scaffold_396-1510915933:105272..105792TCONS_00063612-exon-scaffold_396-1510915933:105272..105792Clytia hemisphaericaexon
TCONS_00063612-exon-scaffold_396-1491911889:109527..109855TCONS_00063612-exon-scaffold_396-1491911889:109527..109855Clytia hemisphaericaexon
TCONS_00063612-exon-scaffold_396-1491911889:105272..105792TCONS_00063612-exon-scaffold_396-1491911889:105272..105792Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_396supercontigscaffold_396:105272..109855 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.217245	0.266469	0.30109	0.299662	0	0.153695	0.184049	0	1.9543	1.97825	2.8187	3.52254	1.40047	1.15837	3.43778	3.5541	1.23244	1.74954	0.0594242	0.0530346	3.10431	0.821401	2.50801	0.991653
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063612 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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